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3805 Commits

Author SHA1 Message Date
Antonis Lempesis ab18c9daa9 Merge branch 'beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into beta 2022-06-09 15:48:21 +03:00
Antonis Lempesis 574492c659 removed double result_apc table creation from monitor 2022-06-09 15:48:13 +03:00
Michele Artini b94a791bc5 unit tests to transform cnr explora 2022-06-09 12:25:34 +02:00
Miriam Baglioni 4b6913787b [DOI-BOOST] added one method in test of crossref mapping to aof and one resource. Related to ticket 7807 2022-06-08 14:55:19 +02:00
Antonis Lempesis db088cc69c fixed *_organization tables 2022-06-07 04:04:28 +03:00
Miriam Baglioni 31d4557e8d Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2022-06-06 11:52:29 +02:00
Claudio Atzori 5c2949a864 Merge pull request '[stats wf] added open citations & more orgs in monitor, removed collab indicator' (#213) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #213
 2022-05-20 11:38:43 +02:00
Miriam Baglioni 5e0b8f9b5f [CountryPropagation] refactoring 2022-05-20 09:15:53 +02:00
Miriam Baglioni c298c148cb [CountryPropagation] fix NPE issue 2022-05-20 09:11:46 +02:00
Miriam Baglioni eaf9385ae5 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-05-17 15:09:37 +02:00
Miriam Baglioni f5207885e3 [EOSCTag] changed code to remove EOSC Jupyter Notebook and modified test to exclude galaxy + software from the tagging for Galaxy 2022-05-17 15:09:22 +02:00
Claudio Atzori d098ad0d93 [hb patch] updated map 2022-05-16 15:54:04 +02:00
Claudio Atzori 1dda11e031 [hb patch] updated map 2022-05-16 15:53:27 +02:00
Claudio Atzori 8dd5517548 code formatting 2022-05-16 14:35:24 +02:00
Claudio Atzori 52cb086506 [graph grouping] drop relation target path before copying from source 2022-05-16 12:08:36 +02:00
Claudio Atzori 6442763f97 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-05-16 12:07:45 +02:00
Claudio Atzori 997c50078e [graph grouping] drop relation target path before copying from source 2022-05-16 12:07:40 +02:00
Sandro La Bruzzo c1971d52c4 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-05-16 10:30:35 +02:00
Sandro La Bruzzo 4c50f35c8b update publication Date format 2022-05-16 10:29:36 +02:00
Michele Artini 46c07e0724 deleted hierarchical rels from ror action set 2022-05-16 09:39:54 +02:00
Claudio Atzori 6031acb2e3 [openorgs] fixed parent/child query, using the correct semantic labels 2022-05-16 09:20:48 +02:00
Claudio Atzori 0dc33ea391 [openorgs] fixed parent/child query, using the correct semantic labels 2022-05-16 09:20:30 +02:00
Antonis Lempesis 3fc9efeab6 fixed typo, addded open citations and apcs in monitor 2022-05-13 14:28:13 +03:00
Miriam Baglioni e4eac1d20b [EOSC TAG] added code to remove EOSC Jupyter Notebook from subjects and put EOSC as classid in the qualifier 2022-05-13 11:01:33 +02:00
Sandro La Bruzzo 22f65680b9 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-05-11 15:30:12 +02:00
Sandro La Bruzzo ca8d26bcb4 added better filter for openCitations 2022-05-11 15:29:57 +02:00
Claudio Atzori 5d3b4a9c25 [graph merge beta] merge datasource originalid, collectedfrom, and pid lists 2022-05-11 14:13:06 +02:00
Antonis Lempesis 23334479bb removed yet another collab, added more orgs in monitor 2022-05-11 13:05:52 +03:00
Claudio Atzori 2a8e0fb72f [openorgs] mapping parent/child relations without massaging the semantic labels 2022-05-10 08:45:53 +02:00
Claudio Atzori 77bc9863e9 [openorgs] mapping parent/child relations without massaging the semantic labels 2022-05-09 16:06:04 +02:00
Claudio Atzori 378020e30a [eosc_services] unit test adaptation 2022-05-09 16:05:06 +02:00
Miriam Baglioni 89657a0b78 [UsageCount] refactoring 2022-05-09 14:43:27 +02:00
Miriam Baglioni a056f59c6e [UsageCount] make it as an action set as it should be, plus changed the test to make them work as well now 2022-05-09 12:51:35 +02:00
Antonis Lempesis 61b4c19e65 restored indi_result_org_country_collab, removed indi_result_org_collab 2022-05-06 12:52:10 +03:00
Antonis Lempesis cfbbcaf7c4 commented out indi_result_org_country_collab 2022-05-06 12:49:36 +03:00
Claudio Atzori 658450d9a3 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-05-05 11:38:08 +02:00
Claudio Atzori 846975c886 [eosc_services] using the correct 'keyword' subject type, as declared in the dnet:subject_classification_typologies vocabulary 2022-05-05 11:37:58 +02:00
Miriam Baglioni 8a72de4011 [EOSCTag] modified workflow to execute all the steps and not only the last one 2022-05-04 10:10:56 +02:00
Miriam Baglioni bd1108f98b mergin with branch beta 2022-05-04 10:06:56 +02:00
Miriam Baglioni 3aeedd931a [EOSCTag] fixed issue in case description is null. Modified test resources and classes 2022-05-04 10:06:38 +02:00
Claudio Atzori da611cfbbd [eosc_services] resolved merge conflicts 2022-05-03 13:37:15 +02:00
Claudio Atzori 9e12cb3c92 EOSC Services - removed field knowledgegraph; depending on the released schema module 2022-05-03 11:55:45 +02:00
Miriam Baglioni a21fe310e5 [EOSCTag] last test and change in the implementation to search in title and descriptio 2022-05-02 17:43:20 +02:00
Claudio Atzori 2ade69dea6 EOSC Services - minor 2022-05-02 17:03:31 +02:00
Claudio Atzori b6a7ff3a99 EOSC Services - removed fields from mapping, testing preparation 2022-05-02 15:52:33 +02:00
Miriam Baglioni e37177e1ce mergin with branch beta 2022-05-02 12:31:50 +02:00
Claudio Atzori a8c51f6f16 EOSC Services - fixed query and testing preparation 2022-05-02 11:09:03 +02:00
Claudio Atzori 05c1ea92e9 EOSC Services - added Service-specific fields in the XML record serialization 2022-04-29 15:56:55 +02:00
Claudio Atzori f5f532d134 EOSC Services - ongoing update 2022-04-29 12:25:24 +02:00
Antonis Lempesis 0353f93d54 added new hive opts 2022-04-29 12:49:27 +03:00
Serafeim Chatzopoulos 623f7be26d Fix reading files from HDFS in FileCollector & FileGZipCollector plugins 2022-04-28 16:31:11 +03:00
Claudio Atzori 5ffc24d1ba EOSC Services - ongoing update 2022-04-26 16:18:41 +02:00
Sandro La Bruzzo 78015a5733 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-04-26 09:56:34 +02:00
Sandro La Bruzzo 8c22e5c30a added fix to include date array with only year or year and month 2022-04-26 09:56:27 +02:00
Claudio Atzori 81c4496d32 Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-04-26 09:02:15 +02:00
Miriam Baglioni e342ec93f0 [EOSCTag] prepared resources for test 2022-04-22 18:35:37 +02:00
Miriam Baglioni 88562c0930 [EOSC TAG] added test for galaxy for title and description criterias 2022-04-22 18:35:03 +02:00
Miriam Baglioni dfbd2bcbea [EOSC TAG] added logic in case subject is null 2022-04-22 18:34:03 +02:00
Miriam Baglioni 27c85e901a [EOSCTag] added resources and finalized test for Jupyter Notebook tagging 2022-04-22 17:38:10 +02:00
Miriam Baglioni 87bff36d9e mergin with branch beta 2022-04-22 15:52:34 +02:00
Miriam Baglioni 911ce0780a Merge branch 'cleancontext' of https://code-repo.d4science.org/D-Net/dnet-hadoop into cleancontext 2022-04-22 15:41:42 +02:00
Miriam Baglioni 19d90658fc [Clean Context] added description to parameters 2022-04-22 15:41:23 +02:00
Claudio Atzori 54162f5c4f Merge branch 'beta' into cleancontext 2022-04-22 11:49:33 +02:00
Miriam Baglioni bbb77052d3 [EOSCTag] first test 2022-04-22 11:32:57 +02:00
Claudio Atzori 30105f0722 Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-04-22 11:22:21 +02:00
Sandro La Bruzzo a82ec3aaaf code formatter 2022-04-22 11:08:13 +02:00
Sandro La Bruzzo aa12429f50 Modified last intersection since we lost many titles. 2022-04-22 11:05:08 +02:00
Miriam Baglioni 7cb7066472 [EoscTag] first "rough" implementation 2022-04-22 10:44:17 +02:00
Sandro La Bruzzo d660895b30 fixed wrong mapping type of dataset 2022-04-21 20:41:13 +02:00
Miriam Baglioni e0915061c2 [Clean Context] fixed issue in param name 2022-04-21 16:32:40 +02:00
Miriam Baglioni 6dc68c48e0 [EOSCTag] - 2022-04-21 16:19:04 +02:00
Miriam Baglioni 9a961a0092 [Clean Context] fixed issue in param name 2022-04-21 15:12:24 +02:00
Claudio Atzori 29150a5d0c code formatting 2022-04-21 13:31:56 +02:00
Miriam Baglioni 5b7d9e741c [Clean Context] added logic to cleaning workflow to accomodate also context cleaning 2022-04-21 13:02:14 +02:00
Miriam Baglioni ccba1a3db1 [Clean Context] added logic to cleaning workflow to accomodate also context cleaning 2022-04-21 13:00:06 +02:00
Miriam Baglioni 20de75ca64 [Measures] removed typo 2022-04-21 12:14:03 +02:00
Miriam Baglioni bebb2a0560 Merge branch 'eosc_dimitris' of https://code-repo.d4science.org/D-Net/dnet-hadoop into eosc_dimitris 2022-04-21 12:10:19 +02:00
Miriam Baglioni b61efd613b [Measures] addressed comments in the PR 2022-04-21 12:09:37 +02:00
Miriam Baglioni d012d125d7 [EOSCTag] - 2022-04-21 12:02:09 +02:00
Claudio Atzori 88acad76f9 Merge branch 'beta' into eosc_dimitris 2022-04-21 12:00:03 +02:00
Claudio Atzori eabb40fccc Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-04-21 11:42:43 +02:00
Miriam Baglioni c304657d91 [Measures] put the logic in common, no need to change the schema 2022-04-21 11:27:26 +02:00
Sandro La Bruzzo d580e15442 Modified last intersection since we lost many titles. 
