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1224 Commits

Author SHA1 Message Date
Efstratios Giannopoulos 191f887530 database enum handle implementation 2023-10-16 17:38:12 +03:00
Thomas Georgios Giannos b537810406 Removed redundant code that calculated count on queries, already implemented on the data tools package 2023-10-16 12:22:41 +03:00
Thomas Georgios Giannos 234aa359c0 Removed redundant code that calculated count on queries, already implemented on the data tools package 2023-10-16 12:21:58 +03:00
Efstratios Giannopoulos d5c62539c5 task #9086 public urls support 2023-10-13 18:11:46 +03:00
George Kalampokis 5976084473 Fix security on LanguageController 2023-10-13 16:46:38 +03:00
George Kalampokis a9a3273f62 Fix compilation errors and fix swagger ui description formatting 2023-10-13 09:50:22 +03:00
Efstratios Giannopoulos 5009d658ed task #9045 Refactor authentication mechanism to support using Keycloak 2023-10-12 16:16:19 +03:00
Efstratios Giannopoulos 055d29b95f Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/web/pom.xml
#	dmp-backend/web/src/main/resources/config/application.yml
 2023-10-12 12:04:26 +03:00
George Kalampokis b845450ebd Update Swagger ui 2023-10-12 10:55:48 +03:00
Efstratios Giannopoulos 968f45d5b3 authn refactor 2023-10-11 17:53:12 +03:00
Efstratios Giannopoulos 8b05ee1d0f add cache yml 2023-10-11 10:09:46 +03:00
George Kalampokis de2f5e67fd Fix profile issue 2023-10-11 09:53:24 +03:00
George Kalampokis 755c79b7af Separate configuration to different files 2023-10-10 16:49:48 +03:00
George Kalampokis 166bea73bf Replace the old .properties configuration files with the .yml 2023-10-09 16:02:14 +03:00
Thomas Georgios Giannos 55aecd9c57 Updating description template type controller with apropriate auditing and logging, added censor, refactored query building to conform with other projects workflows 2023-10-09 11:17:16 +03:00
George Kalampokis cab2f1bc64 Add Environment variables 2023-10-09 10:38:46 +03:00
George Kalampokis b5cbe6a3d8 Merge remote-tracking branch 'origin/dmp-refactoring' into dmp-refactoring 2023-10-06 18:11:11 +03:00
George Kalampokis 70308db668 Add Authentication support for the remote fetcher and rework dataset template's autocomplete sources 2023-10-06 18:07:58 +03:00
Thomas Georgios Giannos c7778e80b9 Adding missing auditing configuration property 2023-10-06 15:22:38 +03:00
Thomas Georgios Giannos 0b901205ee Adding auditing, naming convention change in API endpoints for description types 2023-10-06 12:13:09 +03:00
Diamantis Tziotzios 66052f8af6 sync fixes 2023-10-05 14:12:39 +03:00
Bernaldo Mihasi b7f68f1a7e bug fixes 
(cherry picked from commit 846405435c)
 2023-10-05 14:04:26 +03:00
Bernaldo Mihasi 03f2bc862e 1) update dmp blueprint listing table view, 2) create clone functionality for dmp blueprints, 3) section description is not required in editor, 4) in the deletion of a dmp blueprint check if any dmps are accosiated with it 2023-10-05 14:04:10 +03:00
Bernaldo Mihasi 4373bf4b00 bug fixes: 1) when creating description template type check only for non deleted types, 2) dmp docx/pdf export: check if system fields exist 3) when creating/updating dmp check if value for extra fields is set, 4) when unchecking the 'Description Templates' checkbox in the blueprint editor, clear any templates selected 2023-10-05 14:02:20 +03:00
Bernaldo Mihasi 09dcf5328d add type attribute in xml import/export of a description template 
