[Country Propagation] left out from previous commit
parent
2fbb35ade5
commit
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@ -1,111 +1,176 @@
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package eu.dnetlib.dhp.countrypropagation;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import org.apache.commons.io.FileUtils;
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import org.apache.spark.SparkConf;
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import org.apache.spark.api.java.JavaRDD;
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import org.apache.spark.api.java.JavaSparkContext;
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import org.apache.spark.sql.SparkSession;
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import org.junit.jupiter.api.AfterAll;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Test;
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import java.io.IOException;
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import java.nio.file.Files;
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import java.nio.file.Path;
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import com.fasterxml.jackson.databind.ObjectMapper;
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public class DatasourceCountryPreparationTest {
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(DatasourceCountryPreparationTest.class.getSimpleName());
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SparkConf conf = new SparkConf();
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conf.setAppName(DatasourceCountryPreparationTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(DatasourceCountryPreparationTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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void testPrepareDatasourceCountry() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/countrypropagation/graph")
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.getPath();
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PrepareDatasourceCountryAssociation
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.main(
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new String[] {
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"--isSparkSessionManaged", Boolean.FALSE.toString(),
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"--sourcePath", sourcePath,
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"--outputPath", workingDir.toString() + "/datasourceCountry",
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"--allowedtypes","pubsrepository::institutional" ,
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"--whitelist","10|openaire____::3795d6478e30e2c9f787d427ff160944;10|opendoar____::16e6a3326dd7d868cbc926602a61e4d0;10|eurocrisdris::fe4903425d9040f680d8610d9079ea14;10|openaire____::5b76240cc27a58c6f7ceef7d8c36660e;10|openaire____::172bbccecf8fca44ab6a6653e84cb92a;10|openaire____::149c6590f8a06b46314eed77bfca693f;10|eurocrisdris::a6026877c1a174d60f81fd71f62df1c1;10|openaire____::4692342f0992d91f9e705c26959f09e0;10|openaire____::8d529dbb05ec0284662b391789e8ae2a;10|openaire____::345c9d171ef3c5d706d08041d506428c;10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0;10|opendoar____::7a614fd06c325499f1680b9896beedeb;10|opendoar____::1ee3dfcd8a0645a25a35977997223d22;10|opendoar____::d296c101daa88a51f6ca8cfc1ac79b50;10|opendoar____::798ed7d4ee7138d49b8828958048130a;10|openaire____::c9d2209ecc4d45ba7b4ca7597acb88a2;10|eurocrisdris::c49e0fe4b9ba7b7fab717d1f0f0a674d;10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539;10|eurocrisdris::432ca599953ff50cd4eeffe22faf3e48"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<DatasourceCountry> tmp = sc
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.textFile(workingDir.toString() + "/datasourceCountry")
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.map(item -> OBJECT_MAPPER.readValue(item, DatasourceCountry.class));
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Assertions.assertEquals(3, tmp.count());
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Assertions.assertEquals(1, tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14")).count());
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Assertions.assertEquals(1, tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280")).count());
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Assertions.assertEquals(1, tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539")).count());
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Assertions.assertEquals("NL", tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14")).collect()
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.get(0).getCountry().getClassid());
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Assertions.assertEquals("Netherlands", tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14")).collect()
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.get(0).getCountry().getClassname());
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Assertions.assertEquals("IT", tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280")).collect()
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.get(0).getCountry().getClassid());
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Assertions.assertEquals("Italy", tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280")).collect()
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.get(0).getCountry().getClassname());
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Assertions.assertEquals("FR", tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539")).collect()
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.get(0).getCountry().getClassid());
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Assertions.assertEquals("France", tmp.filter(dsc -> dsc.getDataSourceId()
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.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539")).collect()
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.get(0).getCountry().getClassname());
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tmp.foreach(e -> System.out.println(OBJECT_MAPPER.writeValueAsString(e)));
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}
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private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
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private static SparkSession spark;
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private static Path workingDir;
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files.createTempDirectory(DatasourceCountryPreparationTest.class.getSimpleName());
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SparkConf conf = new SparkConf();
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conf.setAppName(DatasourceCountryPreparationTest.class.getSimpleName());
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conf.setMaster("local[*]");
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conf.set("spark.driver.host", "localhost");
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conf.set("hive.metastore.local", "true");
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conf.set("spark.ui.enabled", "false");
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conf.set("spark.sql.warehouse.dir", workingDir.toString());
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conf.set("hive.metastore.warehouse.dir", workingDir.resolve("warehouse").toString());
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spark = SparkSession
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.builder()
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.appName(DatasourceCountryPreparationTest.class.getSimpleName())
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.config(conf)
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.getOrCreate();