this is my last resource, after that, I've to  change my job
 2022-04-21 11:06:08 +02:00
Miriam Baglioni 5295effc96 [Measures] fixed issue 2022-04-20 16:20:40 +02:00
Miriam Baglioni a38f0f5ea7 mergin with branch beta 2022-04-20 15:44:18 +02:00
Miriam Baglioni dbfbe8841a [Clean Context] changed the description in input parameters 2022-04-20 15:41:03 +02:00
Miriam Baglioni 5feae77937 [Measures] last changes to accomodate tests 2022-04-20 15:13:09 +02:00
Miriam Baglioni 869407c6e2 [Measures] added new measure (usagecounts) as action set. Measure added at the level of the result. Ref #7587 2022-04-20 14:02:05 +02:00
Antonis Lempesis b7cd2c6ca1 added open citations 2022-04-20 14:46:55 +03:00
Michele Artini c96a8613f8 update SQL queries 2022-04-20 12:07:49 +02:00
Michele Artini 4314db55c8 migration to services: update sql queries 2022-04-19 15:05:02 +02:00
Miriam Baglioni 0012e57bf9 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2022-04-14 14:14:44 +02:00
Miriam Baglioni c5a863132c [BulkTagging] revert it 2022-04-14 14:14:13 +02:00
Sandro La Bruzzo d5b29d96a7 fix merging in crossrefAggregator which creates dataInfo null 2022-04-14 11:07:04 +02:00
Miriam Baglioni 8e8933d41a [BulkTagging] added fix if result.dataInfo is null 2022-04-14 09:04:24 +02:00
Claudio Atzori b93a141d6c [Doiboost] fixed fundingReference extraction from the Crossref records 2022-04-12 10:26:05 +02:00
Claudio Atzori 73c172926a [Doiboost] fixed fundingReference extraction from the Crossref records 2022-04-12 10:25:42 +02:00
Claudio Atzori 48b580b45c [graph enrichment] fixed country_propagation oozie workflow definition, parameter saveGraph is not needed anymore by the SparkCountryPropagationJob 2022-04-11 08:52:36 +02:00
Claudio Atzori 21f32b83c6 [graph enrichment] fixed country_propagation oozie workflow definition, parameter saveGraph is not needed anymore by the SparkCountryPropagationJob 2022-04-11 08:52:12 +02:00
Claudio Atzori 4eff7856f5 Merge pull request '[stats-wf] computing stats in each step' (#210) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #210
 2022-04-08 14:21:01 +02:00
Serafeim Chatzopoulos d0b84d3297 Add FileCollectorPlugin and respective test 2022-04-07 15:06:38 +03:00
Serafeim Chatzopoulos bc1bf55507 Add AbstractSplittedRecordPlugin 2022-04-07 14:33:04 +03:00
Claudio Atzori c26222623f [maven-release-plugin] prepare for next development iteration 2022-04-07 13:32:22 +02:00
Claudio Atzori 86585a6b27 [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 13:32:19 +02:00
Claudio Atzori ad85d88eaf [maven-release-plugin] rollback the release of dhp-1.2.4 2022-04-07 13:28:35 +02:00
Claudio Atzori 598e11dfd7 [maven-release-plugin] prepare for next development iteration 2022-04-07 13:27:02 +02:00
Claudio Atzori db3d9877a5 [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 13:26:58 +02:00
Claudio Atzori 3bba6d6e38 [maven-release-plugin] rollback the release of dhp-1.2.4 2022-04-07 12:23:17 +02:00
Claudio Atzori 2ac2d928bd [maven-release-plugin] prepare for next development iteration 2022-04-07 12:18:47 +02:00
Claudio Atzori 85bc722ff4 [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 12:18:43 +02:00
Claudio Atzori bc05b6168a [maven-release-plugin] rollback the release of dhp-1.2.4 2022-04-07 11:49:06 +02:00
Claudio Atzori 505420fd61 [maven-release-plugin] prepare for next development iteration 2022-04-07 11:34:06 +02:00
Claudio Atzori 66e718981e [maven-release-plugin] prepare release dhp-1.2.4 2022-04-07 11:34:02 +02:00
Serafeim Chatzopoulos e612489670 Add fileGZip collector plugin and respective test 2022-04-06 19:12:44 +03:00
Claudio Atzori 4190c9f6bc [graph raw] avoid NPEs importing datasource consent fields 2022-04-06 15:34:31 +02:00
Claudio Atzori 05fafa1408 [graph raw] avoid NPEs importing datasource consent fields 2022-04-06 15:23:50 +02:00
Antonis Lempesis c442c91f89 computing stats in each step 2022-04-06 12:40:02 +03:00
Claudio Atzori 8c457f1b2c conflicts resolved, merged from beta 2022-04-06 10:27:52 +02:00
Miriam Baglioni e77d104951 [OC] added / to workflow path 2022-04-05 15:07:11 +02:00
Miriam Baglioni 79336d46c5 [Clean Context] first naive implementation of a functionality to clean not wanted contextes from one result. This implementation simply verifies the main title of the results start with a given string 2022-04-04 15:52:31 +02:00
Claudio Atzori 873369af1c Merge pull request '[stats wf] added apcs in monitor db' (#207) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #207
 2022-03-29 15:40:20 +02:00
Antonis Lempesis 7112806a73 views cannot be stored as parquet... 2022-03-29 16:37:29 +03:00
Antonis Lempesis fff0b3cc19 added apcs in monitor db 2022-03-29 14:15:31 +03:00
Claudio Atzori de85367695 Merge pull request '[stats wf] fix: views cannot be stored as parquet...' (#206) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #206
 2022-03-29 12:51:02 +02:00
Antonis Lempesis ee24f3eb2c views cannot be stored as parquet... 2022-03-29 13:47:48 +03:00
Sandro La Bruzzo 1b11010169 minor fix 2022-03-29 10:59:14 +02:00
Claudio Atzori 0a0ae84c22 [graph raw] DOI based instance URLs on https 2022-03-29 10:52:58 +02:00
Claudio Atzori 9fa3dd78fe Merge pull request '[stats wf] various fixes, organization ids for inst. dashboard' (#205) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #205
 2022-03-28 22:03:49 +02:00
Claudio Atzori 96aa2a5d0d Merge branch 'beta' into instance_group_by_url 2022-03-28 09:23:52 +02:00
Claudio Atzori 741bc99c47 Merge branch 'beta' into datasource_pdf_consent 2022-03-28 09:20:48 +02:00
Claudio Atzori 61319b2e83 updated dhp-schema version; set entity-level dataInfo before & after merging the fields from the group of duplicates 2022-03-25 16:38:33 +01:00
Antonis Lempesis d8503cd191 added moooar organizations 2022-03-24 14:02:36 +02:00
Miriam Baglioni 7b8f85692e [Enrichment country] fixed issues with parameters and workflow args 2022-03-23 17:20:23 +01:00
Claudio Atzori 48d32466e4 instances grouped by URL expose only one refereed 2022-03-23 14:52:03 +01:00
Claudio Atzori f10066547b increased spark.sql.shuffle.partitions in affiliation_from_semrel_propagation 2022-03-23 12:22:26 +01:00
Claudio Atzori 43733c1a18 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-03-23 12:14:27 +01:00
Antonis Lempesis 62f91b0869 cleanup 2022-03-22 16:17:49 +02:00
Antonis Lempesis 2e8394ecf8 creating aaall tables as parquet 2022-03-22 16:16:08 +02:00
Antonis Lempesis dcfbeb8142 yet more typos 2022-03-21 12:36:03 +02:00
Miriam Baglioni 89fd275480 [HostedByMap] added left over from PR and fixed issue on workflow 2022-03-21 09:54:45 +01:00
miconis c763aded70 dependency updated to the new pace-core version 2022-03-16 16:41:50 +01:00
miconis c959639bd5 dependency updated to the new pace-core version 2022-03-15 16:33:03 +01:00
Miriam Baglioni 0f7d8ca2e0 [HostedByMap] change on master to align to PR 201 on beta merged as 9f3036c847 2022-03-11 15:16:02 +01:00
