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429 Commits

Author SHA1 Message Date
Giambattista Bloisi 2f3cf6d0e7 Fix cleaning of Pmid where parsing of numbers stopped at first not leading 0' character 2023-10-06 14:20:15 +02:00
Giambattista Bloisi 2c235e82ad Fix cleaning of Pmid where parsing of numbers stopped at first not leading 0' character 2023-10-06 12:35:54 +02:00
Claudio Atzori eed9fe0902 code formatting 2023-10-06 12:31:17 +02:00
Claudio Atzori 73c49b8d26 Merge branch 'beta' into SWH_integration 2023-10-06 12:21:51 +02:00
Claudio Atzori c9a5ad6a02 extending the coverage of the peer non-unknown refereed instances 2023-10-02 16:28:42 +02:00
Serafeim Chatzopoulos ab0d70691c Add step for archiving repoUrls to SWH 2023-09-28 20:56:18 +03:00
Serafeim Chatzopoulos ed9c81a0b7 Add steps to collect last visit data && archive not found repository URLs 2023-09-27 19:00:54 +03:00
Claudio Atzori 8a6892cc63 [graph dedup] consistency wf should not remove the relations while dispatching the entities 2023-09-12 21:27:05 +02:00
Claudio Atzori dc80ab14d3 [graph dedup] consistency wf should not remove the relations while dispatching the entities 2023-09-12 14:34:28 +02:00
Giambattista Bloisi 6cc7d8ca7b GroupEntities and DispatchEntites are now merged in GroupEntitiesSparkJob 2023-08-30 10:43:31 +02:00
Claudio Atzori bf35280ea6 code formatting 2023-08-29 11:11:00 +02:00
Giambattista Bloisi 95cd2b9b1e Make filterInvisible a mandatory parameter of DispathEntitiesSparkJob 
Make filterInvisible a mandatory parameter of both dedup/consistency and graph/group oozie workflows
 2023-08-10 11:53:48 +02:00
Giambattista Bloisi fab9920271 DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag 2023-08-09 15:41:43 +02:00
Miriam Baglioni 599828ce35 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2023-08-09 13:07:13 +02:00
Miriam Baglioni c25ac21e5e Merge pull request 'graph cleaning, suggestions from ticket 8898' (#325) from cleaning_8898 into beta 
Reviewed-on: #325
 2023-08-08 11:14:19 +02:00
Claudio Atzori 0bc74e2000 code formatting 2023-08-02 11:52:10 +02:00
Claudio Atzori 7180911ded [graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests 2023-08-02 11:44:14 +02:00
Claudio Atzori b9dddbfe54 rule out records with NULL dataInfo, except for Relations 2023-07-31 17:53:54 +02:00
Claudio Atzori da1727f93f rule out records with NULL dataInfo, except for Relations 2023-07-31 17:52:56 +02:00
Claudio Atzori 11ffb9bd68 rule out records with NULL dataInfo 2023-07-31 12:35:33 +02:00
Claudio Atzori ccac6a7f75 rule out records with NULL dataInfo 2023-07-31 12:35:05 +02:00
Claudio Atzori d512df8612 code formatting 2023-07-26 09:14:08 +02:00
Claudio Atzori d8435a6512 inverted condition 2023-07-25 17:39:57 +02:00
Claudio Atzori 59764145bb cherry picked & fixed commit 270df939c4 2023-07-25 17:39:00 +02:00
Claudio Atzori 270df939c4 partial implementation of the suggestions from https://support.openaire.eu/issues/8898 2023-07-25 17:29:50 +02:00
Claudio Atzori c754397a19 Merge branch 'beta' into pid_cleaning 2023-07-24 10:49:31 +02:00
Giambattista Bloisi 38dfebfbe6 Disable MdStoreClientTest test as it requires a local mongodb running and it does not perform any assertions 2023-07-19 14:18:56 +02:00
Miriam Baglioni 9e8e39f78a - 2023-07-19 11:35:58 +02:00