(cherry picked from commit 3d10e8ad28)
 2023-10-05 14:00:30 +03:00
Bernaldo Mihasi 94c0f7ac9c [wip] dmp xml upload changes, including section and extra fields information 2023-10-05 14:00:17 +03:00
Thomas Georgios Giannos 3f14528f16 Fixing UI incompatibilities 2023-10-05 11:41:11 +03:00
Thomas Georgios Giannos 074e374d9a Removing old implementation of DescriptionTemplateType entity, fixing issues with entity scanning and field resolving on new implementation 2023-10-04 12:46:06 +03:00
Thomas Georgios Giannos 7c96078570 Updating Spring to version 6, adding service stack for DescriptionType entity 2023-10-03 17:29:45 +03:00
Bernaldo Mihasi 6b544e4702 bug fixes 2023-09-27 16:57:25 +03:00
Bernaldo Mihasi 2f4e123ac9 bug fixes 2023-09-27 12:54:18 +03:00
Bernaldo Mihasi c99267d6cc #8998 - implement import/export functionality for dmp blueprints 2023-09-26 09:35:59 +03:00
Bernaldo Mihasi 34580f917f check if grant exists in word/pdf export 2023-09-22 12:57:47 +03:00
Bernaldo Mihasi beac6be706 add missing grant checks 2023-09-22 09:31:12 +03:00
Bernaldo Mihasi fbad63ee76 use dmp label in export file names if grant does not exist 2023-09-22 09:29:51 +03:00
Bernaldo Mihasi 79aaf23bb6 add missing grant checks 2023-09-21 10:20:32 +03:00
Bernaldo Mihasi db08662cac fix bug when creating new version or clone a dmp 2023-09-21 09:33:27 +03:00
Bernaldo Mihasi 367861c050 fix bugs: saving extra fields in dmp, showing draft blueprints when min or max of a description template are not set 2023-09-20 09:34:39 +03:00
Bernaldo Mihasi 93c5918251 make grant funder not mandatory for the creation/new version/clone of dmp 2023-09-18 17:48:54 +03:00
Bernaldo Mihasi b1a832074d small fixes, (wip) remove description template chip from dmp editor 2023-09-13 15:55:38 +03:00
Diamantis Tziotzios cf6e041154 Merge remote-tracking branch 'origin/refactorArgosModel' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DatasetRDAMapper.java
#	dmp-frontend/src/app/ui/dashboard/drafts/drafts.component.html
 2023-09-13 10:01:57 +03:00
Bernaldo Mihasi 6154a5fa51 fix associated dmps bugs in DMP table, new/existing DmpDatasetProfile entries were not saved/updated 2023-09-12 15:36:06 +03:00
Bernaldo Mihasi bbe4975176 add hasTemplates property to sections, it indicates if descriptions templates can be added in a section 2023-09-11 08:59:47 +03:00
Bernaldo Mihasi 4219d90039 add "DmpSectionIndex" column to descriptions in order to know in which section of a dmp the description belongs, add "data" column in DmpDatasetProfile table, data stores in which sections a description template is saved 2023-09-11 08:57:09 +03:00
Bernaldo Mihasi 6073c4cd85 [WIP] refactor dmp export following the blueprint schema 2023-09-11 08:42:30 +03:00
Bernaldo Mihasi cd80e78e40 add status to description template types, fix bugs in editor/listing 2023-09-11 08:40:03 +03:00
George Kalampokis 5019bc4271 Add manual addition of total users in prometheus 2023-08-04 11:55:46 +03:00
Bernaldo Mihasi 78946de1b5 change images source in emails to base64 
(cherry picked from commit b94aa51489)
 2023-08-03 13:26:27 +03:00
Bernaldo Mihasi 17dbd198ad fix dmp blueprint editor screen 2023-08-03 13:10:36 +03:00
Bernaldo Mihasi b94aa51489 change images source in emails to base64 2023-08-03 11:19:33 +03:00
Diamantis Tziotzios b6cade6e88 metrics change 
(cherry picked from commit 903026e2c2)
 2023-08-03 10:28:56 +03:00