Claudio Atzori f430029596 cleanup 2022-03-11 14:28:28 +01:00
Miriam Baglioni 12de9acb0d [Country Propagation] left out from previous commit 2022-03-11 14:17:02 +01:00
Miriam Baglioni 2fbb35ade5 mergin with branch beta 2022-03-11 13:58:10 +01:00
Miriam Baglioni 4437f9345d [Country Propagation] left out from previous commit 2022-03-11 13:57:47 +01:00
Miriam Baglioni 2b643059fa [Country Propagation] changed the logic to get the collectedfrom at the result level. To fix issue when no instance is created for a result that should have the country associated. Change the code to use spark instead of hive to prepare the data needed for the propagation step. Added new tests for the intermediate steps and new verification for the propagation itself 2022-03-11 13:56:48 +01:00
Claudio Atzori f25407bbe2 added mapping for datasource consent fields to integrate them in the graph 2022-03-11 09:32:42 +01:00
Miriam Baglioni 2c5087d55a [HostedByMap] download of doaj from json, modification of test resources, deletion of class no more needed for the CSV download 2022-03-04 15:18:21 +01:00
Miriam Baglioni 5d608d6291 [HostedByMap] changed the model to include also oaStart date and review process that could be possibly used in the future 2022-03-04 11:06:09 +01:00
Miriam Baglioni b7c2340952 [HostedByMap - DOIBoost] changed to use code moved to common since used also from hostedbymap now 2022-03-04 11:05:23 +01:00
Miriam Baglioni 8a41f63348 [HostedByMap] update to download the json instead of the csv 2022-03-04 10:38:43 +01:00
Miriam Baglioni 44b0c03080 [HostedByMap] update to download the json instead of the csv 2022-03-04 10:37:59 +01:00
Antonis Lempesis ad78e505da yet another fix 2022-03-03 12:28:12 +02:00
Miriam Baglioni 3be8737c32 [graph-stats] fixed query after the change in the indicator table related to PR#200 2022-03-02 14:09:05 +01:00
Miriam Baglioni 3970651ee1 Merge pull request 'fixed query after the change in the indicator table' (#200) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #200
 2022-03-02 14:05:58 +01:00
Antonis Lempesis efeeebfee1 fixed query after the change in the indicator table 2022-03-02 13:29:25 +02:00
Claudio Atzori 580d904aae manually merging PR#199 #199 2022-02-25 12:22:50 +01:00
Claudio Atzori 1932a65d1c Merge pull request '[Stats wf] sprint 6 indicators' (#198) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #198
 2022-02-25 12:09:18 +01:00
Miriam Baglioni f5b0a6f89c [master to beta] fixed issues in test files 2022-02-25 10:21:57 +01:00
miconis 8991d097b4 bug fix in the DedupRecordFactory, DataInfo set before merge 2022-02-24 17:13:12 +01:00
miconis fe1c966cbf Merge branch 'master_202203' of code-repo.d4science.org:D-Net/dnet-hadoop into master_202203 2022-02-24 17:08:38 +01:00
miconis b0f369dc78 bug fix in the DedupRecordFactory, DataInfo set before merge 2022-02-24 17:08:24 +01:00
Miriam Baglioni 859cb7ac9d [DoiBoost AR] changed test resource to be sure the result will always have EMBARGO as value for AccessRight 2022-02-24 16:55:32 +01:00
Miriam Baglioni a40b59b7d5 [ResultToOrgFromInstRepoTest] fixed issue in model of the input resources 2022-02-24 16:05:57 +01:00
Claudio Atzori 66c09b1bc7 code formatting 2022-02-24 12:58:07 +01:00
Claudio Atzori a87c070447 conflicts resolved, merged from beta 2022-02-24 12:51:31 +01:00
Claudio Atzori 86cdb7a38f [provision] serialize measures defined on the result level 2022-02-23 15:54:18 +01:00
Alessia Bardi 9d6203f79b test mapping datasource 2022-02-23 15:00:53 +01:00
Antonis Lempesis 3b92a2ab9c added the rest of spring 6 in monitor db 2022-02-23 12:05:57 +02:00
Antonis Lempesis 87c91f70a2 added sprint 6 indicators to monitor db 2022-02-22 14:41:48 +02:00
Claudio Atzori 5226d0a100 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-02-18 15:21:07 +01:00
Claudio Atzori 99f5b14469 [graph raw] invisible records stored among the raw graph rather than the claimed subgraph 2022-02-18 15:20:57 +01:00
Claudio Atzori 401dd38074 code formatting 2022-02-18 15:19:15 +01:00
Claudio Atzori cf8443780e added processingchargeamount to the result view 2022-02-18 15:17:48 +01:00
Sandro La Bruzzo 891781ee3f Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-02-18 11:11:32 +01:00
Sandro La Bruzzo d3f03abd51 fixed wrong json path 2022-02-18 11:11:17 +01:00
Claudio Atzori 89c7313fc5 Merge branch 'beta' into hierarchical_orgs_relations 2022-02-17 10:30:04 +01:00
dimitrispie 58c59f46eb Added Sprint 6 2022-02-17 10:21:09 +02:00
Antonis Lempesis 5772f92dba merged beta chnages in hive branch 2022-02-15 13:24:51 +02:00
Antonis Lempesis 393a4ee956 fixed yet another typo... 2022-02-15 12:56:50 +02:00
Sandro La Bruzzo 3aa2020b24 added script to regenerate hostedBy Map following instruction defined on ticket #7539 
updated hosted By Map
 2022-02-15 11:05:27 +01:00
Miriam Baglioni be64055cfe [OpenCitation] changed the name of destination folders 2022-02-14 15:49:44 +01:00
Miriam Baglioni 1490867cc7 [OpenCitation] cleaning of the COCI model 2022-02-14 14:52:12 +01:00
Miriam Baglioni c191080965 mergin with branch beta 2022-02-14 14:49:39 +01:00
Alessia Bardi 600ede1798 serialisation of APCs int he XML records 2022-02-11 11:00:20 +01:00
Miriam Baglioni 5c4043dba8 [OpenCitation] refactoring 2022-02-08 16:23:05 +01:00
Miriam Baglioni 759ed519f2 [OpenCitation] added logic to avoid the genration of self citations relations 2022-02-08 16:15:34 +01:00
Miriam Baglioni b071f8e415 [OpenCitation] change to extract in json format each folder just onece 2022-02-08 15:37:28 +01:00
Miriam Baglioni fbc28ee8c3 [OpenCitation] change the integration logic to consider dois with commas inside 2022-02-07 18:32:08 +01:00
Miriam Baglioni 78be2975f0 [stats-wf]fixed another typo related to PR#193 2022-02-07 11:22:08 +01:00
Miriam Baglioni 1f8302dc37 Merge pull request '[stats-wf]fixed yet another typo' (#193) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #193
 2022-02-07 11:19:26 +01:00
Antonis Lempesis 5f762cbd09 fixed yet another typo 2022-02-07 12:09:12 +02:00
Alessia Bardi ac8b8f224f Merge branch 'beta' into extendResult 2022-02-04 16:43:27 +01:00
Miriam Baglioni 493caef358 [stats-wf]fixed the result_result table related to PR#191 2022-02-04 14:51:25 +01:00
Miriam Baglioni 0547fd6ee7 Merge pull request '[stats-wf]fixed the result_result table' (#191) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #191
 2022-02-04 14:47:31 +01:00
Antonis Lempesis ae633c566b fixed the result_result table 2022-02-04 15:04:19 +02:00
Miriam Baglioni aae667e6b6 [APC at the result level] added the APC at the level of the result and modified test class 2022-02-04 12:34:25 +01:00
Sandro La Bruzzo bcfdf9a0d7 iis repository with https 2022-02-03 16:49:31 +01:00
Miriam Baglioni 3c60e53a96 [stats-wf]fixed the result_result creation for monitor PR#190 on beta 2022-02-03 14:47:08 +01:00
Miriam Baglioni 89922156c9 Merge pull request '[stats-wf]fixed the result_result creation for monitor' (#190) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #190
