scalafmt: code formatting
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@ -438,8 +438,8 @@ case object Crossref2Oaf {
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funders.foreach(funder => {
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if (funder.DOI.isDefined && funder.DOI.get.nonEmpty) {
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funder.DOI.get match {
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case "10.13039/100010663" | "10.13039/100010661" |
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"10.13039/501100007601" | "10.13039/501100000780" | "10.13039/100010665" =>
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case "10.13039/100010663" | "10.13039/100010661" | "10.13039/501100007601" |
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"10.13039/501100000780" | "10.13039/100010665" =>
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generateSimpleRelationFromAward(funder, "corda__h2020", extractECAward)
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case "10.13039/100011199" | "10.13039/100004431" | "10.13039/501100004963" |
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"10.13039/501100000780" =>
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@ -8,44 +8,245 @@ import org.apache.spark.sql.{SaveMode, SparkSession}
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import org.slf4j.{Logger, LoggerFactory}
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object SparkImportMagIntoDataset {
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val datatypedict = Map(
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"bool" -> BooleanType,
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"int" -> IntegerType,
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"uint" -> IntegerType,
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"long" -> LongType,
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"ulong" -> LongType,
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"float" -> FloatType,
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"string" -> StringType,
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"bool" -> BooleanType,
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"int" -> IntegerType,
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"uint" -> IntegerType,
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"long" -> LongType,
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"ulong" -> LongType,
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"float" -> FloatType,
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"string" -> StringType,
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"DateTime" -> DateType
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)
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val stream = Map(
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"Affiliations" -> Tuple2("mag/Affiliations.txt", Seq("AffiliationId:long", "Rank:uint", "NormalizedName:string", "DisplayName:string", "GridId:string", "OfficialPage:string", "WikiPage:string", "PaperCount:long", "PaperFamilyCount:long", "CitationCount:long", "Iso3166Code:string", "Latitude:float?", "Longitude:float?", "CreatedDate:DateTime")),
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"AuthorExtendedAttributes" -> Tuple2("mag/AuthorExtendedAttributes.txt", Seq("AuthorId:long", "AttributeType:int", "AttributeValue:string")),
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"Authors" -> Tuple2("mag/Authors.txt", Seq("AuthorId:long", "Rank:uint", "NormalizedName:string", "DisplayName:string", "LastKnownAffiliationId:long?", "PaperCount:long", "PaperFamilyCount:long", "CitationCount:long", "CreatedDate:DateTime")),
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"ConferenceInstances" -> Tuple2("mag/ConferenceInstances.txt", Seq("ConferenceInstanceId:long", "NormalizedName:string", "DisplayName:string", "ConferenceSeriesId:long", "Location:string", "OfficialUrl:string", "StartDate:DateTime?", "EndDate:DateTime?", "AbstractRegistrationDate:DateTime?", "SubmissionDeadlineDate:DateTime?", "NotificationDueDate:DateTime?", "FinalVersionDueDate:DateTime?", "PaperCount:long", "PaperFamilyCount:long", "CitationCount:long", "Latitude:float?", "Longitude:float?", "CreatedDate:DateTime")),
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"ConferenceSeries" -> Tuple2("mag/ConferenceSeries.txt", Seq("ConferenceSeriesId:long", "Rank:uint", "NormalizedName:string", "DisplayName:string", "PaperCount:long", "PaperFamilyCount:long", "CitationCount:long", "CreatedDate:DateTime")),
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"EntityRelatedEntities" -> Tuple2("advanced/EntityRelatedEntities.txt", Seq("EntityId:long", "EntityType:string", "RelatedEntityId:long", "RelatedEntityType:string", "RelatedType:int", "Score:float")),
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"FieldOfStudyChildren" -> Tuple2("advanced/FieldOfStudyChildren.txt", Seq("FieldOfStudyId:long", "ChildFieldOfStudyId:long")),
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"FieldOfStudyExtendedAttributes" -> Tuple2("advanced/FieldOfStudyExtendedAttributes.txt", Seq("FieldOfStudyId:long", "AttributeType:int", "AttributeValue:string")),
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"FieldsOfStudy" -> Tuple2("advanced/FieldsOfStudy.txt", Seq("FieldOfStudyId:long", "Rank:uint", "NormalizedName:string", "DisplayName:string", "MainType:string", "Level:int", "PaperCount:long", "PaperFamilyCount:long", "CitationCount:long", "CreatedDate:DateTime")),
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"Journals" -> Tuple2("mag/Journals.txt", Seq("JournalId:long", "Rank:uint", "NormalizedName:string", "DisplayName:string", "Issn:string", "Publisher:string", "Webpage:string", "PaperCount:long", "PaperFamilyCount:long", "CitationCount:long", "CreatedDate:DateTime")),
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"PaperAbstractsInvertedIndex" -> Tuple2("nlp/PaperAbstractsInvertedIndex.txt.*", Seq("PaperId:long", "IndexedAbstract:string")),
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"PaperAuthorAffiliations" -> Tuple2("mag/PaperAuthorAffiliations.txt", Seq("PaperId:long", "AuthorId:long", "AffiliationId:long?", "AuthorSequenceNumber:uint", "OriginalAuthor:string", "OriginalAffiliation:string")),
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"PaperCitationContexts" -> Tuple2("nlp/PaperCitationContexts.txt", Seq("PaperId:long", "PaperReferenceId:long", "CitationContext:string")),
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"PaperExtendedAttributes" -> Tuple2("mag/PaperExtendedAttributes.txt", Seq("PaperId:long", "AttributeType:int", "AttributeValue:string")),
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"PaperFieldsOfStudy" -> Tuple2("advanced/PaperFieldsOfStudy.txt", Seq("PaperId:long", "FieldOfStudyId:long", "Score:float")),
