[WIP] implement zenodo repository deposit, add authentication for depositions
This commit is contained in:
parent
7dd2030eb3
commit
ab66a5f1da
|
@ -4,11 +4,13 @@
|
|||
<modelVersion>4.0.0</modelVersion>
|
||||
|
||||
<parent>
|
||||
<groupId>eu.eudat</groupId>
|
||||
<artifactId>dmp-backend</artifactId>
|
||||
<version>1.0.0-SNAPSHOT</version>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-parent</artifactId>
|
||||
<version>2.7.4</version>
|
||||
<relativePath/>
|
||||
</parent>
|
||||
|
||||
<groupId>eu.eudat</groupId>
|
||||
<artifactId>depositinterface</artifactId>
|
||||
<version>1.0-SNAPSHOT</version>
|
||||
<packaging>jar</packaging>
|
||||
|
|
|
@ -6,7 +6,7 @@ public interface RepositoryDeposit {
|
|||
|
||||
String deposit(DMPDepositModel dmpDepositModel, boolean update, String repositoryAccessToken) throws Exception;
|
||||
|
||||
//authenticate();
|
||||
String authenticate(String code);
|
||||
|
||||
RepositoryDepositConfiguration getConfiguration();
|
||||
|
||||
|
|
|
@ -18,7 +18,6 @@
|
|||
<module>web</module>
|
||||
<module>data</module>
|
||||
<module>elastic</module>
|
||||
<module>depositinterface</module>
|
||||
</modules>
|
||||
|
||||
<properties>
|
||||
|
|
|
@ -225,6 +225,13 @@
|
|||
<configuration>
|
||||
<layout>ZIP</layout>
|
||||
</configuration>
|
||||
<executions>
|
||||
<execution>
|
||||
<goals>
|
||||
<goal>repackage</goal>
|
||||
</goals>
|
||||
</execution>
|
||||
</executions>
|
||||
</plugin>
|
||||
</plugins>
|
||||
</build>
|
||||
|
|
|
@ -1,8 +1,10 @@
|
|||
package eu.eudat.controllers;
|
||||
|
||||
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||
import eu.eudat.logic.managers.DepositManager;
|
||||
import eu.eudat.logic.security.claims.ClaimedAuthorities;
|
||||
import eu.eudat.logic.services.ApiContext;
|
||||
import eu.eudat.models.data.doi.DepositRequest;
|
||||
import eu.eudat.models.data.helpers.responses.ResponseItem;
|
||||
import eu.eudat.models.data.security.Principal;
|
||||
import eu.eudat.types.ApiMessageCode;
|
||||
|
@ -32,8 +34,26 @@ public class DepositController extends BaseController {
|
|||
|
||||
@RequestMapping(method = RequestMethod.GET, value = {"/repos"})
|
||||
public @ResponseBody
|
||||
ResponseEntity<ResponseItem<List<String>>> getAvailableRepos(@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws Exception {
|
||||
List<String> ids = this.depositManager.getAvailableRepos();
|
||||
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<String>>().status(ApiMessageCode.NO_MESSAGE).payload(ids));
|
||||
ResponseEntity<ResponseItem<List<RepositoryDepositConfiguration>>> getAvailableRepos(@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) {
|
||||
List<RepositoryDepositConfiguration> ids = this.depositManager.getAvailableRepos();
|
||||
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<RepositoryDepositConfiguration>>().status(ApiMessageCode.NO_MESSAGE).payload(ids));
|
||||
}
|
||||
|
||||
@RequestMapping(method = RequestMethod.GET, value = {"/getAccessToken"})
|
||||
public @ResponseBody
|
||||
ResponseEntity<ResponseItem<String>> getAccessToken(@RequestParam("repository") String repository, @RequestParam("code") String code, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws Exception {
|
||||
String accessToken = this.depositManager.authenticate(repository, code);
|
||||
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<String>().status(ApiMessageCode.NO_MESSAGE).payload(accessToken));
|
||||
}
|
||||
|
||||
@RequestMapping(method = RequestMethod.POST, value = {"/createDoi"})
|
||||
public ResponseEntity<ResponseItem<String>> createDoi(@RequestBody DepositRequest depositRequest, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) {
|
||||
try {
|
||||
String doi = this.depositManager.deposit(depositRequest, principal);
|
||||
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<String>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Successfully created DOI for Data Datamanagement Plan in question.").payload(doi));
|
||||
} catch (Exception e) {
|
||||
logger.error(e.getMessage(), e);
|
||||
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<String>().status(ApiMessageCode.ERROR_MESSAGE).message("Failed to create DOI for the Data Management Plan: " + e.getMessage()));
|
||||
}
|
||||
}
|
||||
}
|
||||
|
|
|
@ -48,6 +48,7 @@ import eu.eudat.models.data.datasetprofile.DatasetProfileListingModel;
|
|||
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
|
||||
import eu.eudat.models.data.datasetwizard.DatasetsToBeFinalized;
|
||||
import eu.eudat.models.data.dmp.*;
|
||||
import eu.eudat.models.data.doi.DepositRequest;
|
||||
import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
|
||||
import eu.eudat.models.data.entities.xmlmodels.dmpprofiledefinition.DataManagementPlanProfile;
|
||||
import eu.eudat.models.data.entities.xmlmodels.dmpprofiledefinition.Field;
|
||||
|
@ -63,6 +64,7 @@ import eu.eudat.models.data.userinfo.UserListingModel;
|
|||
import eu.eudat.queryable.QueryableList;
|
||||
import eu.eudat.types.Authorities;
|
||||
import eu.eudat.types.MetricNames;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFDocument;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFParagraph;
|
||||
import org.apache.poi.xwpf.usermodel.XWPFRun;
|
||||
|
@ -84,6 +86,7 @@ import javax.xml.bind.JAXBException;
|
|||
import javax.xml.bind.Unmarshaller;
|
||||
import java.io.*;
|
||||
import java.math.BigInteger;
|
||||
import java.nio.charset.StandardCharsets;
|
||||
import java.nio.file.Files;
|
||||
import java.time.Instant;
|
||||
import java.time.temporal.ChronoUnit;
|
||||
|
@ -2101,6 +2104,61 @@ public class DataManagementPlanManager {
|
|||
return finalDoi;
|
||||
}
|
||||
|
||||
public String createDoi(DepositRequest depositRequest, Principal principal) throws Exception {
|
||||
DMP dmp = this.apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(UUID.fromString(depositRequest.getDmpId()));
|
||||
if (!isUserOwnerOfDmp(dmp, principal))
|
||||
throw new Exception("User is not authorized to invoke this action");
|
||||
if (!dmp.getStatus().equals(DMP.DMPStatus.FINALISED.getValue()))
|
||||
throw new Exception("DMP is not finalized");
|
||||
/*if (dmp.getDoi() != null)
|
||||
throw new Exception("DMP already has a DOI");*/
|
||||
|
||||
FileEnvelope file = getWordDocument(depositRequest.getDmpId(), principal, configLoader);
|
||||
String name = file.getFilename().substring(0, file.getFilename().length() - 5);
|
||||
//File pdfFile = PDFUtils.convertToPDF(file, environment);
|
||||
String uuid = UUID.randomUUID().toString();
|
||||
File pdfFile = new File(environment.getProperty("temp.temp") + uuid + ".pdf");
|
||||
FileOutputStream output = new FileOutputStream(pdfFile);
|
||||
IOUtils.write("testing".getBytes(StandardCharsets.UTF_8), output);
|
||||
String fileName = name + ".pdf";
|
||||
output.close();
|
||||
ResponseEntity<byte[]> jsonFile;
|
||||
try {
|
||||
jsonFile = getRDAJsonDocument(depositRequest.getDmpId(), principal);
|
||||
} catch (Exception e) {
|
||||
throw e;
|
||||
}
|
||||
String previousDOI = this.getPreviousDOI(dmp.getGroupId(), dmp.getId());
|
||||
|
||||
DMPDepositModel dmpDepositModel = DMPToDepositMapper.fromDMP(dmp, pdfFile, fileName, jsonFile, previousDOI);
|
||||
|
||||
// String zenodoToken = "";
|
||||
// try {
|
||||
// if (this.userManager.isDOITokenValid(principal)) {
|
||||
// zenodoToken = principal.getZenodoToken();
|
||||
// }
|
||||
// } catch (NonValidTokenException e) {
|
||||
// zenodoToken = this.environment.getProperty("zenodo.access_token");
|
||||
// }
|
||||
|
||||
Optional<RepositoryDeposit> repo = this.repositoriesDeposit.stream().filter(x -> x.getConfiguration().getRepositoryId().equals(depositRequest.getRepositoryId())).findFirst();
|
||||
String finalDoi = repo.map(r -> {
|
||||
try {
|