 2022-02-03 13:00:56 +01:00
Antonis Lempesis c2b44530a3 typo... 2022-02-03 13:44:07 +02:00
Antonis Lempesis dbd2646d59 fixed the result_result creation for monitor 2022-02-03 12:37:10 +02:00
Alessia Bardi 2e215abfa8 test for instances with URLs for OpenAPC 2022-02-02 17:27:44 +01:00
Miriam Baglioni 37784209c9 [dhp-schemas-] updated the version of dhp-schema to 2.10.27 for APC name and id modification 2022-02-02 12:46:31 +01:00
Miriam Baglioni 73eba34d42 [UnresolvedEntities] Changed the way to merge the unresolved because the new merge removed the dataInfo from the merged result. Added also data info for subjects 2022-02-01 08:38:41 +01:00
Miriam Baglioni dce7f5fea8 [BULK TAGGING] changed to fix issue that should have been fixed already 2022-01-31 08:20:28 +01:00
Claudio Atzori 8eb75ca169 adapted GenerateEntitiesApplicationTest behaviour 2022-01-27 16:24:37 +01:00
Claudio Atzori af61e44acc ported changes to the GraphCleaningFunctionsTest from 8de9788308 2022-01-27 16:19:14 +01:00
Claudio Atzori 1322379741 Merge branch 'beta' into delegated_authorities 2022-01-25 14:28:25 +01:00
Claudio Atzori 59a250337c [graph resolution] drop output path at the beginning 2022-01-24 18:02:39 +01:00
Claudio Atzori 97ad94d7d9 [graph resolution] drop output path at the beginning 2022-01-24 18:02:07 +01:00
Claudio Atzori 8de9788308 applied fix for avoiding ruling out the invisible (APC) records during the graph cleaning 2022-01-24 11:29:22 +01:00
Claudio Atzori 2f385b3ac6 updated dnet workflow profile definitions 2022-01-21 13:59:46 +01:00
Claudio Atzori dd52bf1bb8 copy relations to the graphOutputPath 2022-01-21 13:59:29 +01:00
Claudio Atzori 4983d6536d Merge branch 'beta' into delegated_authorities 2022-01-21 13:02:48 +01:00
Claudio Atzori f0ea2410e5 improved mapping titles from datacite records to consider title types 2022-01-21 10:50:34 +01:00
Claudio Atzori b37bc277c4 reintroduced the hostedby patching to the datacite records 2022-01-21 09:15:13 +01:00
Claudio Atzori f2fde5566b using helper method from ModelSupport to find the inverse relation descriptor 2022-01-20 09:19:07 +01:00
Claudio Atzori 3b9020c1b7 added unit test for the DispatchEntitiesJob 2022-01-19 18:15:55 +01:00
Claudio Atzori abfa9c6045 code formatting 2022-01-19 17:17:11 +01:00
Claudio Atzori 391aa1373b added unit test 2022-01-19 17:13:21 +01:00
Claudio Atzori 44a937f4ed factored out entity grouping implementation, extended to consider results from delegated authorities rather than identical records from other sources 2022-01-19 12:24:52 +01:00
Miriam Baglioni a7c4d0d16d [DoiBoost Organizations] added parameter to specify the action in the wf raw_organizations to be able to load the openorgs organization as in the loading step for the construction of the graph 2022-01-13 13:52:00 +01:00
Miriam Baglioni a75fb8c47a [BipFinderInstanceLevel] change pom to align to the dhp-schema release 2.10.24 and refactoring 2022-01-12 18:06:26 +01:00
Miriam Baglioni e7d5a39c03 [BipFinderInstanceLevel] added tests in test class 2022-01-12 17:25:04 +01:00
Miriam Baglioni 4993666d73 [BipFinderInstanceLevel] changed creation of the instance to allow to enrich existing instances with same pid 2022-01-12 16:53:47 +01:00
Claudio Atzori 9acc32faa6 [stats wf] final touches for the integration of PRs #166, #179 in the master branch 2022-01-12 12:04:31 +01:00
dimitrispie b053b0178e Sprint 5 and other changes 2022-01-12 11:23:37 +01:00
Antonis Lempesis b6b4bc0df9 added first indicator of sprint 5 2022-01-12 11:20:28 +01:00
Antonis Lempesis e91f06f39b fixed typos in indicators. Added extra views in monitor 2022-01-12 11:18:28 +01:00
Antonis Lempesis 3ce1976627 fixed column names 2022-01-12 11:14:41 +01:00
Antonis Lempesis 4878d7485c added usage stats 2022-01-12 11:13:25 +01:00
Antonis Lempesis a4316bafed fixed a typo 2022-01-12 11:12:53 +01:00
Antonis Lempesis bb17e070d8 added result_result relations 2022-01-12 11:09:38 +01:00
Claudio Atzori a30a98a716 Applying PR#166 in the master branch (Added sprint 3&4 of indicators). Merge commit '0df9574a6f5d9d75bc840decb023561ae941f9d6' 2022-01-12 10:57:19 +01:00
Sandro La Bruzzo 57e2c4b749 formatted code 2022-01-12 09:40:28 +01:00
Claudio Atzori 0f2144b5e0 scalafmt: code formatting 2022-01-11 17:03:44 +01:00
Claudio Atzori dcd282977c pulled from beta 2022-01-11 16:59:41 +01:00
Claudio Atzori 4f212652ca scalafmt: code formatting 2022-01-11 16:57:48 +01:00
Sandro La Bruzzo 0163dadb7f [doiboost] 
- update MAG schema, new filed added on version dec-2021
 2022-01-11 11:05:44 +01:00
Miriam Baglioni 904e1c2667 Merge pull request 'Affiliation Propagation through semantic relation' (#183) from enrichment into beta 
Reviewed-on: #183
 2022-01-07 19:18:16 +01:00
Miriam Baglioni 064f9bbd87 [AFFPropSR] added new paprameter for the number of iterations and new code for just one iteration 2022-01-07 18:58:51 +01:00
Miriam Baglioni b7e450070b [SDG-FOS] to import SDG file not considering the header 2022-01-07 12:13:26 +01:00
Miriam Baglioni 639190370a mergin with branch beta 2022-01-07 11:29:25 +01:00
Miriam Baglioni adccc2346a [SDG-FOS] to lower case for the doi 2022-01-07 11:28:50 +01:00
Claudio Atzori 8ae46ca789 OAF-store-graph mdstores: firther fix for PR#180 2022-01-05 15:52:15 +01:00
Claudio Atzori 908294d86e OAF-store-graph mdstores: firther fix for PR#180 2022-01-05 15:49:05 +01:00
Claudio Atzori 3bd3653be9 OAF-store-graph mdstores: save them in text format 2022-01-04 16:39:39 +01:00
Claudio Atzori 3dc48c7ab5 OAF-store-graph mdstores: save them in text format 2022-01-04 16:39:27 +01:00
Claudio Atzori f82db765db OAF-store-graph mdstores: save them in text format 2022-01-04 16:39:15 +01:00
Claudio Atzori 8d13effa31 test for the tolerant deserialisation utility method 2022-01-04 16:38:26 +01:00
Claudio Atzori 9458ee7938 serialise records in the OAF-store-graph mdstores in json format. Read them again in the graph construction phase using a tolerant parser to support backward compatible changes in the evolution of the schema 2022-01-04 16:38:09 +01:00
Claudio Atzori 58f8998e3d OAF-store-graph mdstores: save them in text format 2022-01-04 15:02:09 +01:00
Claudio Atzori 174c3037e1 OAF-store-graph mdstores: save them in text format 2022-01-04 14:40:16 +01:00
Claudio Atzori 045d767013 OAF-store-graph mdstores: save them in text format 2022-01-04 14:23:01 +01:00
Claudio Atzori bd59b58efb test for the tolerant deserialisation utility method 2022-01-04 11:26:56 +01:00
Claudio Atzori a6977197b3 serialise records in the OAF-store-graph mdstores in json format. Read them again in the graph construction phase using a tolerant parser to support backward compatible changes in the evolution of the schema 2022-01-03 17:25:26 +01:00
Miriam Baglioni 4c60ee1718 mergin with branch beta 2022-01-03 15:24:02 +01:00