Diamantis Tziotzios 903026e2c2 metrics change 2023-08-03 10:28:18 +03:00
Bernaldo Mihasi 30abe4d4c9 #8952 - fix bug when merging two accounts did not have consistent behaviour. 2023-08-01 11:23:06 +03:00
Bernaldo Mihasi 634d49ea35 #8916 - when merging acoounts, save the main profile user as collaborator to elastic dmps/datasets 2023-07-27 10:07:40 +03:00
Bernaldo Mihasi e01709f886 #8936 - fix bug when pid of object fetched was integer(PIC typed) instead of string 2023-07-27 10:06:04 +03:00
Bernaldo Mihasi 09d6528f8f #8855 - #8856 - #8901 - #8902 [wip] implementing dmp blueprints 2023-07-25 15:51:29 +03:00
Bernaldo Mihasi 128b47d9c3 #8845 - #8846: adding description template types, creation of description template type field in the dataset template editor, [wip] creation of admin page for creation/editing/deleting of description template types 2023-07-25 15:27:15 +03:00
Bernaldo Mihasi bc279b1610 #8843 - 1. refactor the DatasetProfile Table to DescriptionTemplate name 2. add scripts for the new DescriptionTemplateType table 3. update english localization + frontend 2023-07-25 15:04:39 +03:00
Bernaldo Mihasi 3fc307c831 #8912: adding new metadata/registries api in the configs 2023-07-21 17:04:41 +03:00
Bernaldo Mihasi ee90ac37b6 no message 2023-07-20 13:34:56 +03:00
Bernaldo Mihasi 0918e55ac9 fix bug in dataset template editor when a field is an admin-input api and couldn't fetch results 2023-07-20 13:07:05 +03:00
Bernaldo Mihasi 2db9ea613f catch error in prefilling when source mapping does not exist in the api's response 2023-07-20 13:00:24 +03:00
Konstantina Galouni e878310b72 #8834: Home page: Drafts query for both Datasets and DMPs. 
1. RecentActivityCriteria.java: Added in RecentActivityCriteria field "private Integer status;", to be able to get only drafts.
2. DashBoardManager.java: In method "getNewRecentActivity()", add in Dataset and DMP requests status in criteria.
 2023-07-17 18:10:49 +03:00
Bernaldo Mihasi dd6a2a0df7 adding key property in the prefilling model as the identifier of the prefilling repository 2023-07-17 10:29:06 +03:00
Bernaldo Mihasi 1715463422 fix bugs in rda json export when rda semantics don't correspond to valid dataset field input type 2023-07-14 13:56:08 +03:00
Bernaldo Mihasi a8ce14af70 #8726 - adding openaire prefilling 2023-07-14 13:47:01 +03:00
Bernaldo Mihasi 1a15e1ddde add missing logger to Prefilling Mapper 2023-07-03 17:09:15 +03:00
Bernaldo Mihasi 000882cbdb 1) fix bug when tags don't show after saving the dataset 
2) save the email when user logs in with orcid
3) refactor unlink, delete credential of user to be unlinked
 2023-07-03 11:40:35 +03:00
Bernaldo Mihasi 1c0562d7e7 catch error when a field's external api is not available and interrupts prefilling process 2023-06-26 14:16:41 +03:00
Bernaldo Mihasi cb972c394c change maDmpTarget type in prefilling to semanticTarget 2023-06-22 13:47:01 +03:00
Bernaldo Mihasi d996acdcc4 #8842 - add notification templates html files to application properties 2023-06-21 13:09:20 +03:00
Bernaldo Mihasi 741179a53f #8740 - multiple configuration for a deposit repository 2023-06-21 12:46:37 +03:00
Bernaldo Mihasi 3630727fed dmp profile bug fixes: 1) dmp profile was not saved 2) if you select external autocomplete field and change it to another type, the external field was saved 2023-06-21 12:20:30 +03:00
Bernaldo Mihasi 34e4761811 bug fixes regarding tickets: #8739, #8763, #8833 2023-06-21 12:17:22 +03:00