||||
return r.deposit(dmpDepositModel, false, depositRequest.getAccessToken());
|
||||
} catch (Exception e) {
|
||||
logger.error(e.getMessage(), e);
|
||||
return null;
|
||||
}
|
||||
}).orElse(null);
|
||||
if (finalDoi != null) {
|
||||
//dmp.setDoi(finalDoi);
|
||||
//apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().createOrUpdate(dmp);
|
||||
}
|
||||
Files.deleteIfExists(file.getFile().toPath());
|
||||
|
||||
return finalDoi;
|
||||
}
|
||||
|
||||
/*
|
||||
* Misc
|
||||
* */
|
||||
|
|
|
@ -1,40 +1,62 @@
|
|||
package eu.eudat.logic.managers;
|
||||
|
||||
import eu.eudat.data.entities.DMP;
|
||||
import eu.eudat.depositinterface.models.DMPDepositModel;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDeposit;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||
import eu.eudat.exceptions.security.NonValidTokenException;
|
||||
import eu.eudat.logic.security.repositorydeposit.mapper.DMPToDepositMapper;
|
||||
import eu.eudat.logic.utilities.documents.helpers.FileEnvelope;
|
||||
import eu.eudat.logic.utilities.documents.pdf.PDFUtils;
|
||||
import eu.eudat.models.data.doi.DepositRequest;
|
||||
import eu.eudat.models.data.security.Principal;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.http.ResponseEntity;
|
||||
import org.springframework.stereotype.Component;
|
||||
|
||||
import java.io.File;
|
||||
import java.nio.file.Files;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
import java.util.Optional;
|
||||
|
||||
@Component
|
||||
public class DepositManager {
|
||||
private static final Logger logger = LoggerFactory.getLogger(DepositManager.class);
|
||||
|
||||
private List<RepositoryDeposit> repositories;
|
||||
private DataManagementPlanManager dataManagementPlanManager;
|
||||
|
||||
@Autowired
|
||||
public DepositManager(List<RepositoryDeposit> repositories){
|
||||
public DepositManager(List<RepositoryDeposit> repositories, DataManagementPlanManager dataManagementPlanManager){
|
||||
this.repositories = repositories;
|
||||
this.dataManagementPlanManager = dataManagementPlanManager;
|
||||
}
|
||||
|
||||
public List<String> getAvailableRepos() {
|
||||
List<String> repos = new ArrayList<>();
|
||||
public List<RepositoryDepositConfiguration> getAvailableRepos() {
|
||||
List<RepositoryDepositConfiguration> repos = new ArrayList<>();
|
||||
|
||||
// logger.info("\n\n-------REPOS------\n");
|
||||
// logger.info("-------------REPOS------------");
|
||||
// for (RepositoryDeposit r: this.repositories) {
|
||||
// logger.info("...Loaded Class: "
|
||||
// + r.getClass());
|
||||
// }
|
||||
// logger.info("\n-------------------------------");
|
||||
// logger.info("-------------------------------");
|
||||
for (RepositoryDeposit r: this.repositories) {
|
||||
repos.add(r.getConfiguration().getRepositoryId());
|
||||
repos.add(r.getConfiguration());
|
||||
}
|
||||
|
||||
//repos.add("dummyId");
|
||||
return repos;
|
||||
}
|
||||
|
||||
public String authenticate(String id, String code) {
|
||||
Optional<RepositoryDeposit> repo = repositories.stream().filter(x -> x.getConfiguration().getRepositoryId().equals(id)).findFirst();
|
||||
return repo.map(repositoryDeposit -> repositoryDeposit.authenticate(code)).orElse(null);
|
||||
}
|
||||
|
||||
public String deposit(DepositRequest depositRequest, Principal principal) throws Exception {
|
||||
return this.dataManagementPlanManager.createDoi(depositRequest, principal);
|
||||
}
|
||||
}
|
||||
|
|
|
@ -0,0 +1,29 @@
|
|||
package eu.eudat.models.data.doi;
|
||||
|
||||
public class DepositRequest {
|
||||
|
||||
private String repositoryId;
|
||||
private String dmpId;
|
||||
private String accessToken;
|
||||
|
||||
public String getRepositoryId() {
|
||||
return repositoryId;
|
||||
}
|
||||
public void setRepositoryId(String repositoryId) {
|
||||
this.repositoryId = repositoryId;
|
||||
}
|
||||
|
||||
public String getDmpId() {
|
||||
return dmpId;
|
||||
}
|
||||
public void setDmpId(String dmpId) {
|
||||
this.dmpId = dmpId;
|
||||
}
|
||||
|
||||
public String getAccessToken() {
|
||||
return accessToken;
|
||||
}
|
||||
public void setAccessToken(String accessToken) {
|
||||
this.accessToken = accessToken;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,39 @@
|
|||
<?xml version="1.0" encoding="UTF-8"?>
|
||||
<project xmlns="http://maven.apache.org/POM/4.0.0" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
|
||||
xsi:schemaLocation="http://maven.apache.org/POM/4.0.0 https://maven.apache.org/xsd/maven-4.0.0.xsd">
|
||||
<modelVersion>4.0.0</modelVersion>
|
||||
<parent>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-parent</artifactId>
|
||||
<version>2.7.4</version>
|
||||
<relativePath/>
|
||||
</parent>
|
||||
<groupId>eu.eudat.depositinterface</groupId>
|
||||
<artifactId>zenodoRepository</artifactId>
|
||||
<version>0.0.1-SNAPSHOT</version>
|
||||
<name>zenodoRepository</name>
|
||||
|
||||
<properties>
|
||||
<java.version>11</java.version>
|
||||
</properties>
|
||||
|
||||
<dependencies>
|
||||
<dependency>
|
||||
<groupId>org.springframework.boot</groupId>
|
||||
<artifactId>spring-boot-starter-web</artifactId>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>eu.eudat</groupId>
|
||||
<artifactId>depositinterface</artifactId>
|
||||
<version>1.0-SNAPSHOT</version>
|
||||
</dependency>
|
||||
|
||||
<dependency>
|
||||
<groupId>org.json</groupId>
|
||||
<artifactId>json</artifactId>
|
||||
<version>20160810</version>
|
||||
</dependency>
|
||||
</dependencies>
|
||||
|
||||
</project>
|
|
@ -0,0 +1,29 @@
|
|||
package eu.eudat.depositinterface.dummyrepository;
|
||||
|
||||
import eu.eudat.depositinterface.models.DMPDepositModel;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDeposit;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||
import org.springframework.stereotype.Component;
|
||||
|
||||
import static eu.eudat.depositinterface.repository.RepositoryDepositConfiguration.DepositAccountStatus.BothWaysDeposit;
|
||||
|
||||
@Component
|
||||
public class TestDummy implements RepositoryDeposit {
|
||||
@Override
|
||||
public String deposit(DMPDepositModel dmpDepositModel, boolean update, String repositoryAccessToken) throws Exception {
|
||||
return "test2";
|
||||
}
|
||||
|
||||
@Override
|
||||
public RepositoryDepositConfiguration getConfiguration() {
|
||||
RepositoryDepositConfiguration conf = new RepositoryDepositConfiguration();
|
||||
conf.setRepositoryId("Dummy");
|
||||
conf.setDepositAccountStatus(BothWaysDeposit.getValue());
|
||||
return conf;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String authenticate(String code) {
|
||||
return "accessToken";
|
||||
}
|
||||
}
|
|
@ -0,0 +1,7 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.config;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
public interface ConfigLoader {
|
||||
List<DOIFunder> getDOIFunders();
|
||||
}
|
|
@ -0,0 +1,50 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.config;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.env.Environment;
|
||||
import org.springframework.stereotype.Service;
|
||||
|
||||
import java.io.FileInputStream;
|
||||
import java.io.FileNotFoundException;
|
||||
import java.io.IOException;
|
||||
import java.io.InputStream;
|
||||
import java.util.ArrayList;
|
||||
import java.util.List;
|
||||
import java.util.Map;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
@Service("zenodoConfigLoader")
|
||||
public class ConfigLoaderImpl implements ConfigLoader{
|
||||
private static final Logger logger = LoggerFactory.getLogger(ConfigLoaderImpl.class);
|
||||
private static final ObjectMapper mapper = new ObjectMapper();
|
||||
|
||||
private List<DOIFunder> doiFunders = new ArrayList<>();
|
||||
|
||||
@Autowired
|
||||
private Environment environment;
|
||||
|
||||
@Override
|
||||