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"PaperMeSH" -> Tuple2("advanced/PaperMeSH.txt", Seq("PaperId:long", "DescriptorUI:string", "DescriptorName:string", "QualifierUI:string", "QualifierName:string", "IsMajorTopic:bool")),
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"PaperRecommendations" -> Tuple2("advanced/PaperRecommendations.txt", Seq("PaperId:long", "RecommendedPaperId:long", "Score:float")),
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"PaperReferences" -> Tuple2("mag/PaperReferences.txt", Seq("PaperId:long", "PaperReferenceId:long")),
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"PaperResources" -> Tuple2("mag/PaperResources.txt", Seq("PaperId:long", "ResourceType:int", "ResourceUrl:string", "SourceUrl:string", "RelationshipType:int")),
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"PaperUrls" -> Tuple2("mag/PaperUrls.txt", Seq("PaperId:long", "SourceType:int?", "SourceUrl:string", "LanguageCode:string")),
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"Papers" -> Tuple2("mag/Papers.txt", Seq("PaperId:long", "Rank:uint", "Doi:string", "DocType:string", "PaperTitle:string", "OriginalTitle:string", "BookTitle:string", "Year:int?", "Date:DateTime?", "OnlineDate:DateTime?", "Publisher:string", "JournalId:long?", "ConferenceSeriesId:long?", "ConferenceInstanceId:long?", "Volume:string", "Issue:string", "FirstPage:string", "LastPage:string", "ReferenceCount:long", "CitationCount:long", "EstimatedCitation:long", "OriginalVenue:string", "FamilyId:long?", "FamilyRank:uint?", "DocSubTypes:string", "CreatedDate:DateTime")),
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"RelatedFieldOfStudy" -> Tuple2("advanced/RelatedFieldOfStudy.txt", Seq("FieldOfStudyId1:long", "Type1:string", "FieldOfStudyId2:long", "Type2:string", "Rank:float"))
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"Affiliations" -> Tuple2(
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"mag/Affiliations.txt",
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Seq(
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"AffiliationId:long",
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"Rank:uint",
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"NormalizedName:string",
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"DisplayName:string",
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"GridId:string",
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"OfficialPage:string",
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"WikiPage:string",
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"PaperCount:long",
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"PaperFamilyCount:long",
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"CitationCount:long",
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"Iso3166Code:string",
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"Latitude:float?",
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"Longitude:float?",
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"CreatedDate:DateTime"
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)
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),
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"AuthorExtendedAttributes" -> Tuple2(
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"mag/AuthorExtendedAttributes.txt",
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Seq("AuthorId:long", "AttributeType:int", "AttributeValue:string")
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),
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"Authors" -> Tuple2(
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"mag/Authors.txt",
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Seq(
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"AuthorId:long",
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"Rank:uint",
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"NormalizedName:string",
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"DisplayName:string",
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"LastKnownAffiliationId:long?",
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"PaperCount:long",
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"PaperFamilyCount:long",
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"CitationCount:long",
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"CreatedDate:DateTime"
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)
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),
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"ConferenceInstances" -> Tuple2(
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"mag/ConferenceInstances.txt",
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Seq(
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"ConferenceInstanceId:long",
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"NormalizedName:string",
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"DisplayName:string",
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"ConferenceSeriesId:long",
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"Location:string",
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"OfficialUrl:string",
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"StartDate:DateTime?",
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"EndDate:DateTime?",
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"AbstractRegistrationDate:DateTime?",
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"SubmissionDeadlineDate:DateTime?",
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"NotificationDueDate:DateTime?",
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"FinalVersionDueDate:DateTime?",
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"PaperCount:long",
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"PaperFamilyCount:long",
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"CitationCount:long",
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"Latitude:float?",
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"Longitude:float?",
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"CreatedDate:DateTime"
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)
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),
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"ConferenceSeries" -> Tuple2(
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"mag/ConferenceSeries.txt",
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Seq(
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"ConferenceSeriesId:long",
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"Rank:uint",
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"NormalizedName:string",
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"DisplayName:string",
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"PaperCount:long",
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"PaperFamilyCount:long",
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"CitationCount:long",