Bernaldo Mihasi dfa2f0cd38 #8737 - make elastic fetch 100 inner hits instead of the default 3. 2023-06-21 12:05:51 +03:00
Bernaldo Mihasi 3d367b0589 #8765 - make pids coming from apis as hypelinks in export 2023-06-21 12:00:20 +03:00
Bernaldo Mihasi b6505cda4e refactor signing of saml2 authentication request 2023-06-21 11:51:26 +03:00
Bernaldo Mihasi 2aa1f76aab use sha256 with rsa keys for saml2, fix bug for authentication request's id 2023-06-13 15:47:18 +03:00
Bernaldo Mihasi 1f666a5bf9 create saml2 authentication request in backend 2023-06-13 09:48:54 +03:00
Bernaldo Mihasi 4c9652abc3 saml2 metadata creation for sp 2023-06-12 15:05:51 +03:00
Bernaldo Mihasi b2f2a79a5d add unlink functionality in profile section, when an email is unlinked that account is starting from scratch resulting in an empty dashboard. 2023-05-23 17:15:11 +03:00
Bernaldo Mihasi 5e764559cf fix typo (semantics) 2023-05-19 12:34:08 +03:00
Bernaldo Mihasi a3ee9dccda update deposit base repository version 2023-05-18 15:48:12 +03:00
Bernaldo Mihasi 758539eaa0 add zenodo related identifiers for schematics 2023-05-17 13:51:21 +03:00
Bernaldo Mihasi af8fddb89c #7911 - read pid and pid type from external api respones so as to save those values in the dataset field 2023-05-17 13:45:12 +03:00
Bernaldo Mihasi a1fd03a444 fix out of memory error in management endpoints. 2023-04-26 17:27:21 +03:00
Bernaldo Mihasi 8c30c558b2 User Guide, ToS, FAQ, Glossary, About html pages can now be dynamically updated so that they can be changed per installation. 2023-04-26 17:25:59 +03:00
Bernaldo Mihasi 7b12d7b46d temporarily endpoint for appending "rda." in schematic values of dataset profiles 2023-04-20 10:12:55 +03:00
Diamantis Tziotzios 89922eaecc Merge remote-tracking branch 'origin/semantics' into Development 2023-04-18 11:19:48 +03:00
Bernaldo Mihasi 11a9abae42 version change in base deposit repository 2023-04-18 10:51:13 +03:00
Bernaldo Mihasi 8293535bb0 add zenodo properties in schematics 2023-04-18 09:41:01 +03:00
Konstantina Galouni c9b4b35e39 h2020.docx: [Bug fix] Updated image of Argos in h2020.docx DMP template | DataManagementPlanManager.java & DatasetManager.java: Added parameter "isDataset" in fillFirstPage() | WordBuilder.java: [Bug fix] Added parameter isDataset in fillFirstPage() and added some checks in description. 2023-04-05 11:13:26 +03:00
Bernaldo Mihasi 63c866d74f set creator in new/cloned/newVersioned dmp 2023-03-30 11:44:50 +03:00
Bernaldo Mihasi b6b7a2444c add xml attributes in dmp xml export 2023-03-30 11:44:00 +03:00
Bernaldo Mihasi 18a200f099 no message 2023-03-27 15:25:19 +03:00
Bernaldo Mihasi 18ccb3ca0c changes in dmp deposit model 2023-03-27 15:24:50 +03:00
Bernaldo Mihasi a90f21b6aa fix issues in dmp xml export 2023-03-27 15:21:12 +03:00
Bernaldo Mihasi 376bb2ca53 changes in dmp deposit model 2023-03-27 14:59:47 +03:00
Bernaldo Mihasi 969df0357a migrate rda properties in dataset profiles definitions in db to schematics 2023-03-27 14:58:45 +03:00
Bernaldo Mihasi c35bc2efed remove rda property from models 2023-03-27 14:52:37 +03:00
Bernaldo Mihasi 519cb260c6 fix issue with users returned as empty array, add researchers in response 2023-03-07 09:44:16 +02:00
Bernaldo Mihasi 87c9730524 puplic api return total count in response 2023-03-03 11:44:21 +02:00
Diamantis Tziotzios 9ebefa8369 Merge branch 'public_api_update' into Development 2023-03-03 10:23:52 +02:00