Miriam Baglioni 92fd69e25d [SDG-FOS] alternative way to get input data to avoid OOM error while getting csv 2022-01-03 15:23:06 +01:00
Claudio Atzori fe7e5f4748 Merge pull request '[stats wf] result_result relations, usage stats, monitor views, indicator for sprint 5' (#179) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #179
 2022-01-03 14:52:11 +01:00
Claudio Atzori bcea4e3a9b added dnet workflow profile for the orchestration of the simplified and complete graph construction and processing pipeline, where the IIS works on the non-deduplicated graph 2022-01-03 14:33:00 +01:00
Miriam Baglioni a706ba0c08 Merge pull request 'SDG Integration' (#178) from SDG into beta 
Reviewed-on: #178
 2021-12-23 14:50:00 +01:00
Antonis Lempesis 81ee654271 added result_result relations 2021-12-23 15:46:17 +02:00
Antonis Lempesis 7551e52e95 fixed a typo 2021-12-23 15:33:53 +02:00
Miriam Baglioni 7a1b440413 [SDG] logic to create unresolved entities out of SDG input. This changes also some classes related to FOS to reuse the same code. The code under createunresolvedentities create results with the merged update of the the inputs provided (bip at the level of the isntance, fos and sdg for subjects) 2021-12-23 13:24:28 +01:00
Claudio Atzori cccb16900c https://support.openaire.eu/issues/7330 normalising DOI urls 2021-12-23 12:33:53 +01:00
Miriam Baglioni 2a67ee13ec [SDG] added model class 2021-12-23 10:37:52 +01:00
Miriam Baglioni 69e9ea9eeb [Graph Dump] Test for extraction of rels from entities extended 2021-12-23 10:15:30 +01:00
Miriam Baglioni 31b26d48ac [Graph Dump] fixed issue on extraction of relation between entities and contexts: the relationship name and type were swapped 2021-12-23 10:09:47 +01:00
Miriam Baglioni 10579c0dd0 [FOS]fixed doi value in test 2021-12-22 23:10:16 +01:00
Miriam Baglioni 6116fc5d40 [FOS]added logic to include only different subjects. Test refactoring and extention 2021-12-22 23:04:22 +01:00
Miriam Baglioni b81efb6a9d [FOS]changed the mapping between the csv and the model. Changed Test classes and resources 2021-12-22 21:40:35 +01:00
Miriam Baglioni de6c4c8968 [FOS]creation of the unresolved entities: remove the split for the doi: no more needed since each row is related to one doi 2021-12-22 16:44:44 +01:00
Miriam Baglioni 34ac56565d refactoring 2021-12-22 16:28:11 +01:00
Miriam Baglioni 20ef1d657f refactoring 2021-12-22 16:26:36 +01:00
Miriam Baglioni 813f856d3f [BipFinder] removing left over parameter in wf 2021-12-22 16:11:12 +01:00
Miriam Baglioni 2c126ed014 [BipFinder] create unresolved entities with measures at the level of the instance 2021-12-22 16:03:41 +01:00
Miriam Baglioni 0807fdb65a [BipFinder] remove not needed resources 2021-12-22 15:37:00 +01:00
Miriam Baglioni b5e11a3a0a [BipFinder] put in common package BipFinder model 2021-12-22 15:33:05 +01:00
Miriam Baglioni c5739c4266 [BipFinder] create action set for the measures at the level of the result 2021-12-22 15:08:33 +01:00
Miriam Baglioni da5f6260aa mergin with branch beta 2021-12-22 13:12:02 +01:00
Miriam Baglioni be0acccf42 Merge branch 'beta' into dump 2021-12-22 12:39:57 +01:00
Antonis Lempesis 16539d7360 added usage stats 2021-12-22 02:54:42 +02:00
Antonis Lempesis 3edd661608 fixed column names 2021-12-21 22:55:04 +02:00
Antonis Lempesis a4c0cbb98c fixed typos in indicators. Added extra views in monitor 2021-12-21 15:54:38 +02:00
Miriam Baglioni e24a7f3496 mergin with branch beta 2021-12-21 13:57:19 +01:00
Miriam Baglioni d1ae219cb4 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-21 13:55:53 +01:00
Miriam Baglioni 460e6b95d6 [Graph Dump] - 2021-12-21 13:48:03 +01:00
Sandro La Bruzzo 3920d68992 Fixed workflow generation of delta in datacite 2021-12-21 11:41:49 +01:00
Antonis Lempesis 58996972d9 added first indicator of sprint 5 2021-12-21 03:35:04 +02:00
dimitrispie c1cdec09a9 Sprint 5 and other changes 2021-12-20 19:23:57 +02:00
Miriam Baglioni 3cc1b7b153 mergin with branch beta 2021-12-15 17:25:02 +01:00
Miriam Baglioni 63b648b0dd Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-15 12:41:15 +01:00
Antonis Lempesis f0b523cfa7 removed the too restrctive clause. will discuss again 2021-12-15 12:32:15 +01:00
Sandro La Bruzzo b881ee5ef8 [scholexplorer] 
- implemented generation of scholix of delta update of datacite
 2021-12-15 11:25:32 +01:00
Sandro La Bruzzo 63952018c0 [scholexplorer] 
-moved SparkRetrieveDataciteDelta in scala folder
 2021-12-15 11:25:32 +01:00
Sandro La Bruzzo e5bff64f2e [scholexplorer] 
- Minor fix on SparkConvertRDDtoDataset
-first implementation of retrieve datacite dump
 2021-12-15 11:25:32 +01:00
Claudio Atzori 1790fa2d44 Merge branch 'beta' into affiliationPropagation 2021-12-14 15:26:56 +01:00
Miriam Baglioni 56409d1281 [Dump] resolved conflicts with beta and merging 2021-12-14 15:03:45 +01:00
Miriam Baglioni 22d4b5619b [BipFinder Result] last changes to test and resources files 2021-12-14 14:54:13 +01:00
Miriam Baglioni 6fb6236cd4 changed the way to produce the AS for bipFinder. 2021-12-14 14:51:14 +01:00
Miriam Baglioni 573bd17cbb Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-14 11:12:25 +01:00
Miriam Baglioni 4eb8276493 - 2021-12-14 11:12:17 +01:00
Antonis Lempesis ddd34087c2 removed 'stored as parquet' from views.. 2021-12-13 23:05:00 +02:00
Antonis Lempesis 915f758c82 moving data to impala cluster and creating shadow databases there 2021-12-13 16:26:14 +02:00
Miriam Baglioni 936578aaf1 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-13 15:01:47 +01:00
Miriam Baglioni 8d755cca80 - 2021-12-13 15:01:40 +01:00
Claudio Atzori 98eb292c59 avoid NPEs merging XMLInstance(s) 2021-12-13 13:27:20 +01:00
Claudio Atzori 5e17247bb6 avoid NPEs merging XMLInstance(s) 2021-12-13 11:48:40 +01:00
Claudio Atzori b70ecccea0 avoid NPEs merging XMLInstance(s) 2021-12-12 12:37:38 +01:00
Claudio Atzori c1b6ae47cd cleaning workflow assigns the proper default instance type when a value could not be cleaned using the vocabularies 2021-12-09 16:47:41 +01:00
Claudio Atzori eb43eda42a Merge branch 'beta' into graph_cleaning 2021-12-09 16:46:48 +01:00
Claudio Atzori 41c70c607d cleaning workflow assigns the proper default instance type when a value could not be cleaned using the vocabularies 2021-12-09 16:44:28 +01:00
Alessia Bardi cba63e9f82 Merge branch 'beta' into sygma_indexing 2021-12-09 15:52:16 +01:00
Alessia Bardi e53228401b style 2021-12-09 15:46:22 +01:00
Claudio Atzori cd9c51fd7a vocabulary based cleaning considers also the term label when looking up for a synonym 2021-12-09 14:49:24 +01:00
Claudio Atzori e6e177dda0 vocabulary based cleaning considers also the term label when looking up for a synonym 2021-12-09 13:57:53 +01:00
Alessia Bardi 6b5d7688a4 #7275 serialize license information in XML records 2021-12-09 13:46:48 +01:00
Miriam Baglioni b113586207 resolved conflicts 2021-12-07 10:16:14 +01:00
Sandro La Bruzzo 5d51b3dd4a Merge pull request 'scala_refactor' (#169) from scala_refactor into beta 