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}
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@AfterAll
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public static void afterAll() throws IOException {
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FileUtils.deleteDirectory(workingDir.toFile());
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spark.stop();
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}
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@Test
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void testPrepareDatasourceCountry() throws Exception {
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final String sourcePath = getClass()
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.getResource("/eu/dnetlib/dhp/countrypropagation/graph")
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.getPath();
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PrepareDatasourceCountryAssociation
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.main(
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new String[] {
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"--isSparkSessionManaged", Boolean.FALSE.toString(),
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"--sourcePath", sourcePath,
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"--outputPath", workingDir.toString() + "/datasourceCountry",
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"--allowedtypes", "pubsrepository::institutional",
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"--whitelist",
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"10|openaire____::3795d6478e30e2c9f787d427ff160944;10|opendoar____::16e6a3326dd7d868cbc926602a61e4d0;10|eurocrisdris::fe4903425d9040f680d8610d9079ea14;10|openaire____::5b76240cc27a58c6f7ceef7d8c36660e;10|openaire____::172bbccecf8fca44ab6a6653e84cb92a;10|openaire____::149c6590f8a06b46314eed77bfca693f;10|eurocrisdris::a6026877c1a174d60f81fd71f62df1c1;10|openaire____::4692342f0992d91f9e705c26959f09e0;10|openaire____::8d529dbb05ec0284662b391789e8ae2a;10|openaire____::345c9d171ef3c5d706d08041d506428c;10|opendoar____::1c1d4df596d01da60385f0bb17a4a9e0;10|opendoar____::7a614fd06c325499f1680b9896beedeb;10|opendoar____::1ee3dfcd8a0645a25a35977997223d22;10|opendoar____::d296c101daa88a51f6ca8cfc1ac79b50;10|opendoar____::798ed7d4ee7138d49b8828958048130a;10|openaire____::c9d2209ecc4d45ba7b4ca7597acb88a2;10|eurocrisdris::c49e0fe4b9ba7b7fab717d1f0f0a674d;10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539;10|eurocrisdris::432ca599953ff50cd4eeffe22faf3e48"
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});
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final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
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JavaRDD<DatasourceCountry> tmp = sc
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.textFile(workingDir.toString() + "/datasourceCountry")
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.map(item -> OBJECT_MAPPER.readValue(item, DatasourceCountry.class));
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Assertions.assertEquals(3, tmp.count());
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Assertions
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.assertEquals(
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1, tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14"))
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.count());
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Assertions
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.assertEquals(
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1, tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280"))
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.count());
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Assertions
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.assertEquals(
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1, tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539"))
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.count());
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Assertions
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.assertEquals(
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"NL", tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14"))
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.collect()
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.get(0)
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.getCountry()
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.getClassid());
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Assertions
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.assertEquals(
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"Netherlands", tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|eurocrisdris::fe4903425d9040f680d8610d9079ea14"))
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.collect()
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.get(0)
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.getCountry()
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.getClassname());
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Assertions
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.assertEquals(
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"IT", tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280"))
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.collect()
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.get(0)
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.getCountry()
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.getClassid());
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Assertions
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.assertEquals(
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"Italy", tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|opendoar____::f0dd4a99fba6075a9494772b58f95280"))
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.collect()
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.get(0)
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.getCountry()
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.getClassname());
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Assertions
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.assertEquals(
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"FR", tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539"))
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.collect()
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.get(0)
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.getCountry()
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.getClassid());
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Assertions
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.assertEquals(
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"France", tmp
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.filter(
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dsc -> dsc
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.getDataSourceId()
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.equals("10|eurocrisdris::9ae43d14471c4b33661fedda6f06b539"))
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.collect()
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.get(0)
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.getCountry()
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.getClassname());
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tmp.foreach(e -> System.out.println(OBJECT_MAPPER.writeValueAsString(e)));
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}
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}
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