Konstantina Galouni 28c1c9b71d h2020.docx & WordBuilder.java: Updated h2020.docx DMP template and added export of DMP description. 2023-02-28 11:01:44 +02:00
Bernaldo Mihasi e2505039df cleanup unused code 2023-02-21 14:09:33 +02:00
Bernaldo Mihasi b273ca4ed7 search for schematics fields in prefilling 2023-02-21 12:44:48 +02:00
Bernaldo Mihasi 0c57bba0b4 rda json dmp import/export 2023-02-21 11:57:34 +02:00
Bernaldo Mihasi 9a8fc5e92e schematics implementation, xml import export of dataset profiles 2023-02-21 11:46:44 +02:00
Bernaldo Mihasi e22e348330 cleanup unused code 2023-02-21 11:41:07 +02:00
Bernaldo Mihasi ab124e87ea add new filters(grantLike, funderLike, collaboratorsLike) 2023-02-14 12:16:11 +02:00
Bernaldo Mihasi 57a400f817 update repository base version 2023-01-18 09:37:34 +02:00
Bernaldo Mihasi 030f1ccf8e add repository logo 2023-01-17 14:41:04 +02:00
Diamantis Tziotzios 4dccaa93b8 Merge branch 'multipleRepos' into Development 2023-01-16 14:11:43 +02:00
Bernaldo Mihasi 66b2596036 delete files used for deposit in tmp storage 2022-12-27 09:44:43 +02:00
Bernaldo Mihasi 749dbefc38 1. return bad request when deposition failed and returned null 
2. close modal with repositories after a successful deposition
 2022-12-19 16:07:03 +02:00
Bernaldo Mihasi fbc274282c fix deposit base dependancy in web 2022-12-13 10:55:32 +02:00
Bernaldo Mihasi 39d709f41d no message 2022-12-13 09:46:00 +02:00
Bernaldo Mihasi c6d37806c8 drop column doi from dmp and refactor code(replace single doi with list of dois) 2022-12-08 13:12:54 +02:00
Bernaldo Mihasi ad00695d4e fix bug allowing invalid characters in pdf name 2022-12-08 13:04:55 +02:00
Bernaldo Mihasi 572be373e5 don't deposit empty supportingFiles.zip when no files are uploaded in datasets 2022-12-08 13:02:08 +02:00
George Kalampokis 6caef3e890 Remove thread sleeps when trying to load config files and removed principal from Exception Handling Controller 2022-11-30 18:19:40 +02:00
Bernaldo Mihasi 679354f699 deposit datasets' attached files in zip format 2022-11-30 09:43:03 +02:00
Konstantinos Triantafyllou c9c99be603 Merge branch 'table-field' into Development 2022-11-29 10:19:15 +02:00
Diamantis Tziotzios 75007286fc elasticsearch cert change 2022-11-25 17:03:25 +02:00
Bernaldo Mihasi 7a0e1c89f2 when finalizing a dmp and its access rights are open, make it publicly available in Argos 2022-11-24 16:29:11 +02:00
Bernaldo Mihasi 573aab059b remove redundant parameter in deposit interface 2022-11-22 09:58:47 +02:00
Bernaldo Mihasi 5e2639848b dmps are deposited in dataverse as datasets under a parent predefined dataverse collenction 
when a new dmp version is created and deposited, the corresponding dataset in dataverse/collection in zenodo create a new version too
deposit dmps as published not drafts
 2022-11-22 09:40:05 +02:00
George Kalampokis 0888b7cd74 Enable health and metrics built-in endpoints 2022-11-21 14:06:59 +02:00
Konstantinos Triantafyllou 925fc3ce4a Merge branch 'Development' into table-field 2022-11-10 17:54:28 +02:00
Bernaldo Mihasi b4490cb0f3 [WIP] implement dataverse repository deposit 2022-11-10 10:12:11 +02:00
Konstantina Galouni 2bbf89e779 HtmlToWorldBuilder.java & WordBuilder.java: Added methods for exporting inputs of a question as table. 2022-11-08 14:39:23 +02:00
Diamantis Tziotzios 0cd20605f0 user guide image update 2022-11-02 15:39:42 +02:00