public List<DOIFunder> getDOIFunders() {
|
||||
if (doiFunders == null || doiFunders.isEmpty()) {
|
||||
try {
|
||||
List<Map<String, Object>> tempdoiFunders = mapper.readValue(getStreamFromPath(environment.getProperty("configuration.doi_funder")), List.class);
|
||||
doiFunders = tempdoiFunders.stream().map(map -> mapper.convertValue(map, DOIFunder.class) ).collect(Collectors.toList());
|
||||
} catch (IOException e) {
|
||||
logger.error(e.getLocalizedMessage(), e);
|
||||
}
|
||||
}
|
||||
return doiFunders;
|
||||
}
|
||||
|
||||
private InputStream getStreamFromPath(String filePath) {
|
||||
try {
|
||||
return new FileInputStream(filePath);
|
||||
} catch (FileNotFoundException e) {
|
||||
logger.info("loading from classpath");
|
||||
return getClass().getClassLoader().getResourceAsStream(filePath);
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,27 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.config;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||
|
||||
public class DOIFunder {
|
||||
|
||||
@JsonProperty("Funder")
|
||||
private String funder;
|
||||
@JsonProperty("DOI")
|
||||
private String DOI;
|
||||
|
||||
public String getFunder() {
|
||||
return funder;
|
||||
}
|
||||
|
||||
public void setFunder(String funder) {
|
||||
this.funder = funder;
|
||||
}
|
||||
|
||||
public String getDOI() {
|
||||
return DOI;
|
||||
}
|
||||
|
||||
public void setDOI(String DOI) {
|
||||
this.DOI = DOI;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,244 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.interfaces;
|
||||
|
||||
import com.fasterxml.jackson.databind.ObjectMapper;
|
||||
import eu.eudat.depositinterface.models.DMPDepositModel;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDeposit;
|
||||
import eu.eudat.depositinterface.repository.RepositoryDepositConfiguration;
|
||||
import eu.eudat.depositinterface.zenodorepository.config.ConfigLoader;
|
||||
import eu.eudat.depositinterface.zenodorepository.mapper.DMPToZenodoMapper;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
import org.springframework.beans.factory.annotation.Autowired;
|
||||
import org.springframework.core.io.FileSystemResource;
|
||||
import org.springframework.http.HttpEntity;
|
||||
import org.springframework.http.HttpHeaders;
|
||||
import org.springframework.http.MediaType;
|
||||
import org.springframework.http.ResponseEntity;
|
||||
import org.springframework.stereotype.Component;
|
||||
import org.springframework.util.LinkedMultiValueMap;
|
||||
import org.springframework.util.MultiValueMap;
|
||||
import org.springframework.web.client.HttpClientErrorException;
|
||||
import org.springframework.web.client.HttpServerErrorException;
|
||||
import org.springframework.web.client.RestTemplate;
|
||||
|
||||
import java.io.File;
|
||||
import java.io.FileOutputStream;
|
||||
import java.io.IOException;
|
||||
import java.nio.file.Files;
|
||||
import java.util.*;
|
||||
|
||||
import static eu.eudat.depositinterface.repository.RepositoryDepositConfiguration.DepositAccountStatus.BothWaysDeposit;
|
||||
|
||||
@Component
|
||||
public class ZenodoDeposit implements RepositoryDeposit {
|
||||
private static final Logger logger = LoggerFactory.getLogger(ZenodoDeposit.class);
|
||||
private static final ObjectMapper objectMapper = new ObjectMapper();
|
||||
|
||||
private ConfigLoader configLoader;
|
||||
|
||||
@Autowired
|
||||
public ZenodoDeposit(ConfigLoader configLoader){
|
||||
this.configLoader = configLoader;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String deposit(DMPDepositModel dmpDepositModel, boolean update, String zenodoToken) throws Exception {
|
||||
|
||||
RepositoryDepositConfiguration conf = this.getConfiguration();
|
||||
String zenodoUrl = conf.getRepositoryUrl();
|
||||
|
||||
// First step, post call to Zenodo, to create the entry.
|
||||
RestTemplate restTemplate = new RestTemplate();
|
||||
HttpHeaders headers = new HttpHeaders();
|
||||
headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
|
||||
headers.setContentType(MediaType.APPLICATION_JSON);
|
||||
eu.eudat.depositinterface.zenodorepository.models.ZenodoDeposit deposit = DMPToZenodoMapper.fromDMP(dmpDepositModel, "argos", "ARGOS", "https://argos.openaire.eu/", this.configLoader.getDOIFunders());
|
||||
|
||||
HttpEntity<eu.eudat.depositinterface.zenodorepository.models.ZenodoDeposit> request = new HttpEntity<>(deposit, headers);
|
||||
Map createResponse;
|
||||
LinkedHashMap<String, String> links;
|
||||
String previousDOI = dmpDepositModel.getPreviousDOI();
|
||||
String unpublishedUrl = null;
|
||||
String publishUrl;
|
||||
String finalDoi;
|
||||
try {
|
||||
|
||||
if (previousDOI == null) {
|
||||
String createUrl = zenodoUrl + "deposit/depositions" + "?access_token=" + zenodoToken;
|
||||
createResponse = restTemplate.postForEntity(createUrl, request, Map.class).getBody();
|
||||
links = (LinkedHashMap<String, String>) createResponse.get("links");
|
||||
finalDoi = (String) createResponse.get("conceptdoi");
|
||||
} else {
|
||||
unpublishedUrl = this.getUnpublishedDOI(zenodoUrl, previousDOI, zenodoToken, dmpDepositModel.getVersion());
|
||||
if (unpublishedUrl == null) {
|
||||
//It requires more than one step to create a new version
|
||||
//First, get the deposit related to the concept DOI
|
||||
String listUrl = zenodoUrl + "deposit/depositions" + "?q=conceptdoi:\"" + previousDOI + "\"&access_token=" + zenodoToken;
|
||||
ResponseEntity<Map[]> listResponses = restTemplate.getForEntity(listUrl, Map[].class);
|
||||
createResponse = listResponses.getBody()[0];
|
||||
links = (LinkedHashMap<String, String>) createResponse.get("links");
|
||||
//Second, make the new version (not in the links?)
|
||||
String newVersionUrl = links.get("self") + "/actions/newversion" + "?access_token=" + zenodoToken;
|
||||
createResponse = restTemplate.postForObject(newVersionUrl, null, Map.class);
|
||||
links = (LinkedHashMap<String, String>) createResponse.get("links");
|
||||
//Third, get the new deposit
|
||||
String latestDraftUrl = links.get("latest_draft") + "?access_token=" + zenodoToken;
|
||||
createResponse = restTemplate.getForObject(latestDraftUrl, Map.class);
|
||||
links = (LinkedHashMap<String, String>) createResponse.get("links");
|
||||
finalDoi = (String) createResponse.get("conceptdoi");
|
||||
//At this point it might fail to perform the next requests so enclose them with try catch
|
||||
try {
|
||||
//Forth, update the new deposit's metadata
|
||||
String updateUrl = links.get("self") + "?access_token=" + zenodoToken;
|
||||
restTemplate.put(updateUrl, request);
|
||||
//And finally remove pre-existing files from it
|
||||
String fileListUrl = links.get("self") + "/files" + "?access_token=" + zenodoToken;
|
||||
ResponseEntity<Map[]> fileListResponse = restTemplate.getForEntity(fileListUrl, Map[].class);
|
||||
for (Map file : fileListResponse.getBody()) {
|
||||
String fileDeleteUrl = links.get("self") + "/files/" + file.get("id") + "?access_token=" + zenodoToken;
|
||||
restTemplate.delete(fileDeleteUrl);
|
||||
}
|
||||
} catch (Exception e) {
|
||||
//In case the last two steps fail delete the latest Deposit it in order to create a new one (only one at a time is allowed)
|
||||
restTemplate.delete(latestDraftUrl);
|
||||
throw e;
|
||||
}
|
||||
}
|
||||
else {
|
||||
String listUrl = zenodoUrl + "deposit/depositions" + "?q=conceptdoi:\"" + previousDOI + "\"&access_token=" + zenodoToken;
|
||||
ResponseEntity<Map[]> listResponses = restTemplate.getForEntity(listUrl, Map[].class);
|
||||
createResponse = listResponses.getBody()[0];
|
||||
links = (LinkedHashMap<String, String>) createResponse.get("links");
|
||||
}
|
||||
}
|
||||
|
||||
if (!update) {
|
||||
if (unpublishedUrl == null) {
|
||||
// Second step, add the file to the entry.