Claudio Atzori f3a85e224b merged from branch beta the bulk tagging (single step, negative constraints), the cleanig worflow (single step, pid type based cleaning), instance level fulltext 2023-06-28 13:33:57 +02:00
Sandro La Bruzzo 9910ce06ae added to CreateSimRel the feature to write time log 2023-06-28 11:38:16 +02:00
Sandro La Bruzzo b195da3a83 Added utility to write time logs during the deduplication phase 2023-06-28 11:20:09 +02:00
Claudio Atzori 0f5a819f44 [graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests 2023-06-23 16:10:49 +02:00
Miriam Baglioni e4b27182d0 [master] refactoring 2023-06-21 11:15:53 +02:00
Claudio Atzori 1d33074fd1 WIP: pid cleaning 2023-06-09 16:47:25 +02:00
Miriam Baglioni d9506035e4 [ZenodoApi] gone back to okhttp3 to send the payload. 2023-06-09 12:05:02 +02:00
Claudio Atzori 8a463cc3e8 fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common 2023-05-15 15:44:46 +02:00
Claudio Atzori d02916ef82 code formatting 2023-05-02 11:05:37 +02:00
Claudio Atzori 851f664bd9 Merge branch 'beta' into graph_cleaning_refactoring 2023-05-02 09:55:40 +02:00
Miriam Baglioni 9fc8ebe98b refactoring 2023-04-19 09:32:13 +02:00
Miriam Baglioni 73f77575bd [ZenodoApiClient] align with master version 2023-04-18 10:25:27 +02:00
Miriam Baglioni 24c41806ac [ZenodoApiClienttest] change test to mirror change in the omplementation 2023-04-18 09:08:09 +02:00
Miriam Baglioni 087b5a7973 [ZenodiAPIClient] new version of the API to connect to Zenodo (change the http client 2023-04-17 18:59:22 +02:00
Miriam Baglioni c6a7602b3e refactoring after compilation 2023-04-06 14:45:01 +02:00
Claudio Atzori 2a6ba29b64 [graph cleaning] unit tests & cleanup 2023-04-04 12:34:51 +02:00
Miriam Baglioni 9a9cc6a1dd changed the way the tar archive is build to support renaming in case we need to change .tt.gz into .json.gz 2023-04-04 11:40:58 +02:00
Claudio Atzori 6d3d18d8b5 [graph cleaning] WIP: refactoring of the cleaning stages 2023-03-16 17:23:36 +01:00
Miriam Baglioni 32870339f5 refactoring after compile 2023-02-13 13:06:48 +01:00
Sandro La Bruzzo 0b9819f1ab Code formatted 2023-02-08 10:32:33 +01:00
Sandro La Bruzzo 6c81a161d2 Merge remote-tracking branch 'origin/beta' into 8231-mdstore-synch-improve 2023-02-08 10:29:09 +01:00
Miriam Baglioni b713132db7 [Cleaning] adding missing classes 2022-12-21 12:49:08 +01:00
Claudio Atzori 9cf0a98699 [cleaning] set the common subject classid/name 2022-12-20 10:17:33 +01:00
Claudio Atzori b8bafab8a0 [cleaning] improved vocabulary based mapping, specialization for the strict vocab cleaning 2022-12-12 14:43:03 +01:00
Sandro La Bruzzo 5a48a2fb18 implemented synch for single mdstore 2022-12-01 11:34:43 +01:00
Claudio Atzori 11695ba649 [graph cleaning] patch also the result's collectedfrom and hostedby datasource name according to the datasource master-duplicate mapping 2022-11-28 10:18:43 +01:00
Claudio Atzori 24ef301cc1 [graph cleaning] patch the result's collectedfrom and hostedby identifiers according to the datasource master-duplicate mapping 2022-11-28 09:54:18 +01:00
Claudio Atzori b47aaf4dd1 [cleaning] subjects declared as belonging to specific vocabularies whose values are not found in the vocab are set to type keyword 2022-10-13 11:23:43 +02:00