Bernaldo Mihasi 6b2bc3c1e0 cleanup code, add authorizationUrl and recordUrl in repositories config 2022-11-02 13:31:42 +02:00
Bernaldo Mihasi 59e26dbb8d [WIP] EntityDoi table 2022-11-02 09:41:40 +02:00
Konstantina Galouni 37724380e9 #7276 - Added tableView true/false option in multiplicity 2022-11-01 16:24:28 +02:00
Bernaldo Mihasi 7d624a2daa [WIP] system deposit authentication, using default repo token 2022-10-27 09:32:26 +03:00
Bernaldo Mihasi ab66a5f1da [WIP] implement zenodo repository deposit, add authentication for depositions 2022-10-26 13:50:01 +03:00
Bernaldo Mihasi 7dd2030eb3 [WIP] create deposit interface and implement multiple deposit repositories 2022-10-24 09:35:49 +03:00
Bernaldo Mihasi 20f618a5d7 fix request body examples in publicapi 2022-10-18 09:39:46 +03:00
Bernaldo Mihasi 2b692fa579 fix public api paths 2022-10-10 11:56:48 +03:00
Bernaldo Mihasi ef327a0a57 expose public api 2022-10-04 13:06:49 +03:00
Bernaldo Mihasi 5087a37e15 dockerization 2022-09-13 10:35:56 +03:00
Konstantina Galouni 49e42e9cba h2020_dataset.docx & WordBuilder.java & DataManagementPlanManager.java & DatasetManager.java: Updated footer of Dataset template to set title of DMP and Dataset. 2022-07-28 17:30:44 +03:00
George Kalampokis fa723c07ae Fix critical issue with open file handle leak on user guide folder 2022-07-28 11:23:39 +03:00
Konstantina Galouni a2228a5fb6 #7597, #7893, #7895, #7898: Updated DMP template file (h2020.docx) for export | Added Dataset template file (h2020_dataset.docx) for export | Updated indentation on exported docs. 
1. h2020.docx, h2020_dataset.docx: Updated DMP template & Added Dataset template.
2. application.properties, application-devel.properties, application-production.properties, application-staging.properties: Added property for dataset template file path configuration.h2020datasettemplate=documents/h2020_dataset.docx
3. ConfigLoader.java: Added method XWPFDocument getDatasetDocument();
4. DefaultConfigLoader.java: Added fiedls and methods for loading Dataset template (h2020_dataset.docx).
5. DataManagementPlanManager.java, DatasetManager.java, , HtmlToWorldBuilder.java, WordBuilder.java: Updated header/footer/first page in exports for DMPs and Datasets  | Updated indentation in exports.
 2022-07-26 17:00:54 +03:00
Konstantina Galouni 9b4c7aeb6f DataManagementPlanManager.java: #7893 - Added description of Datasets on DMP exported word file. 2022-07-12 12:52:04 +03:00
Konstantinos Triantafyllou 304a6cfdb3 Backend: Fix a bug with compareTo of a field throwing an error because ordinal is not exists. FrontEnd: Initialize visibility rules for multiple fields coming from service according to their parents. 2022-06-23 15:38:48 +03:00
Konstantina Galouni 18e98938d5 WordBuilder.java: #7869 - In exported file fix hidden question title and a. /b. /c for empty answers. 
a. fix hidden question title when more than 1 multiplicity answers,
b. fix hidden question title when  no value in the last multiplicity answer,
c. Do not show a. / b. / c.... for empty multiplicity answers,
d. Do not show a. / b. / c.... when more than 1 multiplicity answers, but only one with value.
 2022-06-23 15:32:05 +03:00
Diamantis Tziotzios 2ecce0acb0 elastic conf changes 2022-06-14 14:22:59 +03:00
Bernaldo Mihasi 8b26ff19b6 Merge branch 'Development' of https://code-repo.d4science.org/MaDgiK-CITE/argos into Development 2022-06-14 10:25:53 +03:00