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"CreatedDate:DateTime"
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)
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),
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"EntityRelatedEntities" -> Tuple2(
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"advanced/EntityRelatedEntities.txt",
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Seq(
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"EntityId:long",
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"EntityType:string",
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"RelatedEntityId:long",
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"RelatedEntityType:string",
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"RelatedType:int",
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"Score:float"
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)
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),
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"FieldOfStudyChildren" -> Tuple2(
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"advanced/FieldOfStudyChildren.txt",
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Seq("FieldOfStudyId:long", "ChildFieldOfStudyId:long")
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),
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"FieldOfStudyExtendedAttributes" -> Tuple2(
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"advanced/FieldOfStudyExtendedAttributes.txt",
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Seq("FieldOfStudyId:long", "AttributeType:int", "AttributeValue:string")
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),
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"FieldsOfStudy" -> Tuple2(
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"advanced/FieldsOfStudy.txt",
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Seq(
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"FieldOfStudyId:long",
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"Rank:uint",
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"NormalizedName:string",
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"DisplayName:string",
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"MainType:string",
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"Level:int",
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"PaperCount:long",
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"PaperFamilyCount:long",
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"CitationCount:long",
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"CreatedDate:DateTime"
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)
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),
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"Journals" -> Tuple2(
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"mag/Journals.txt",
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Seq(
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"JournalId:long",
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"Rank:uint",
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"NormalizedName:string",
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"DisplayName:string",
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"Issn:string",
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"Publisher:string",
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"Webpage:string",
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"PaperCount:long",
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"PaperFamilyCount:long",
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"CitationCount:long",
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"CreatedDate:DateTime"
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)
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),
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"PaperAbstractsInvertedIndex" -> Tuple2(
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"nlp/PaperAbstractsInvertedIndex.txt.*",
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Seq("PaperId:long", "IndexedAbstract:string")
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),
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"PaperAuthorAffiliations" -> Tuple2(
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"mag/PaperAuthorAffiliations.txt",
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Seq(
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"PaperId:long",
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"AuthorId:long",
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"AffiliationId:long?",
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"AuthorSequenceNumber:uint",
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"OriginalAuthor:string",
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"OriginalAffiliation:string"
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)
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),
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"PaperCitationContexts" -> Tuple2(
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"nlp/PaperCitationContexts.txt",
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Seq("PaperId:long", "PaperReferenceId:long", "CitationContext:string")
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),
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"PaperExtendedAttributes" -> Tuple2(
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"mag/PaperExtendedAttributes.txt",
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Seq("PaperId:long", "AttributeType:int", "AttributeValue:string")
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),
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"PaperFieldsOfStudy" -> Tuple2(
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"advanced/PaperFieldsOfStudy.txt",
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Seq("PaperId:long", "FieldOfStudyId:long", "Score:float")
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),
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"PaperMeSH" -> Tuple2(
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"advanced/PaperMeSH.txt",
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Seq(
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"PaperId:long",
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"DescriptorUI:string",
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"DescriptorName:string",
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"QualifierUI:string",
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"QualifierName:string",
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"IsMajorTopic:bool"
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)
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),
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"PaperRecommendations" -> Tuple2(