Claudio Atzori b7c387c21f cleaning of subjects: avoid duplicated subjects, prioritise collected vs inferred or other sources 2022-08-12 15:09:16 +02:00
Claudio Atzori adb526b0e1 Merge branch 'beta' into clean_subjects 2022-08-12 10:51:17 +02:00
Claudio Atzori cb7c07c54e [scholix] added step to create tar archive 2022-08-11 11:25:24 +02:00
Claudio Atzori 3418ce50ac cleaning of subjects: perform the cleaning when the given value is equivalent to one of the terms in the vocabulary 2022-08-08 12:48:47 +02:00
Claudio Atzori 32cee1f619 WIP: cleaning of subjects 2022-08-05 12:32:08 +02:00
Claudio Atzori b78889a0ce WIP: cleaning of subjects 2022-08-05 09:11:37 +02:00
Claudio Atzori 27a91841e7 WIP: cleaning of subjects 2022-08-04 11:39:39 +02:00
Claudio Atzori 09ccc7b472 Merge branch 'beta' into project_organization_contribution 2022-07-28 09:49:59 +02:00
Claudio Atzori 1138b2ac8e code formatting 2022-07-19 14:15:49 +02:00
Claudio Atzori 0cb1c70788 code formatting 2022-07-01 10:44:08 +02:00
Claudio Atzori 7da24c1dec added more logging 2022-06-28 13:47:49 +02:00
Claudio Atzori a8773af0cb Merge branch 'beta' into project_organization_contribution 2022-06-27 09:37:40 +02:00
Claudio Atzori 316b0fd73c added 'von' to the name particles file 2022-06-27 09:36:51 +02:00
Claudio Atzori 5130eac247 mapping by participant project contribution 2022-06-24 17:16:42 +02:00
Claudio Atzori b295a40d9c restored use of name_particles when parsing author names 2022-06-16 12:20:43 +02:00
Miriam Baglioni ab8868bd3a [ZENODO-API] changed to iterate in all the deposited products and not just the last ten 2022-06-08 17:03:15 +02:00
Claudio Atzori da611cfbbd [eosc_services] resolved merge conflicts 2022-05-03 13:37:15 +02:00
Claudio Atzori f5f532d134 EOSC Services - ongoing update 2022-04-29 12:25:24 +02:00
Miriam Baglioni b61efd613b [Measures] addressed comments in the PR 2022-04-21 12:09:37 +02:00
Miriam Baglioni c304657d91 [Measures] put the logic in common, no need to change the schema 2022-04-21 11:27:26 +02:00
Miriam Baglioni b7c2340952 [HostedByMap - DOIBoost] changed to use code moved to common since used also from hostedbymap now 2022-03-04 11:05:23 +01:00
Alessia Bardi 6158170334 testing delegated authority and bumped dep to schemas 2022-02-11 18:05:18 +01:00
Claudio Atzori db299dd8ab fixed typo 2022-01-27 16:24:06 +01:00
Claudio Atzori c42623f006 added NPE checks 2022-01-21 14:30:09 +01:00
Claudio Atzori 391aa1373b added unit test 2022-01-19 17:13:21 +01:00
Claudio Atzori 62f135262e code formatting 2022-01-19 12:30:52 +01:00
Claudio Atzori 44a937f4ed factored out entity grouping implementation, extended to consider results from delegated authorities rather than identical records from other sources 2022-01-19 12:24:52 +01:00
Miriam Baglioni 42e8f76778 [GraphCleaning] change the return value in the filtering function to avoid to lose the APC entities 2022-01-13 16:06:43 +01:00
Claudio Atzori 4f212652ca scalafmt: code formatting 2022-01-11 16:57:48 +01:00
Miriam Baglioni be0acccf42 Merge branch 'beta' into dump 2021-12-22 12:39:57 +01:00
Sandro La Bruzzo 3920d68992 Fixed workflow generation of delta in datacite 2021-12-21 11:41:49 +01:00
Sandro La Bruzzo b881ee5ef8 [scholexplorer] 
- implemented generation of scholix of delta update of datacite