|
||||
File pdfFile = dmpDepositModel.getPdfFile();
|
||||
String name = dmpDepositModel.getPdfFileName();
|
||||
String fileName = name + ".pdf";
|
||||
FileSystemResource fileSystemResource = new FileSystemResource(pdfFile);
|
||||
HttpEntity<FileSystemResource> addFileMapRequest = new HttpEntity<>(fileSystemResource, null);
|
||||
|
||||
String addFileUrl = links.get("bucket") + "/" + fileName + "?access_token=" + zenodoToken;
|
||||
restTemplate.put(addFileUrl, addFileMapRequest);
|
||||
|
||||
ResponseEntity<byte[]> jsonFile = dmpDepositModel.getRdaJson();
|
||||
UUID jsonFileUUID = UUID.randomUUID();
|
||||
File tempJsonFile = new File(jsonFileUUID + ".json"); // temp storage??
|
||||
try (FileOutputStream jsonFos = new FileOutputStream(tempJsonFile)) {
|
||||
jsonFos.write(jsonFile.getBody());
|
||||
jsonFos.flush();
|
||||
}
|
||||
fileSystemResource = new FileSystemResource(tempJsonFile);
|
||||
HttpHeaders jsonHeaders = new HttpHeaders();
|
||||
jsonHeaders.add(HttpHeaders.CONTENT_TYPE, MediaType.APPLICATION_OCTET_STREAM_VALUE);
|
||||
addFileMapRequest = new HttpEntity<>(fileSystemResource, jsonHeaders);
|
||||
String jsonFileName = jsonFile.getHeaders().get("Content-Disposition").get(0).substring(jsonFile.getHeaders().get("Content-Disposition").get(0).lastIndexOf('=') + 1);
|
||||
addFileUrl = links.get("bucket") + "/" + jsonFileName + "?access_token=" + zenodoToken;
|
||||
restTemplate.put(addFileUrl, addFileMapRequest);
|
||||
Files.deleteIfExists(tempJsonFile.toPath());
|
||||
|
||||
|
||||
// Third post call to Zenodo to publish the entry and return the DOI.
|
||||
publishUrl = links.get("publish") + "?access_token=" + zenodoToken;
|
||||
} else {
|
||||
publishUrl = unpublishedUrl + "?access_token=" + zenodoToken;
|
||||
}
|
||||
// if (dmp.isPublic()) {
|
||||
Map<String, Object> publishResponce = restTemplate.postForObject(publishUrl, "", Map.class);
|
||||
finalDoi = (String) publishResponce.get("conceptdoi");
|
||||
// }
|
||||
} else {
|
||||
Map<String, Object> editResponce = restTemplate.postForObject(links.get("edit") + "?access_token=" + zenodoToken, "", Map.class);
|
||||
restTemplate.put(links.get("self") + "?access_token=" + zenodoToken, request);
|
||||
Map<String, Object> publishResponce = restTemplate.postForObject(links.get("publish") + "?access_token=" + zenodoToken, "", Map.class);
|
||||
finalDoi = (String) publishResponce.get("conceptdoi");
|
||||
}
|
||||
|
||||
return finalDoi;
|
||||
} catch (HttpClientErrorException | HttpServerErrorException ex) {
|
||||
Map<String, String> parsedException = objectMapper.readValue(ex.getResponseBodyAsString(), HashMap.class);
|
||||
throw new IOException(parsedException.get("message"), ex);
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
@Override
|
||||
public RepositoryDepositConfiguration getConfiguration() {
|
||||
RepositoryDepositConfiguration conf = new RepositoryDepositConfiguration();
|
||||
conf.setDepositAccountStatus(BothWaysDeposit.getValue());
|
||||
conf.setRepositoryId("Zenodo");
|
||||
conf.setAccessToken("pcqw4LGLrhp17FF5GoXNCXakkEi82ThchZw7Tk4qh74VrDE3EmliG3UlhYtd");
|
||||
conf.setRepositoryUrl("https://sandbox.zenodo.org/api/");
|
||||
conf.setRepositoryLoginAccessTokenUrl("https://sandbox.zenodo.org/oauth/token");
|
||||
conf.setRepositoryLoginClientId("hEmVRNc1OzRmWyi2GDR3XVKbhG3OtfJXLXkkOGXx");
|
||||
conf.setRepositoryLoginClientSecret("7VSU0NjiAg0P3mv14wemMYy2XhvlmV6F7xoszxPH4ZDx98v8FdMpBbxlncqr");
|
||||
conf.setRepositoryLoginRedirectUri("http://localhost:4200/login/external/zenodo");
|
||||
return conf;
|
||||
}
|
||||
|
||||
@Override
|
||||
public String authenticate(String code){
|
||||
|
||||
RepositoryDepositConfiguration conf = this.getConfiguration();
|
||||
|
||||
RestTemplate restTemplate = new RestTemplate();
|
||||
HttpHeaders headers = new HttpHeaders();
|
||||
headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
|
||||
headers.setContentType(MediaType.MULTIPART_FORM_DATA);
|
||||
|
||||
MultiValueMap<String, String> map = new LinkedMultiValueMap<>();
|
||||
map.add("client_id", conf.getRepositoryLoginClientId());
|
||||
map.add("client_secret", conf.getRepositoryLoginClientSecret());
|
||||
map.add("grant_type", "authorization_code");
|
||||
map.add("code", code);
|
||||
map.add("redirect_uri", conf.getRepositoryLoginRedirectUri());
|
||||
HttpEntity<MultiValueMap<String, String>> request = new HttpEntity<>(map, headers);
|
||||
|
||||
try {
|
||||
Map<String, Object> values = restTemplate.postForObject(conf.getRepositoryLoginAccessTokenUrl(), request, Map.class);
|
||||
//ZenodoResponseToken zenodoResponseToken = new ZenodoResponseToken();
|
||||
Map<String, Object> user = (Map<String, Object>) values.get("user");
|
||||
// zenodoResponseToken.setUserId((String) user.get("id"));
|
||||
// zenodoResponseToken.setEmail((String) user.get("email"));
|
||||
// zenodoResponseToken.setExpiresIn((Integer) values.get("expires_in"));
|
||||
// zenodoResponseToken.setAccessToken((String) values.get("access_token"));
|
||||
// zenodoResponseToken.setRefreshToken((String) values.get("refresh_token"));
|
||||
|
||||
//return zenodoResponseToken;
|
||||
return (String) values.get("access_token");
|
||||
} catch (HttpClientErrorException ex) {
|
||||
logger.error(ex.getResponseBodyAsString(), ex);
|
||||
}
|
||||
|
||||
return null;
|
||||
}
|
||||
|
||||
private String getUnpublishedDOI(String zenodoUrl, String DOI, String token, Integer version) {
|
||||
try {
|
||||
RestTemplate restTemplate = new RestTemplate();
|
||||
HttpHeaders headers = new HttpHeaders();
|
||||
headers.setAccept(Collections.singletonList(MediaType.APPLICATION_JSON));
|
||||
headers.setContentType(MediaType.APPLICATION_JSON);
|
||||
Map createResponse = null;
|
||||
LinkedHashMap<String, String> links = null;
|
||||
LinkedHashMap<String, String> metadata = null;
|
||||
String listUrl = zenodoUrl + "deposit/depositions" + "?q=conceptdoi:\"" + DOI + "\"&access_token=" + token;
|
||||
ResponseEntity<Map[]> listResponses = restTemplate.getForEntity(listUrl, Map[].class);
|
||||
createResponse = listResponses.getBody()[0];
|
||||
metadata = (LinkedHashMap<String, String>) createResponse.get("metadata");
|
||||
links = (LinkedHashMap<String, String>) createResponse.get("links");
|
||||
|
||||
if (metadata.get("version").equals(version.toString())) {
|
||||
return links.get("publish");
|
||||
} else {
|
||||
return null;
|
||||
}
|
||||
}catch (Exception e) {
|
||||
logger.warn(e.getMessage(), e);
|
||||
return null;
|
||||
}
|
||||
}
|
||||
}
|
|
@ -0,0 +1,119 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.mapper;
|
||||
|
||||
import eu.eudat.depositinterface.models.DMPDepositModel;