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"advanced/PaperRecommendations.txt",
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Seq("PaperId:long", "RecommendedPaperId:long", "Score:float")
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),
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"PaperReferences" -> Tuple2(
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"mag/PaperReferences.txt",
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Seq("PaperId:long", "PaperReferenceId:long")
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),
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"PaperResources" -> Tuple2(
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"mag/PaperResources.txt",
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Seq(
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"PaperId:long",
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"ResourceType:int",
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"ResourceUrl:string",
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"SourceUrl:string",
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"RelationshipType:int"
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)
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),
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"PaperUrls" -> Tuple2(
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"mag/PaperUrls.txt",
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Seq("PaperId:long", "SourceType:int?", "SourceUrl:string", "LanguageCode:string")
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),
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"Papers" -> Tuple2(
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"mag/Papers.txt",
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Seq(
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"PaperId:long",
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"Rank:uint",
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"Doi:string",
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"DocType:string",
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"PaperTitle:string",
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"OriginalTitle:string",
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"BookTitle:string",
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"Year:int?",
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"Date:DateTime?",
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"OnlineDate:DateTime?",
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"Publisher:string",
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"JournalId:long?",
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"ConferenceSeriesId:long?",
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"ConferenceInstanceId:long?",
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"Volume:string",
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"Issue:string",
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"FirstPage:string",
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"LastPage:string",
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"ReferenceCount:long",
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"CitationCount:long",
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"EstimatedCitation:long",
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"OriginalVenue:string",
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"FamilyId:long?",
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"FamilyRank:uint?",
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"DocSubTypes:string",
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"CreatedDate:DateTime"
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)
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),
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"RelatedFieldOfStudy" -> Tuple2(
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"advanced/RelatedFieldOfStudy.txt",
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Seq(
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"FieldOfStudyId1:long",
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"Type1:string",
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"FieldOfStudyId2:long",
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"Type2:string",
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"Rank:float"
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)
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)
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)
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def getSchema(streamName: String): StructType = {
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var schema = new StructType()
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val d: Seq[String] = stream(streamName)._2
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@ -61,19 +262,22 @@ object SparkImportMagIntoDataset {
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schema
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}
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def main(args: Array[String]): Unit = {
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val logger: Logger = LoggerFactory.getLogger(getClass)
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val conf: SparkConf = new SparkConf()
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val parser = new ArgumentApplicationParser(IOUtils.toString(getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/mag/convert_mag_to_oaf_params.json")))
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val parser = new ArgumentApplicationParser(
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IOUtils.toString(
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getClass.getResourceAsStream("/eu/dnetlib/dhp/doiboost/mag/convert_mag_to_oaf_params.json")
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)
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)
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parser.parseArgument(args)
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val spark: SparkSession =
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SparkSession
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.builder()
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.config(conf)
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.appName(getClass.getSimpleName)
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.master(parser.get("master")).getOrCreate()
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.master(parser.get("master"))
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.getOrCreate()
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stream.foreach { case (k, v) =>
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val s: StructType = getSchema(k)
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