 2021-12-15 11:25:32 +01:00
Miriam Baglioni 56409d1281 [Dump] resolved conflicts with beta and merging 2021-12-14 15:03:45 +01:00
Miriam Baglioni a3592b463a Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-14 14:58:26 +01:00
Claudio Atzori aff3ddc8d2 added cleaning for the format field, removing carrige return and tab characters 2021-12-14 11:41:46 +01:00
Miriam Baglioni 936578aaf1 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-13 15:01:47 +01:00
Claudio Atzori 41c70c607d cleaning workflow assigns the proper default instance type when a value could not be cleaned using the vocabularies 2021-12-09 16:44:28 +01:00
Claudio Atzori e6e177dda0 vocabulary based cleaning considers also the term label when looking up for a synonym 2021-12-09 13:57:53 +01:00
Miriam Baglioni b113586207 resolved conflicts 2021-12-07 10:16:14 +01:00
Sandro La Bruzzo 5d51b3dd4a Merge pull request 'scala_refactor' (#169) from scala_refactor into beta 
Reviewed-on: #169
 2021-12-06 15:33:44 +01:00
Miriam Baglioni 96a7d46278 [Graph Dump] fixed tests 2021-12-06 15:06:32 +01:00
Sandro La Bruzzo 81bf604059 [scala-refactor] Module dhp-common: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 11:29:24 +01:00
Claudio Atzori 9132727793 fixed date cleaning test 2021-12-06 10:54:05 +01:00
Claudio Atzori 863a2f9db3 avoid to filter OAF records defined as invisible = true 2021-12-03 09:08:12 +01:00
Miriam Baglioni 8905a39bf3 mergin with branch beta 2021-12-02 13:17:29 +01:00
Sandro La Bruzzo 1e1f5e4fe0 minor fix 2021-11-25 13:03:17 +01:00
Sandro La Bruzzo 2164a2a889 Datacite: Code Refactor generated a general SparkApplication Scala where all the spark scala have to inherit 
Commented a little the Datacite transformation code
 2021-11-25 10:54:13 +01:00
Miriam Baglioni 9fae872181 [Graph Dump] changed to mirror the changes in the model 2021-11-19 11:25:50 +01:00
Claudio Atzori 82a4e4efae [cleaning wf] fixed methodology to rule out invalid result titles, based on https://support.openaire.eu/issues/7206 2021-11-17 14:17:22 +01:00
Claudio Atzori 49f897ef29 [cleaning wf] fixed regex used to spot garbage in result titles; adjusted threshold for filtering titles 2021-11-16 15:24:23 +01:00
Sandro La Bruzzo aafdffa6b3 resolved conflict 2021-10-26 09:45:46 +02:00
Sandro La Bruzzo 034304b33a conflict resolved on merge 2021-10-26 09:40:47 +02:00
Claudio Atzori 6b34ba737e minor 2021-10-21 14:16:18 +02:00
Sandro La Bruzzo ae4e99a471 Adapted workflow of resolution of PID to work into OpenAIRE data workflow 
- Added relations in both verse on all Scholexplorer datasources
 2021-10-20 17:12:16 +02:00
Miriam Baglioni c8321ad31a merge with branch beta 2021-10-01 12:59:08 +02:00
Claudio Atzori 663b1556d7 manually integrating PR#140 #140 2021-09-15 16:40:25 +02:00
Claudio Atzori baed5e3337 test classes moved in specific components 2021-08-13 12:14:47 +02:00
Claudio Atzori 3359f73fcf cleanup & best practices 2021-08-13 12:00:42 +02:00
Miriam Baglioni 58f241f4a2 GetCSV refactoring - changed due to change of input resource 2021-08-13 10:04:44 +02:00
Miriam Baglioni f3d575f749 GetCSV refactoring - changed due to changes in input resource 2021-08-13 10:03:57 +02:00
Miriam Baglioni a5f6edfa6c GetCSV refactoring - changed to mirror the original model class 2021-08-13 09:30:03 +02:00