|
||||
import eu.eudat.depositinterface.models.OrganisationDepositModel;
|
||||
import eu.eudat.depositinterface.models.UserDMPDepositModel;
|
||||
import eu.eudat.depositinterface.zenodorepository.config.DOIFunder;
|
||||
import eu.eudat.depositinterface.zenodorepository.models.*;
|
||||
|
||||
import java.time.Instant;
|
||||
import java.util.*;
|
||||
import java.util.stream.Collectors;
|
||||
|
||||
public class DMPToZenodoMapper {
|
||||
|
||||
public static ZenodoDeposit fromDMP(DMPDepositModel dmp, String zenodoCommunity, String zenodoAffiliation, String domain, List<DOIFunder> doiFunders) {
|
||||
Map<String, Object> extraProperties = dmp.getExtraProperties() != null ? new org.json.JSONObject(dmp.getExtraProperties()).toMap() : new HashMap<>();
|
||||
ZenodoDeposit deposit = new ZenodoDeposit();
|
||||
deposit.setMetadata(new ZenodoDepositMetadata());
|
||||
deposit.getMetadata().setTitle(dmp.getLabel());
|
||||
deposit.getMetadata().setUploadType("publication");
|
||||
deposit.getMetadata().setPublicationType("datamanagementplan");
|
||||
deposit.getMetadata().setDescription((dmp.getDescription() != null && !dmp.getDescription().isEmpty() ? dmp.getDescription() : "<p></p>"));
|
||||
deposit.getMetadata().setVersion(String.valueOf(dmp.getVersion()));
|
||||
if(zenodoCommunity != null && !zenodoAffiliation.isEmpty()) {
|
||||
ZenodoComunity community = new ZenodoComunity();
|
||||
community.setIdentifier(zenodoCommunity);
|
||||
deposit.getMetadata().setCommunities(Collections.singletonList(community));
|
||||
}
|
||||
if (extraProperties.get("visible") == null) {
|
||||
deposit.getMetadata().setAccessRight(ZenodoAccessRight.RESTRICTED);
|
||||
deposit.getMetadata().setAccessConditions("");
|
||||
} else {
|
||||
if (((Boolean) extraProperties.get("visible"))) {
|
||||
Instant publicationDate = Instant.parse(extraProperties.get("publicDate").toString());
|
||||
if (publicationDate.isBefore(Instant.now())) {
|
||||
deposit.getMetadata().setAccessRight(ZenodoAccessRight.OPEN);
|
||||
} else {
|
||||
deposit.getMetadata().setAccessRight(ZenodoAccessRight.EMBARGOED);
|
||||
deposit.getMetadata().setEmbargoDate(publicationDate.toString());
|
||||
}
|
||||
|
||||
if (extraProperties.get("license") != null) {
|
||||
deposit.getMetadata().setLicense(((Map<?, ?>) extraProperties.get("license")).get("pid").toString());
|
||||
}
|
||||
} else {
|
||||
deposit.getMetadata().setAccessRight(ZenodoAccessRight.RESTRICTED);
|
||||
deposit.getMetadata().setAccessConditions("");
|
||||
}
|
||||
}
|
||||
if (dmp.isPublic()) {
|
||||
ZenodoRelator relator = new ZenodoRelator();
|
||||
relator.setIdentifier(domain + "/external/zenodo/" + dmp.getId().toString());
|
||||
relator.setRelation("isIdenticalTo");
|
||||
deposit.getMetadata().setRelatedIdentifiers(Collections.singletonList(relator));
|
||||
}
|
||||
deposit.getMetadata().setContributors(new LinkedList<>());
|
||||
List<ZenodoContributor> contributors = dmp.getUsers().stream().map(userDMP -> {
|
||||
ZenodoContributor contributor = new ZenodoContributor();
|
||||
contributor.setName(userDMP.getUser().getName());
|
||||
contributor.setType("ProjectMember");
|
||||
if (dmp.getOrganisations() != null && !dmp.getOrganisations().isEmpty()) {
|
||||
contributor.setAffiliation(dmp.getOrganisations()
|
||||
.stream().map(OrganisationDepositModel::getLabel).collect(Collectors.joining(", ")));
|
||||
} else {
|
||||
if(zenodoAffiliation != null && !zenodoAffiliation.isEmpty()) {
|
||||
contributor.setAffiliation(zenodoAffiliation);
|
||||
}
|
||||
}
|
||||
return contributor;
|
||||
}).collect(Collectors.toList());
|
||||
|
||||
List<ZenodoContributor> researchers = dmp.getResearchers().stream().map(researcher -> {
|
||||
ZenodoContributor contributor = new ZenodoContributor();
|
||||
contributor.setName(researcher.getLabel());
|
||||
contributor.setType("Researcher");
|
||||
String referenceHead = researcher.getReference().split(":")[0];
|
||||
String referenceTail = researcher.getReference().replace(referenceHead + ":", "");
|
||||
contributor.setAffiliation(referenceHead);
|
||||
if (referenceHead.equalsIgnoreCase("ORCID")) {
|
||||
contributor.setOrcid(referenceTail);
|
||||
}
|
||||
return contributor;
|
||||
}).collect(Collectors.toList());
|
||||
|
||||
deposit.getMetadata().getContributors().addAll(contributors);
|
||||
deposit.getMetadata().getContributors().addAll(researchers);
|
||||
|
||||
if (dmp.getGrant().getReference() == null) {
|
||||
dmp.getGrant().setReference("dmp:" + dmp.getGrant().getId());
|
||||
}
|
||||
String grantReferenceHead = dmp.getGrant().getReference().split(":")[0];
|
||||
if (grantReferenceHead.equals("openaire")) {
|
||||
String grantReferenceTail = dmp.getGrant().getReference().split(":")[3];
|
||||
DOIFunder doiFunder = doiFunders.stream()
|
||||
.filter(doiFunder1 -> dmp.getGrant().getFunder().getLabel().contains(doiFunder1.getFunder()) || doiFunder1.getFunder().contains(dmp.getGrant().getFunder().getLabel()))
|
||||
.findFirst().orElse(null);
|
||||
if (doiFunder != null) {
|
||||
String finalId = doiFunder.getDOI() + "::" + grantReferenceTail;
|
||||
ZenodoGrant grant = new ZenodoGrant();
|
||||
grant.setId(finalId);
|
||||
deposit.getMetadata().setGrants(Collections.singletonList(grant));
|
||||
}
|
||||
}
|
||||
ZenodoContributor creator = new ZenodoContributor();
|
||||
creator.setName(dmp.getUsers().stream().filter(userDMP -> userDMP.getRole().equals(UserDMPDepositModel.UserDMPRoles.OWNER.getValue())).findFirst().get().getUser().getName());
|
||||
if (dmp.getOrganisations() != null && !dmp.getOrganisations().isEmpty()) {
|
||||
creator.setAffiliation(dmp.getOrganisations()
|
||||
.stream().map(OrganisationDepositModel::getLabel).collect(Collectors.joining(", ")));
|
||||
} else {
|
||||
if(zenodoAffiliation != null && !zenodoAffiliation.isEmpty()) {
|
||||
creator.setAffiliation(zenodoAffiliation);
|
||||
}
|
||||
}
|
||||
deposit.getMetadata().setCreators(Collections.singletonList(creator));
|
||||
|
||||
return deposit;
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,18 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonValue;
|
||||
|
||||
public enum ZenodoAccessRight {
|
||||
RESTRICTED("restricted"), EMBARGOED("embargoed"), OPEN("open");
|
||||
|
||||
private final String value;
|
||||
|
||||
ZenodoAccessRight(String value) {
|
||||
this.value = value;
|
||||
}
|
||||
|
||||
@JsonValue
|
||||
public String getValue() {
|
||||
return value;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,19 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
public class ZenodoComunity {
|
||||
|
||||
private String identifier;
|
||||
|
||||
public String getIdentifier() {
|
||||