Reviewed-on: #169
 2021-12-06 15:33:44 +01:00
Miriam Baglioni d9836f0cf3 [OpenCitations] fixed test when executed one after the other 2021-12-06 15:27:09 +01:00
Miriam Baglioni d1df01ff1e [Graph Dump] fixed resource for test 2021-12-06 15:15:48 +01:00
Sandro La Bruzzo ed0c352799 [test-fixing] fixed wrong test 2021-12-06 15:07:41 +01:00
Miriam Baglioni 96a7d46278 [Graph Dump] fixed tests 2021-12-06 15:06:32 +01:00
Sandro La Bruzzo e9f285ec4d [scala-refactor] Module dhp-doiboost: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 14:24:03 +01:00
Sandro La Bruzzo bf880e2508 [scala-refactor] Module dhp-graph-mapper: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 13:57:41 +01:00
Sandro La Bruzzo 7af0bbd0b1 [scala-refactor] Module dhp-aggregation: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 11:26:36 +01:00
Claudio Atzori 08795cbd30 using helper method from ModelSupport to find the inverse relation descriptor 2021-12-06 10:39:56 +01:00
Miriam Baglioni f430688ff7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-03 12:36:08 +01:00
Miriam Baglioni 4bb1d43afc - 2021-12-03 12:35:51 +01:00
Sandro La Bruzzo f7011b90d8 format code 2021-12-03 11:15:09 +01:00
Claudio Atzori dd0b2e5244 Merge branch 'beta' into instance_group_by_url 2021-12-03 09:27:58 +01:00
Claudio Atzori 863a2f9db3 avoid to filter OAF records defined as invisible = true 2021-12-03 09:08:12 +01:00
Claudio Atzori 9cac283bec implemented Instance serialization features requested in https://support.openaire.eu/issues/7156 2021-12-02 17:20:33 +01:00
Miriam Baglioni d9f80488cc [GRAPH DUMP] Add one more test to check the filtering of the relations 2021-12-02 14:15:19 +01:00
Miriam Baglioni 58bc3f223a [GRAPH DUMP] Add filtering for relation we do not want to dump. It is based on the relclass 2021-12-02 14:09:46 +01:00
Miriam Baglioni 8905a39bf3 mergin with branch beta 2021-12-02 13:17:29 +01:00
Miriam Baglioni 87eedad898 - 2021-12-02 13:17:19 +01:00
Claudio Atzori 3b19821f3c added stats computation on the graph hive DB tables 2021-12-02 10:44:10 +01:00
Claudio Atzori cfa4560769 minor: fixed hive action name 2021-12-02 10:43:36 +01:00
Claudio Atzori d85af6fc25 [cleaning wf] fixed OAF record navigation, a mapping defined on a container object would have prevented the natvigation to continue on its properties 2021-12-01 15:49:15 +01:00
Claudio Atzori 4fe7888817 code formatting 2021-12-01 15:48:15 +01:00
Claudio Atzori 01e5e0142a added test to verify the relation inverse lookup operation 2021-12-01 09:46:26 +01:00
Antonis Lempesis d05210ba99 finished migration to hive only 2021-11-30 19:01:48 +02:00
Claudio Atzori 0df9574a6f Merge pull request '[stats wf] Added sprint 3&4 of indicators' (#166) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #166
 2021-11-29 10:40:26 +01:00
Claudio Atzori 1de881b796 resolved conflicts for #165 2021-11-26 16:15:11 +01:00
Claudio Atzori 014e872ae1 [resolution wf] added optional parameter to skip the entity resolution 2021-11-26 15:38:56 +01:00
Claudio Atzori 5c6d328537 code formatting 2021-11-26 15:38:16 +01:00
dimitrispie 09fc2afdca Added indi_funder_country_collab 
Kept only indi_pub_has_cc_licence
 2021-11-26 16:13:10 +02:00
Antonis Lempesis 0b4163ee0b added sprint3,4, removed 2, chaos 2021-11-26 15:58:01 +02:00
Antonis Lempesis 12749a0a77 first 2021-11-26 15:40:40 +02:00
dimitrispie 29f69f2f89 Sprint 4 2021-11-26 15:22:04 +02:00
Miriam Baglioni ac07ed8251 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-11-25 12:32:58 +01:00
Miriam Baglioni 5fd0e610bf [DOIBOOST Process] fix filtering to filter results with non null id 2021-11-25 12:10:45 +01:00
Sandro La Bruzzo feea154e89 remove working dir after test 2021-11-25 11:02:38 +01:00
Sandro La Bruzzo 028a8acad8 add test resources 2021-11-25 10:54:47 +01:00
Sandro La Bruzzo 2164a2a889 Datacite: Code Refactor generated a general SparkApplication Scala where all the spark scala have to inherit 
Commented a little the Datacite transformation code
 2021-11-25 10:54:13 +01:00
Miriam Baglioni 3f9b2ba8ce [Hosted By Map] fix issue in test 2021-11-22 16:59:43 +01:00
Sandro La Bruzzo a7cf277d98 Datacite: Removed HostedBy Patch as described on ticket #7219, Now all the records will have hosted by Unknown Repository 2021-11-22 16:03:17 +01:00
Sandro La Bruzzo 483d3039d1 entity resolution: added distcpt of missing entities in graph materialization 2021-11-22 15:55:24 +01:00
Sandro La Bruzzo 93fe8ce8b2 entity resolution: fix test 2021-11-22 15:50:43 +01:00
Sandro La Bruzzo 35e20b0647 updated resolution wf: 
- generate a new version of the graph
 - changed merge from union to join
 2021-11-22 11:48:55 +01:00
Miriam Baglioni fdb75b180e [Cleaning] added couple of tests for DOIBOOST publications 2021-11-21 16:35:22 +01:00
Miriam Baglioni 0506fa2654 [Graph Dump] changed to mirror the changes in the model 2021-11-19 15:56:25 +01:00
Sandro La Bruzzo 3426451d3f Merge remote-tracking branch 'origin/beta' into beta 2021-11-19 14:49:04 +01:00
Sandro La Bruzzo 4542a2338b updated site configuration to deploy on website 2021-11-19 13:44:08 +01:00
Claudio Atzori e5a2c596b2 Merge branch 'beta' into preserve_openorg_parent_child_relations 2021-11-19 11:35:46 +01:00
Claudio Atzori f4538f3c4c cleanup 2021-11-19 11:33:10 +01:00
Claudio Atzori 2b46b87f56 fixed filtering criteria applied in SparkCopyRelationsNoOpenorgs to keep the parent/child relations from OpenOrgs 2021-11-19 11:30:29 +01:00
Miriam Baglioni 9fae872181 [Graph Dump] changed to mirror the changes in the model 2021-11-19 11:25:50 +01:00
Sandro La Bruzzo fc03c99805 fixed javadocs url after deploying site 2021-11-19 10:46:33 +01:00
Sandro La Bruzzo 0c0d561bc4 added public class into tests to create correct javadoc 2021-11-19 09:54:22 +01:00
Claudio Atzori 62fa61f3cf merge from beta 2021-11-19 09:23:42 +01:00
Claudio Atzori bd9a43cefd Revert to 4094f2bb9a 2021-11-19 09:20:43 +01:00
Claudio Atzori 3a4d925386 Merge branch 'beta' into hierarchical_orgs_relations 2021-11-18 18:07:08 +01:00
Claudio Atzori 3974fa7dc1 Merge branch 'beta' into affiliationPropagation 2021-11-18 18:06:26 +01:00
Claudio Atzori a24b9f8268 [dedup] trivial refactoring 2021-11-18 17:12:02 +01:00
Claudio Atzori c0750fb17c avoid non necessary count operations over large spark datasets 2021-11-18 17:11:31 +01:00
Claudio Atzori bb5dca7979 cleanup 2021-11-18 17:10:46 +01:00
Miriam Baglioni 793b5a8e5f Aggiornare 'dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java' 
Removing the dump of Measure at the level of the result. We decided not to map it
 2021-11-18 14:49:38 +01:00
Miriam Baglioni 5dc5792722 [Graph Dump] Change test resource to mirror the movement of the measure element 2021-11-18 14:39:12 +01:00
Miriam Baglioni 0136a8c266 [Graph Dump] Change test to mirror that measure is at the level of the isntance 2021-11-18 14:38:33 +01:00
Miriam Baglioni 1b79c0ee79 mergin with branch beta 2021-11-18 11:01:00 +01:00