Miriam Baglioni 733bcaecf6 GetCSV refactoring - added test class (all the tests are disabled since they refer to remote resource) 2021-08-12 17:58:52 +02:00
Miriam Baglioni bfe8f5335c GetCSV refactoring - copied model classes in test path 2021-08-12 17:58:14 +02:00
Miriam Baglioni 6e84b3951f GetCSV refactoring - moving classes to dhp-common that have dependency with GetCSV class (that was located in graph-mapper) 2021-08-12 17:57:41 +02:00
Miriam Baglioni f9b6b45d85 reverting 2021-08-11 17:04:48 +02:00
Miriam Baglioni 8da3a25cf6 merging with branch beta 2021-08-11 15:55:34 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Miriam Baglioni 6bd1eca7e0 merge branch with beta 2021-08-05 15:23:32 +02:00
Miriam Baglioni ee13da9258 merge branch with master 2021-08-05 11:34:20 +02:00
Miriam Baglioni 1d6ac3715b merge branch with beta 2021-07-30 11:58:29 +02:00
Claudio Atzori a9961a1835 [cleaning] title cleaning based on the me.xuender:unidecode library 2021-07-28 16:36:33 +02:00
Claudio Atzori 6dddad86ee [cleaning] title cleaning based on the me.xuender:unidecode library 2021-07-28 16:21:29 +02:00
Miriam Baglioni 74f801b689 mergin with branch beta 2021-07-27 13:18:31 +02:00
Miriam Baglioni 35e395eae8 merge with master 2021-07-27 12:34:59 +02:00
Miriam Baglioni eb07f7f40f Hosted By Map 2021-07-27 12:27:26 +02:00
Claudio Atzori bc835d2024 [cleaning] fixed filtering function for missing titles 2021-07-23 11:56:13 +02:00
Claudio Atzori ffdb2a3ea3 [cleaning] fixed filtering function for missing titles 2021-07-23 11:55:55 +02:00
Sandro La Bruzzo 62ae36a3d2 fixed NPE 2021-07-22 15:41:38 +02:00
Sandro La Bruzzo d94565862a fixed NPE 2021-07-21 21:23:11 +02:00
Sandro La Bruzzo 31d2d6d41e Scholexplorer: introduction of dedup openaire 2021-07-21 18:09:32 +02:00
Miriam Baglioni d418c309f5 removed the part after part-x- in the file name generated by spark. It was too long and created problems while creating the tar entries 2021-07-13 17:11:49 +02:00
Sandro La Bruzzo ad50415167 Merge remote-tracking branch 'origin/stable_ids' into stable_id_scholexplorer 2021-06-24 17:20:50 +02:00
Claudio Atzori 67afd06cd1 [cleaning] cleaning instance.pid and instance.alternateidentifier using the same procedure used to clean result.pid 2021-06-24 12:10:17 +02:00
Sandro La Bruzzo cc0f2b11fb Implemented mapping from pubmed baseline to OAF 2021-06-16 14:56:24 +02:00
Claudio Atzori 2039bb9f5f orcid / orcid_pending cleaning backported from master branch 2021-06-14 09:40:50 +02:00
Claudio Atzori a900bfb874 delegating the date parsing to https://github.com/sisyphsu/dateparser 2021-06-11 16:53:01 +02:00
Claudio Atzori eb6acfbabc [cleaning] removing non parsable relation.validationDate(s) 2021-05-28 10:50:44 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Claudio Atzori d4c3476152 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 11:08:54 +02:00
Claudio Atzori d1cbee8413 imported methods from CleaningFunctions, defined in GraphCleaningFunctions 2021-05-10 16:43:39 +02:00
Claudio Atzori 3797543600 MDStoreManager model classes moved in dhp-schemas 2021-05-10 14:32:05 +02:00
Claudio Atzori b1785ba77c alternative way to set timeouts for the ISLookup client 2021-05-05 11:23:46 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00