return identifier;
|
||||
}
|
||||
|
||||
public void setIdentifier(String identifier) {
|
||||
this.identifier = identifier;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,45 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
public class ZenodoContributor {
|
||||
private String name;
|
||||
private String type;
|
||||
private String affiliation;
|
||||
private String orcid;
|
||||
|
||||
public String getName() {
|
||||
return name;
|
||||
}
|
||||
|
||||
public void setName(String name) {
|
||||
this.name = name;
|
||||
}
|
||||
|
||||
public String getType() {
|
||||
return type;
|
||||
}
|
||||
|
||||
public void setType(String type) {
|
||||
this.type = type;
|
||||
}
|
||||
|
||||
public String getAffiliation() {
|
||||
return affiliation;
|
||||
}
|
||||
|
||||
public void setAffiliation(String affiliation) {
|
||||
this.affiliation = affiliation;
|
||||
}
|
||||
|
||||
public String getOrcid() {
|
||||
return orcid;
|
||||
}
|
||||
|
||||
public void setOrcid(String orcid) {
|
||||
this.orcid = orcid;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,19 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
public class ZenodoDeposit {
|
||||
|
||||
private ZenodoDepositMetadata metadata;
|
||||
|
||||
public ZenodoDepositMetadata getMetadata() {
|
||||
return metadata;
|
||||
}
|
||||
|
||||
public void setMetadata(ZenodoDepositMetadata metadata) {
|
||||
this.metadata = metadata;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,158 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
import com.fasterxml.jackson.annotation.JsonProperty;
|
||||
|
||||
import java.util.List;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
public class ZenodoDepositMetadata {
|
||||
|
||||
private String title;
|
||||
|
||||
@JsonProperty("upload_type")
|
||||
private String uploadType;
|
||||
|
||||
@JsonProperty("publication_type")
|
||||
private String publicationType;
|
||||
|
||||
private String description;
|
||||
|
||||
private String version;
|
||||
|
||||
private List<ZenodoComunity> communities;
|
||||
|
||||
@JsonProperty("access_right")
|
||||
private ZenodoAccessRight accessRight;
|
||||
|
||||
@JsonProperty("access_conditions")
|
||||
private String accessConditions;
|
||||
|
||||
@JsonProperty("embargo_date")
|
||||
private String embargoDate;
|
||||
|
||||
private String license;
|
||||
|
||||
@JsonProperty("related_identifiers")
|
||||
private List<ZenodoRelator> relatedIdentifiers;
|
||||
|
||||
private List<ZenodoContributor> contributors;
|
||||
|
||||
private List<ZenodoGrant> grants;
|
||||
|
||||
private List<ZenodoContributor> creators;
|
||||
|
||||
public String getTitle() {
|
||||
return title;
|
||||
}
|
||||
|
||||
public void setTitle(String title) {
|
||||
this.title = title;
|
||||
}
|
||||
|
||||
public String getUploadType() {
|
||||
return uploadType;
|
||||
}
|
||||
|
||||
public void setUploadType(String uploadType) {
|
||||
this.uploadType = uploadType;
|
||||
}
|
||||
|
||||
public String getPublicationType() {
|
||||
return publicationType;
|
||||
}
|
||||
|
||||
public void setPublicationType(String publicationType) {
|
||||
this.publicationType = publicationType;
|
||||
}
|
||||
|
||||
public String getDescription() {
|
||||
return description;
|
||||
}
|
||||
|
||||
public void setDescription(String description) {
|
||||
this.description = description;
|
||||
}
|
||||
|
||||
public String getVersion() {
|
||||
return version;
|
||||
}
|
||||
|
||||
public void setVersion(String version) {
|
||||
this.version = version;
|
||||
}
|
||||
|
||||
public List<ZenodoComunity> getCommunities() {
|
||||
return communities;
|
||||
}
|
||||
|
||||
public void setCommunities(List<ZenodoComunity> communities) {
|
||||
this.communities = communities;
|
||||
}
|
||||
|
||||
public ZenodoAccessRight getAccessRight() {
|
||||
return accessRight;
|
||||
}
|
||||
|
||||
public void setAccessRight(ZenodoAccessRight accessRight) {
|
||||
this.accessRight = accessRight;
|
||||
}
|
||||
|
||||
public String getAccessConditions() {
|
||||
return accessConditions;
|
||||
}
|
||||
|
||||
public void setAccessConditions(String accessConditions) {
|
||||
this.accessConditions = accessConditions;
|
||||
}
|
||||
|
||||
public String getEmbargoDate() {
|
||||
return embargoDate;
|
||||
}
|
||||
|
||||
public void setEmbargoDate(String embargoDate) {
|
||||
this.embargoDate = embargoDate;
|
||||
}
|
||||
|
||||
public String getLicense() {
|
||||
return license;
|
||||
}
|
||||
|
||||
public void setLicense(String license) {
|
||||
this.license = license;
|
||||
}
|
||||
|
||||
public List<ZenodoRelator> getRelatedIdentifiers() {
|
||||
return relatedIdentifiers;
|
||||
}
|
||||
|
||||
public void setRelatedIdentifiers(List<ZenodoRelator> relatedIdentifiers) {
|
||||
this.relatedIdentifiers = relatedIdentifiers;
|
||||
}
|
||||
|
||||
public List<ZenodoContributor> getContributors() {
|
||||
return contributors;
|
||||
}
|
||||
|
||||
public void setContributors(List<ZenodoContributor> contributors) {
|
||||
this.contributors = contributors;
|
||||
}
|
||||
|
||||
public List<ZenodoGrant> getGrants() {
|
||||
return grants;
|
||||
}
|
||||
|
||||
public void setGrants(List<ZenodoGrant> grants) {
|
||||
this.grants = grants;
|
||||
}
|
||||
|
||||
public List<ZenodoContributor> getCreators() {
|
||||
return creators;
|
||||
}
|
||||
|
||||
public void setCreators(List<ZenodoContributor> creators) {
|
||||
this.creators = creators;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,18 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
public class ZenodoGrant {
|
||||
private String id;
|
||||
|
||||
public String getId() {
|
||||
return id;
|
||||
}
|
||||
|
||||
public void setId(String id) {
|
||||
this.id = id;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,28 @@
|
|||
package eu.eudat.depositinterface.zenodorepository.models;
|
||||
|
||||
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
|
||||
import com.fasterxml.jackson.annotation.JsonInclude;
|
||||
|
||||
@JsonIgnoreProperties(ignoreUnknown = true)
|
||||
@JsonInclude(JsonInclude.Include.NON_NULL)
|
||||
public class ZenodoRelator {
|
||||
|
||||
private String identifier;
|
||||
private String relation;
|
||||
|
||||
public String getIdentifier() {
|
||||
return identifier;
|
||||
}
|
||||
|
||||
public void setIdentifier(String identifier) {
|
||||
this.identifier = identifier;
|
||||
}
|
||||
|
||||
public String getRelation() {
|
||||
return relation;
|
||||
}
|
||||
|
||||
public void setRelation(String relation) {
|
||||
this.relation = relation;
|
||||
}
|
||||
}
|
|
@ -0,0 +1,70 @@
|
|||
[
|
||||
{
|
||||
"Funder": "Australian Research Council",
|
||||
