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changes in dmp deposit model

This commit is contained in:
Bernaldo Mihasi 2023-03-27 14:59:47 +03:00
parent 969df0357a
commit 376bb2ca53
1 changed files with 68 additions and 4 deletions
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72
dmp-backend/web/src/main/java/eu/eudat/logic/security/repositorydeposit/mapper/DMPToDepositMapper.java
View File

@ -1,29 +1,45 @@
package eu.eudat.logic.security.repositorydeposit.mapper;
import com.fasterxml.jackson.core.JsonProcessingException;
import com.fasterxml.jackson.databind.JsonMappingException;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.entities.*;
import eu.eudat.depositinterface.models.*;
import org.springframework.http.ResponseEntity;
import eu.eudat.logic.utilities.builders.XmlBuilder;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Node;
import org.w3c.dom.NodeList;
import javax.xml.xpath.*;
import java.io.File;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.stream.Collectors;
public class DMPToDepositMapper {
public static DMPDepositModel fromDMP(DMP entity, File pdfFile, String fileName, ResponseEntity<byte[]> jsonFile, File supportingFilesZip, String previousDOI) {
private static final Logger logger = LoggerFactory.getLogger(DMPToDepositMapper.class);
private static final ObjectMapper mapper = new ObjectMapper();
public static DMPDepositModel fromDMP(DMP entity, FileEnvelope pdfFile, FileEnvelope jsonFile, File supportingFilesZip, String previousDOI) {
DMPDepositModel deposit = new DMPDepositModel();
deposit.setId(entity.getId());
deposit.setVersion(entity.getVersion());
deposit.setLabel(entity.getLabel());
deposit.setDescription(entity.getDescription());
deposit.setPublic(entity.isPublic());
deposit.setDatasets(entity.getDataset().stream().map(DMPToDepositMapper::fromDataset).collect(Collectors.toList()));
deposit.setUsers(entity.getUsers().stream().map(DMPToDepositMapper::fromUserDMP).collect(Collectors.toSet()));
deposit.setOrganisations(entity.getOrganisations().stream().map(DMPToDepositMapper::fromOrganisation).collect(Collectors.toSet()));
deposit.setResearchers(entity.getResearchers().stream().map(DMPToDepositMapper::fromResearcher).collect(Collectors.toSet()));
deposit.setGrant(fromGrant(entity.getGrant()));
deposit.setPdfFile(pdfFile);
deposit.setPdfFileName(fileName);
deposit.setRdaJson(jsonFile);
deposit.setRdaJsonFile(jsonFile);
deposit.setSupportingFilesZip(supportingFilesZip);
deposit.setPreviousDOI(previousDOI);
@ -31,6 +47,54 @@ public class DMPToDepositMapper {
return deposit;
}
private static DatasetDepositModel fromDataset(Dataset entity){
DatasetDepositModel deposit = new DatasetDepositModel();
deposit.setLabel(entity.getLabel());
deposit.setDescription(entity.getDescription());
deposit.setProfileDefinition(entity.getProfile().getDefinition());
deposit.setProperties(entity.getProperties());
deposit.setFields(fromDefinitionAndProperties(deposit.getProfileDefinition(), deposit.getProperties()));
return deposit;
}
private static List<DatasetFieldsDepositModel> fromDefinitionAndProperties(String definition, String properties){
List<DatasetFieldsDepositModel> deposit = new ArrayList<>();
try {
Map<String, Object> datasetAnswers = mapper.readValue(properties, HashMap.class);
Document document = XmlBuilder.fromXml(definition);
XPathFactory xpathFactory = XPathFactory.newInstance();
XPath xpath = xpathFactory.newXPath();
XPathExpression expr = xpath.compile("//schematics");
NodeList schematics = (NodeList) expr.evaluate(document, XPathConstants.NODESET);
for (int i = 0; i < schematics.getLength(); i++) {
Node schematicsNode = schematics.item(i);
NodeList schematicsList = schematicsNode.getChildNodes();
DatasetFieldsDepositModel fieldDeposit = new DatasetFieldsDepositModel();
List<String> schematicsDeposit = new ArrayList<>();
if(schematicsList != null){
for(int j = 0; j < schematicsList.getLength(); j++){
Node schematic = schematicsList.item(j);
if(schematic.getTextContent().matches(".*\\w+.*")) {
schematicsDeposit.add(schematic.getTextContent());
}
}
}
fieldDeposit.setSchematics(schematicsDeposit);
String fieldId = schematicsNode.getParentNode().getAttributes().getNamedItem("id").getNodeValue();
String value = (String) datasetAnswers.get(fieldId);
fieldDeposit.setValue(value);
deposit.add(fieldDeposit);
}
}
catch (XPathExpressionException | JsonProcessingException ex){
logger.error(ex.getMessage(), ex);
return null;
}
return deposit;
}
private static UserDMPDepositModel fromUserDMP(UserDMP entity){
UserDMPDepositModel deposit = new UserDMPDepositModel();
deposit.setUser(fromUserInfo(entity.getUser()));