Antonis Lempesis cb3adb90f4 Merge branch 'beta' into beta 2021-11-17 14:33:45 +01:00
Antonis Lempesis c283406829 added Universidad Polytecnica de Madrid 2021-11-17 15:33:00 +02:00
Claudio Atzori e0395719d7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-11-17 14:17:27 +01:00
Claudio Atzori 82a4e4efae [cleaning wf] fixed methodology to rule out invalid result titles, based on https://support.openaire.eu/issues/7206 2021-11-17 14:17:22 +01:00
Miriam Baglioni 6d4a1c57ee [Resolve Entities] Change test dataset to mirror the modification in the creation of the map between the pids and the unresolved 2021-11-17 12:41:52 +01:00
Sandro La Bruzzo 9c82d670b8 make class public in order to create javadoc 2021-11-17 12:31:02 +01:00
Sandro La Bruzzo 1f5ee116ed code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala 
fixed test
 2021-11-17 12:23:52 +01:00
Sandro La Bruzzo 2fd9ceac13 code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala 2021-11-17 11:35:22 +01:00
Sandro La Bruzzo 2506d7a679 Merge branch 'mvn_site_documentation' of code-repo.d4science.org:D-Net/dnet-hadoop into mvn_site_documentation 2021-11-17 11:07:24 +01:00
Sandro La Bruzzo cded363b55 code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala 2021-11-17 11:06:35 +01:00
Miriam Baglioni 4094f2bb9a added integration md file 2021-11-17 10:04:52 +01:00
Miriam Baglioni ec8b0219ff [Documentation] Added first page for Integration via unresolved entities generation 2021-11-16 17:41:34 +01:00
Miriam Baglioni 2bbece2ca5 mergin with branch beta 2021-11-16 16:35:40 +01:00
Sandro La Bruzzo 2d67020c59 added dhp-enrichment maven site template 2021-11-16 16:01:08 +01:00
Miriam Baglioni 28ea532ece [Affilaition Propagation] moved the selection of graph relation as a preparation step 2021-11-16 15:24:19 +01:00
Sandro La Bruzzo 18c1d70ef4 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into mvn_site_documentation 2021-11-16 15:16:49 +01:00
Sandro La Bruzzo a1cafaf2e3 added mvn site for dnet-hadoop project 2021-11-16 15:16:28 +01:00
Miriam Baglioni 7c96e3fd46 removed not useful dir 2021-11-16 13:57:26 +01:00
Miriam Baglioni c7c0c3187b [AFFILIATION PROPAGATION] Applied some SonarLint suggestions 2021-11-16 13:56:32 +01:00
Miriam Baglioni c6a9f0a1a8 mergin with branch beta 2021-11-16 12:04:40 +01:00
Miriam Baglioni 99d86134f5 [Graph Dump] changed the dump since the measures have been moded at the level of the instance 2021-11-16 12:04:21 +01:00
Claudio Atzori 0a727d325d [dedup] increased number of partitions in the consistency phase 2021-11-16 08:43:41 +01:00
Claudio Atzori bafa2990f3 code formatting 2021-11-15 17:07:16 +01:00
Claudio Atzori 668ac25224 [graph resolution] using existing argument parser file name 2021-11-15 17:02:45 +01:00
Claudio Atzori 7d0a03f607 [graph resolution] minor 2021-11-15 14:45:54 +01:00
Claudio Atzori 941a50a2fc Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-11-15 14:42:49 +01:00
Claudio Atzori 7c804acda8 [graph resolution] minor 2021-11-15 14:42:43 +01:00
Sandro La Bruzzo efa09057db Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2021-11-15 14:32:09 +01:00
Sandro La Bruzzo 48923e46a1 added documentation to Pubmed Class and also added mvn site for dhp-aggregations 2021-11-15 14:32:01 +01:00
Claudio Atzori d2c787d416 [graph resolution] fixed sequence of the workflow steps 2021-11-15 14:31:15 +01:00
Claudio Atzori 975b10b711 [actionmanager] increased spark.sql.shuffle.partitions to 5000 2021-11-15 12:31:45 +01:00
Miriam Baglioni 4ec88c718c merge with beta - resolved conflict in pom 2021-11-15 10:52:16 +01:00
Miriam Baglioni 6f1a434e90 [Bypass Action Set] Fixed test to consider the new identifier utils 2021-11-15 09:59:23 +01:00
Miriam Baglioni 157d33ebf9 [Bypass Action Set] Refactoring 2021-11-15 09:58:48 +01:00
Miriam Baglioni 6595135a1a [Dump Schemas] changed the schema of the dumped result according to the modifications in the bestAccessRight type 2021-11-12 11:45:38 +01:00
Miriam Baglioni 43cae4ad88 Merge branch 'dump' of https://code-repo.d4science.org/D-Net/dnet-hadoop into dump 2021-11-12 11:36:54 +01:00
Miriam Baglioni b3f9370125 merge with beta - resolved conflict in pom 2021-11-12 11:25:26 +01:00
Miriam Baglioni 92d0e18b55 [Bypass Action Set] used constant DOI instead of "doi" 2021-11-12 10:56:58 +01:00
Miriam Baglioni 881113743f [Bypass Action Set] refactoring 2021-11-12 10:55:50 +01:00
Miriam Baglioni 47ccb53c4f [Bypass Action Set] modification for comment #157 (comment) 2021-11-12 10:54:09 +01:00
Miriam Baglioni ffb0ce1d59 merge with beta - resolved conflict in pom 2021-11-12 10:19:59 +01:00
Miriam Baglioni 716021546e [Bypass Action Set] minor fix 2021-11-12 10:18:01 +01:00
Sandro La Bruzzo 3469cc2b1d Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2021-11-12 09:56:52 +01:00
Sandro La Bruzzo a7763d2492 removed alternate identifier in resolutionMap 2021-11-12 09:56:45 +01:00
Miriam Baglioni b8bdabfae9 [Graph DUmp] removed OpenAccessRoute from test in best access right 2021-11-11 16:16:48 +01:00
Miriam Baglioni e5498052e8 [Graph DUmp] removed OpenAccessRoute from test in best access right 2021-11-11 16:14:10 +01:00
Miriam Baglioni 935062edec [Bypass Action Set] creation of unresolved entities 2021-11-11 16:11:25 +01:00
Antonis Lempesis 26f086dd64 removed the too restrctive clause. will discuss again 2021-11-11 12:57:19 +02:00
Claudio Atzori 148289150f Merge branch 'beta' into doiboost_url 2021-11-11 10:40:19 +01:00
Sandro La Bruzzo 2ca0a436ad added SparkResolveEntities node to the oozie wf 2021-11-11 10:25:42 +01:00
Sandro La Bruzzo 9cb195314f implemented and tested resolution of entities 2021-11-11 10:17:40 +01:00
Miriam Baglioni 6d3c4c4abe mergin with branch beta 2021-11-11 08:59:53 +01:00
Miriam Baglioni 8cc50ecee0 [Graph Dump] changed AccessRight with BestAccessRight in the dump and modified the dependency to the schema to the SNAPSHOT 2021-11-11 08:59:20 +01:00
Miriam Baglioni 88b73f4f49 mergin with branch beta 2021-11-10 17:00:52 +01:00
Miriam Baglioni c371b23077 - 2021-11-10 17:00:37 +01:00
Alessia Bardi fc8fceaac3 create direct link to WT projects as well 2021-11-10 14:11:52 +01:00
Alessia Bardi 6cd91004e3 fixed DOI for Wellcome Trust in mapping relationships from Crossref 2021-11-09 12:22:57 +01:00
Miriam Baglioni 9e214ce0eb [BypassAS] addition of OC relations 2021-11-09 12:07:19 +01:00
Alessia Bardi b9d4f115cc fixed Crossref mappign for SFI projects 2021-11-09 12:04:45 +01:00
Sandro La Bruzzo 6477a40670 implement filter of openCitation 2021-11-09 11:27:12 +01:00
Miriam Baglioni 6f7ca539c6 [BypassAS] update of results for bipFinder and FOS 2021-11-09 11:25:41 +01:00
Miriam Baglioni a7d50c499b [BypassAS] prepare FOS subject, test and model for FOS and BipFinder scores 2021-11-08 16:44:19 +01:00
Antonis Lempesis 91354c6068 - fetching all context related results 
- storing tables as parquet
 2021-11-08 15:15:46 +02:00