"DOI": "10.13039/501100000923"
|
||||
},
|
||||
{
|
||||
"Funder": "Austrian Science Fund",
|
||||
"DOI": "10.13039/501100002428"
|
||||
},
|
||||
{
|
||||
"Funder": "European Commission",
|
||||
"DOI": "10.13039/501100000780"
|
||||
},
|
||||
{
|
||||
"Funder": "European Environment Agency",
|
||||
"DOI": "10.13039/501100000806"
|
||||
},
|
||||
{
|
||||
"Funder": "Academy of Finland",
|
||||
"DOI": "10.13039/501100002341"
|
||||
},
|
||||
{
|
||||
"Funder": "Hrvatska Zaklada za Znanost",
|
||||
"DOI": "10.13039/501100004488"
|
||||
},
|
||||
{
|
||||
"Funder": "Fundação para a Ciência e a Tecnologia",
|
||||
"DOI": "10.13039/501100001871"
|
||||
},
|
||||
{
|
||||
"Funder": "Ministarstvo Prosvete, Nauke i Tehnološkog Razvoja",
|
||||
"DOI": "10.13039/501100004564"
|
||||
},
|
||||
{
|
||||
"Funder": "Ministarstvo Znanosti, Obrazovanja i Sporta",
|
||||
"DOI": "10.13039/501100006588"
|
||||
},
|
||||
{
|
||||
"Funder": "National Health and Medical Research Council",
|
||||
"DOI": "10.13039/501100000925"
|
||||
},
|
||||
{
|
||||
"Funder": "National Institutes of Health",
|
||||
"DOI": "10.13039/100000002"
|
||||
},
|
||||
{
|
||||
"Funder": "National Science Foundation",
|
||||
"DOI": "10.13039/100000001"
|
||||
},
|
||||
{
|
||||
"Funder": "Nederlandse Organisatie voor Wetenschappelijk Onderzoek",
|
||||
"DOI": "10.13039/501100003246"
|
||||
},
|
||||
{
|
||||
"Funder": "Research Councils",
|
||||
"DOI": "10.13039/501100000690"
|
||||
},
|
||||
{
|
||||
"Funder": "Schweizerischer Nationalfonds zur Förderung der wissenschaftlichen Forschung",
|
||||
"DOI": "10.13039/501100001711"
|
||||
},
|
||||
{
|
||||
"Funder": "Science Foundation Ireland",
|
||||
"DOI": "10.13039/501100001602"
|
||||
},
|
||||
{
|
||||
"Funder": "Wellcome Trust",
|
||||
"DOI": "10.13039/100004440"
|
||||
}
|
||||
]
|
|
@ -0,0 +1 @@
|
|||
configuration.doi_funder=DOI_Funder.json
|
|
@ -0,0 +1,5 @@
|
|||
export enum DepositConfigurationStatus {
|
||||
System = 0,
|
||||
User = 1,
|
||||
BothSystemAndUser = 2
|
||||
}
|
|
@ -0,0 +1,11 @@
|
|||
import { DepositConfigurationStatus } from "@app/core/common/enum/deposit-configuration-status";
|
||||
|
||||
export class DepositConfigurationModel {
|
||||
depositAccountStatus: DepositConfigurationStatus;
|
||||
repositoryId: string;
|
||||
accessToken: string;
|
||||
repositoryUrl: string;
|
||||
repositoryLoginAccessTokenUrl: string;
|
||||
repositoryLoginClientId: string;
|
||||
repositoryLoginClientSecret: string;
|
||||
}
|
|
@ -0,0 +1,5 @@
|
|||
export class DepositRequest {
|
||||
repositoryId: string;
|
||||
dmpId: string;
|
||||
accessToken: string;
|
||||
}
|
|
@ -1,5 +1,7 @@
|
|||
import { HttpClient, HttpHeaders } from '@angular/common/http';
|
||||
import { Injectable } from '@angular/core';
|
||||
import { DepositConfigurationModel } from '@app/core/model/deposit/deposit-configuration';
|
||||
import { DepositRequest } from '@app/core/model/deposit/deposit-request';
|
||||
import { Observable } from 'rxjs';
|
||||
import { ConfigurationService } from '../configuration/configuration.service';
|
||||
import { BaseHttpService } from '../http/base-http.service';
|
||||
|
@ -14,7 +16,19 @@ export class DepositRepositoriesService {
|
|||
this.actionUrl = configurationService.server + 'deposit/';
|
||||
}
|
||||
|
||||
getAvailableRepos(): Observable<string[]> {
|
||||
return this.http.get<string[]>(this.actionUrl + 'repos/', { headers: this.headers });
|
||||
getAvailableRepos(): Observable<DepositConfigurationModel[]> {
|
||||
return this.http.get<DepositConfigurationModel[]>(this.actionUrl + 'repos', { headers: this.headers });
|
||||
}
|
||||
|
||||
getAccessToken(repository: string, code: string): Observable<string> {
|
||||
return this.http.get<string>(this.actionUrl + 'getAccessToken?repository=' + repository + '&code=' + code, { headers: this.headers });
|
||||
}
|
||||
|
||||
createDoi(repositoryId: string, dmpId: string, accessToken: string): Observable<string> {
|
||||
const depositRequest = new DepositRequest();
|
||||
depositRequest.repositoryId = repositoryId;
|
||||
depositRequest.dmpId = dmpId;
|
||||
depositRequest.accessToken = accessToken;
|
||||
return this.http.post<string>(this.actionUrl + 'createDoi', depositRequest, { headers: this.headers });
|
||||
}
|
||||
}
|
||||
|
|
|
@ -5,21 +5,17 @@
|
|||
</div>
|
||||
</div>
|
||||
<div *ngIf="inputRepos.length > 0">
|
||||
<mat-form-field appearance="outline">
|
||||
<mat-select placeholder="Repositories" multiple>
|
||||
<mat-option *ngFor="let repo of inputRepos">
|
||||
{{ repo }}
|
||||
</mat-option>
|
||||
</mat-select>
|
||||
</mat-form-field>
|
||||
<mat-action-list>
|
||||
<button mat-list-item *ngFor="let repo of inputRepos" (click)="deposit(repo)"> {{ repo.repositoryId }} </button>
|
||||
</mat-action-list>
|
||||
</div>
|
||||
<div *ngIf="inputRepos.length === 0" class="emptyList">{{ 'DMP-FINALISE-DIALOG.EMPTY' | translate }} </div>
|
||||
<div *ngIf="inputRepos.length === 0" class="emptyList">No publishing repositories so far</div>
|
||||
|
||||
<div mat-dialog-actions class="d-flex justify-content-end mb-1">
|
||||
<div class="col-auto">
|
||||
<button mat-raised-button cdkFocusInitial (click)="close()" class="cancel-btn">{{ data.cancelButton }}</button>
|
||||
</div>
|
||||
<div class="col-auto">
|
||||
<!-- <div class="col-auto">
|
||||
<button mat-raised-button class="submit-btn" (click)="onSubmit()">{{ data.confirmButton }}</button>
|
||||
</div>
|
||||
</div> -->
|
||||
</div>
|
|
@ -1,6 +1,17 @@
|
|||
import { Component, Inject, OnInit } from '@angular/core';
|
||||
import { MatDialog, MatDialogRef, MAT_DIALOG_DATA } from '@angular/material/dialog';
|
||||
import { DepositConfigurationStatus } from '@app/core/common/enum/deposit-configuration-status';
|
||||
import { DepositConfigurationModel } from '@app/core/model/deposit/deposit-configuration';
|
||||
import { DmpOverviewModel } from '@app/core/model/dmp/dmp-overview';
|
||||
import { DepositRepositoriesService } from '@app/core/services/deposit-repositories/deposit-repositories.service';
|
||||
import { DmpService } from '@app/core/services/dmp/dmp.service';
|
||||
import { SnackBarNotificationLevel, UiNotificationService } from '@app/core/services/notification/ui-notification-service';
|
||||
import { Oauth2DialogService } from '@app/ui/misc/oauth2-dialog/service/oauth2-dialog.service';
|
||||
import { BaseComponent } from '@common/base/base.component';
|
||||
import { ConfirmationDialogComponent } from '@common/modules/confirmation-dialog/confirmation-dialog.component';
|
||||
import { MultipleChoiceDialogComponent } from '@common/modules/multiple-choice-dialog/multiple-choice-dialog.component';
|
||||
import { TranslateService } from '@ngx-translate/core';
|
||||
import { takeUntil } from 'rxjs/operators';
|
||||
|
||||
@Component({
|
||||
selector: 'app-dmp-deposit-dialog',
|
||||
|
@ -9,15 +20,23 @@ import { BaseComponent } from '@common/base/base.component';
|
|||
})
|
||||
export class DmpDepositDialogComponent extends BaseComponent implements OnInit {
|
||||
|
||||
inputRepos: string[];
|
||||
inputRepos: DepositConfigurationModel[];
|
||||
outputRepos: string[];
|
||||
dmp: DmpOverviewModel;
|
||||
|
||||
constructor(
|
||||
private dmpService: DmpService,
|
||||
private depositRepositoriesService: DepositRepositoriesService,
|
||||
public dialogRef: MatDialogRef<DmpDepositDialogComponent>,
|
||||
private dialog: MatDialog,
|
||||
private language: TranslateService,
|
||||
private uiNotificationService: UiNotificationService,
|
||||
private oauth2DialogService: Oauth2DialogService,
|
||||
@Inject(MAT_DIALOG_DATA) public data: any
|
||||
) {
|
||||
super();
|
||||
this.inputRepos = data['depositRepos'];
|
||||
this.inputRepos = data['depositRepos'][0];
|
||||
this.dmp = data['depositRepos'][1];
|
||||
this.outputRepos = [];
|
||||
}
|
||||
|
||||
|
@ -32,4 +51,75 @@ export class DmpDepositDialogComponent extends BaseComponent implements OnInit {
|
|||
this.dialogRef.close(this.outputRepos);
|
||||
}
|
||||
|
||||
deposit(repo: DepositConfigurationModel) {
|
||||
|
||||
if(repo.depositAccountStatus == DepositConfigurationStatus.BothSystemAndUser){
|
||||
|
||||
const dialogRef = this.dialog.open(MultipleChoiceDialogComponent, {
|
||||
maxWidth: '600px',
|
||||
restoreFocus: false,
|
||||
data: {
|
||||
message: 'Which account would you like to use?',//this.language.instant('GENERAL.ERRORS.HTTP-REQUEST-ERROR'),
|
||||
titles: ['Login with ' + repo.repositoryId/*this.language.instant('DMP-OVERVIEW.MULTIPLE-DIALOG.ZENODO-LOGIN')*/, this.language.instant('DMP-OVERVIEW.MULTIPLE-DIALOG.USE-DEFAULT')]
|
||||
}
|
||||
});
|
||||
dialogRef.afterClosed().pipe(takeUntil(this._destroyed)).subscribe(result => {
|
||||
switch (result) {
|
||||
case 0:
|
||||
this.showOauth2Dialog('https://sandbox.zenodo.org/oauth/authorize'+ '?client_id=' + repo.repositoryLoginClientId
|
||||
+ '&response_type=code&scope=deposit:write+deposit:actions+user:email&state=astate&redirect_uri='
|
||||
+ 'http://localhost:4200/login/external/zenodo', repo, this.dmp);
|
||||
break;
|
||||
case 1:
|
||||
// this.dmpService.getDoi(dmp.id)
|
||||
// .pipe(takeUntil(this._destroyed))
|
||||
// .subscribe(
|
||||
// complete => {
|
||||
// this.onDOICallbackSuccess();
|
||||
// this.dmp.doi = complete;
|
||||
// },
|
||||
// error => this.onDeleteCallbackError(error)
|
||||
// );
|
||||
break;
|
||||
}
|
||||
});
|
||||
|
||||
}
|
||||
}
|
||||
|
||||
onDOICallbackSuccess(): void {
|
||||
this.uiNotificationService.snackBarNotification(this.language.instant('DMP-EDITOR.SNACK-BAR.SUCCESSFUL-DOI'), SnackBarNotificationLevel.Success);
|
||||
}
|
||||
|
||||
onDeleteCallbackError(error) {
|
||||
this.uiNotificationService.snackBarNotification(error.error.message ? this.language.instant(error.error.message) : this.language.instant('GENERAL.SNACK-BAR.UNSUCCESSFUL-DELETE'), SnackBarNotificationLevel.Error);
|
||||
}
|
||||
|
||||
showOauth2Dialog(url: string, repo: DepositConfigurationModel, dmp: DmpOverviewModel) {
|
||||
this.oauth2DialogService.login(url)
|
||||
.pipe(takeUntil(this._destroyed))
|
||||
.subscribe(result => {
|
||||
if (result !== undefined) {
|
||||
if (result.oauthCode !== undefined && result.oauthCode !== null) {
|
||||
this.depositRepositoriesService.getAccessToken(repo.repositoryId, result.oauthCode)
|
||||
.pipe(takeUntil(this._destroyed))
|
||||
.subscribe(token => {
|
||||
console.log(token);
|
||||
this.depositRepositoriesService.createDoi(repo.repositoryId, dmp.id, token)
|
||||
.pipe(takeUntil(this._destroyed))
|
||||
.subscribe(doi =>{
|
||||
console.log(doi);
|
||||
});
|
||||
});
|
||||
// this.userService.registerDOIToken(result.oauthCode, this.configurationService.app + 'oauth2')
|
||||
// .pipe(takeUntil(this._destroyed))
|
||||
// .subscribe(() => {
|
||||
// this.hasDOIToken = true;
|
||||
// this.showConfirmationDOIDialog(dmp);
|
||||
// });
|
||||
}
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
@ -43,6 +43,7 @@ import { MatomoService } from '@app/core/services/matomo/matomo-service';
|
|||
import { PopupNotificationDialogComponent } from '@app/library/notification/popup/popup-notification.component';
|
||||
import { DepositRepositoriesService } from '@app/core/services/deposit-repositories/deposit-repositories.service';
|
||||
import { DmpDepositDialogComponent } from '../editor/dmp-deposit-dialog/dmp-deposit-dialog.component';
|
||||
import { DepositConfigurationModel } from '@app/core/model/deposit/deposit-configuration';
|
||||
|
||||
@Component({
|
||||
selector: 'app-dmp-overview',
|
||||
|
@ -70,7 +71,7 @@ export class DmpOverviewComponent extends BaseComponent implements OnInit {
|
|||
@ViewChild('doi')
|
||||
doi: ElementRef;
|
||||
|
||||
depositRepos: String[];
|
||||
depositRepos: DepositConfigurationModel[];
|
||||
|
||||
formGroup: FormGroup;
|
||||
|
||||
|
@ -589,18 +590,24 @@ export class DmpOverviewComponent extends BaseComponent implements OnInit {
|
|||
.subscribe(
|
||||
repos => {
|
||||
this.depositRepos = repos;
|
||||
const dialogRef = this.dialog.open(DmpDepositDialogComponent, {
|
||||
maxWidth: '600px',
|
||||
restoreFocus: false,
|
||||
autoFocus: false,
|
||||
data: {
|
||||
depositRepos: [this.depositRepos, this.dmp],
|
||||
message: "Select repositories to deposit",//this.language.instant('GENERAL.CONFIRMATION-DIALOG.FINALIZE-ITEM'),
|
||||
confirmButton: "Proceed to authentication",//this.language.instant('DMP-FINALISE-DIALOG.SUBMIT'),
|
||||
cancelButton: "Cancel",//this.language.instant('GENERAL.CONFIRMATION-DIALOG.ACTIONS.CANCEL'),
|
||||
}
|
||||
});
|
||||
dialogRef.afterClosed().pipe(takeUntil(this._destroyed)).subscribe((result: string[]) => {
|
||||
if (result) {
|
||||
this.dmp.doi = result[0];
|
||||
}
|
||||
});
|
||||
}
|
||||
);
|
||||
const dialogRef = this.dialog.open(DmpDepositDialogComponent, {
|
||||
restoreFocus: false,
|
||||
autoFocus: false,
|
||||
data: {
|
||||
depositRepos: this.depositRepos,
|
||||
message: "Select repositories to deposit",//this.language.instant('GENERAL.CONFIRMATION-DIALOG.FINALIZE-ITEM'),
|
||||
confirmButton: "Proceed to authentication",//this.language.instant('DMP-FINALISE-DIALOG.SUBMIT'),
|
||||
cancelButton: "Cancel",//this.language.instant('GENERAL.CONFIRMATION-DIALOG.ACTIONS.CANCEL'),
|
||||
}
|
||||
});
|
||||
}
|
||||
|
||||
finalize(dmp: DmpOverviewModel) {
|
||||
|
|
Loading…
Reference in New Issue