Miriam Baglioni 94918a673c [Graph DUMP] Fix issue for empty origilaId list 2021-11-08 10:25:28 +01:00
Claudio Atzori 9cb8e4ad21 Merge branch 'beta' into hierarchical_orgs_relations 2021-11-08 09:40:24 +01:00
Miriam Baglioni 4c70201412 mergin with branch beta 2021-11-05 12:29:56 +01:00
Miriam Baglioni 8442efd8d1 [Graph DUMP] Filtering out from the originalIds the id of the result in OpenAIRE 2021-11-05 12:29:22 +01:00
Claudio Atzori 5681e89544 Update 'dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/schemas/result_schema.json' 2021-11-05 12:18:24 +01:00
Miriam Baglioni a22c29fba1 [Graph DUMP] Filtering out from the originalIds the id of the result in OpenAIRE 2021-11-05 12:08:33 +01:00
Miriam Baglioni c10ff6928c [Graph DUMP] add schema of the dump related to the model as in dhp-schemas.2.8.31. Note the measere element at the level of the result has been removed because of issues on where to display it: at the level of the result or at the level of the entity 2021-11-05 11:36:21 +01:00
Miriam Baglioni 0857849a86 [Graph DUMP] Remove dump of measure until it will be clear where to put it (at the level of result or at the level of the instance) 2021-11-05 11:02:37 +01:00
Miriam Baglioni df7ee77c7a [DOIBoost Mapping] removed not needed comments 2021-11-04 16:24:07 +01:00
Miriam Baglioni de63d29b6f [DOIBoost Mapping] Fix to avoid to produce results with null as identifier (probably due to the filtering function in the factory for the creation of the id) 2021-11-04 16:16:40 +01:00
Miriam Baglioni d50057b2d9 [DOIBoost Mapping] changed the way to create the url for the instance: we use the crooref guidelines https://doi.org/doi 2021-11-03 16:59:37 +01:00
Miriam Baglioni edf55395e9 added test resourse 2021-11-03 16:49:30 +01:00
Miriam Baglioni d97ea82a29 [DOIBoost Mapping] Added test to verify the instance created for Crossref will have just the url related to the doi 2021-11-03 16:45:15 +01:00
Miriam Baglioni 96769b4481 [DOIBoost - Mapping] Changed the logic which brought in in the instance urls that should not be there: The urld of the doi in the json is reachable from the root (json/"URL") other urls where added from the links element. Now the mapping from the link element has been removed 2021-11-03 16:43:36 +01:00
Miriam Baglioni 683fe093cf [DOIBoost - Mapping] Remove the addition of the instance to the MAG publication record 2021-11-03 15:51:26 +01:00
Miriam Baglioni b2bb8d9d79 [DOIBoost - Mapping] selecting the url from Crossref containing the doi 2021-11-03 15:44:57 +01:00
Miriam Baglioni 779318961c [DOIBoost - Mapping] removed the url from crossref containing the api.elsevier.com... string in the url 2021-11-03 14:38:52 +01:00
Miriam Baglioni 2480e590d1 [DOIBoost - Mapping] changed the type on which to map dissertation from Crossref: from 006 Doctoral thesis to 0044 Thesis since dissertation could be either Doctoral or master thesis 2021-11-03 14:25:23 +01:00
Miriam Baglioni b9d124bb7c [Enrichment: Propagation through parent-child relationships] Added counters, and changed constraint to verify if filtering out the relation (from classname = harvested to classid != propagation) 2021-11-03 13:55:37 +01:00
Sandro La Bruzzo 7bd224f051 implement first version of scholexplorer integration for the generation of final graph 2021-11-02 15:58:15 +01:00
Antonis Lempesis b97b78f874 removed hardcoded reference 2021-11-02 09:12:49 +01:00
Claudio Atzori 7fa49f6956 Merge pull request 'removed hardcoded reference' (#154) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #154
 2021-11-02 09:11:30 +01:00
Antonis Lempesis f78afb5ef9 removed hardcoded reference 2021-11-01 15:42:29 +02:00
Miriam Baglioni 2aca6bfa0a mergin with branch beta 2021-10-29 11:20:45 +02:00
Miriam Baglioni 09f36cffb8 [Enrichment: Propagation through parent-child relationships] First implementation, testing, and wf for propagation of result to organization through semantic relation 2021-10-29 11:20:03 +02:00
Claudio Atzori 1225ba0b92 [resolution] increasing number of partitions to avoid OOM 2021-10-28 16:18:17 +02:00
Sandro La Bruzzo d9cbca83f7 moved filter on next phase 2021-10-28 16:13:24 +02:00
Claudio Atzori d02caef185 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-27 15:36:29 +02:00
Sandro La Bruzzo 1be9aa0a5f Removed filter of datacite items from the raw graph merging phase, Datacite is not an actionset anymore in beta 2021-10-26 17:52:20 +02:00
Sandro La Bruzzo 4acfa8fa2e Scholexplorer Datasource Aggregation: 
- Added collectedfrom in the inverse relation generated
Relation resolution:
- increased number of partitions in workflow.xml
- using classid instead of classname to build the pid-dnetId mapping
 2021-10-26 17:51:20 +02:00
Miriam Baglioni d0ef7d91c5 adding test resource 2021-10-26 17:34:11 +02:00
Sandro La Bruzzo 034304b33a conflict resolved on merge 2021-10-26 09:40:47 +02:00
Michele Artini d66e20e7ac added hierarchy rel in ROR actionset 2021-10-21 15:51:48 +02:00
Claudio Atzori d147295c2f avoiding java.io.NotSerializableException: java.util.HashMap 2021-10-21 14:15:57 +02:00
Claudio Atzori 3702fe478d cleanup 2021-10-21 12:05:02 +02:00
Sandro La Bruzzo ac36aa7d1c fixed wrong Encoding during a map phase 2021-10-21 11:35:02 +02:00
Sandro La Bruzzo aeeebd573b code refactor renamed datacite package 2021-10-20 17:37:42 +02:00
Sandro La Bruzzo ab3a99d3e9 removed old datacite oozie workflow 2021-10-20 17:19:47 +02:00
Sandro La Bruzzo ae4e99a471 Adapted workflow of resolution of PID to work into OpenAIRE data workflow 
- Added relations in both verse on all Scholexplorer datasources
 2021-10-20 17:12:16 +02:00
Claudio Atzori cece432adc [stats] reducing the step22 wait time 2021-10-20 14:16:33 +02:00
Antonis Lempesis a7376907c2 invalidating medatadata before context thingies 2021-10-20 14:16:25 +02:00
Antonis Lempesis 43f4eb492b fetching affiliated results for 4 orgs in monitor. fixed affiliated orgs in stats db 2021-10-20 14:16:11 +02:00
Claudio Atzori 4f8970f8ed [stats] reducing the step22 wait time 2021-10-20 14:14:53 +02:00
Claudio Atzori 00b78b9c58 cleanup: mapping contents in the graph already defined in the OAF graph model doesn't require to be aware of the vocabularies 2021-10-20 14:04:45 +02:00
Claudio Atzori c01dd0c925 registered oaf model classes for the KryoSerializer 2021-10-20 13:55:07 +02:00
Miriam Baglioni 652114c641 [affiliationPropagation] first try. preparetion 2021-10-20 11:44:23 +02:00
Claudio Atzori 59f76b50d4 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-20 09:42:35 +02:00
Antonis Lempesis 241dcf6df1 Merge branch 'beta' into beta 2021-10-19 23:54:21 +02:00
Claudio Atzori 515e068a78 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-19 16:46:06 +02:00
Claudio Atzori 512e7b0170 code formatting 2021-10-19 16:19:29 +02:00
Michele Artini c4fce785ab fixed a compilation problem of a unit test 2021-10-19 16:18:26 +02:00
Claudio Atzori e9157c67aa Merge branch 'beta' into dump 2021-10-19 16:15:03 +02:00