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429 Commits

Author SHA1 Message Date
Giambattista Bloisi 3f22c101d9 Merge pull request 'Enrich authors with ORCID info using new matching algorithm' (#398) from new_orcid_enhancement into beta 
Reviewed-on: #398
 2024-03-22 17:29:20 +01:00
Claudio Atzori aaa73f89d1 refactoring the Oaf records merge utilities into dhp-common 2024-03-22 16:34:03 +01:00
Sandro La Bruzzo 58dbe71d39 update crossref mapping to be runnable separately as a single datasource outside doiboost 2024-03-20 17:04:52 +01:00
Giambattista Bloisi 664a381d31 Unify merge logic of entities in MergeUtils.class 2024-03-18 16:04:49 +01:00
Claudio Atzori af154d4456 implemented changes from #9497: sort abstracts by string length, included author fullnames in the related results, expanded instance details within each children/result XML element 2024-03-14 16:21:23 +01:00
Sandro La Bruzzo c532831718 Moved Crossref Mapping on dhp-aggregations, 
refactored code, avoid to use utility for create part of the oaf defined in DOIBoostMappingUtils, used instead utility in OafMappingUtils
 2024-03-13 06:56:10 +01:00
Giambattista Bloisi 9092075760 Enrich authors with ORCID info using new matching algorithm 2024-03-11 13:23:59 +01:00
Claudio Atzori bb82052c40 [graph cleaning] rule out datasources without an officialname 2024-02-05 14:59:27 +02:00
Claudio Atzori e8630a6d03 [graph cleaning] rule out datasources without an officialname 2024-02-05 14:59:06 +02:00
Claudio Atzori 4d0c59669b merged changes from beta 2024-01-26 16:08:54 +01:00
Claudio Atzori 9e8fc6aa88 [collection] increased logging from the oai-pmh metadata collection process 2024-01-26 09:17:20 +01:00
Claudio Atzori 3e96777cc4 [collection] increased logging from the oai-pmh metadata collection process 2024-01-23 15:21:03 +01:00
Claudio Atzori 6fd25cf549 code formatting 2024-01-23 08:47:12 +01:00
Claudio Atzori f76852f385 Merge branch 'beta' into update_pivots_table 2024-01-22 16:37:22 +01:00
Claudio Atzori 1c6db320f4 [graph provision] obtain context info from the context API instead from the ISLookUp service 2024-01-22 15:53:17 +01:00
Giambattista Bloisi 21a14fcd80 Reusable RunSQLSparkJob for executing SQL in Spark through Oozie Spark Actions 
Implements pivots table update oozie workflow
 2024-01-15 10:18:14 +01:00
Claudio Atzori 1726f49790 code formatting 2023-12-15 10:37:02 +01:00
Claudio Atzori 98cce5bfb2 code formatting 2023-12-12 09:59:05 +01:00
Claudio Atzori 84d54643cf [cleaning] allow enriched orcids to pass the cleaning, rule out non-orcid author pids 2023-12-12 09:57:00 +01:00
Claudio Atzori aba95ed1d1 code formatting 2023-12-08 17:06:19 +01:00
Claudio Atzori 34abd0fc43 Merge branch 'beta' into clean_license_publisher 2023-12-08 16:58:27 +01:00
Giambattista Bloisi 613ec5ffce Add profiles for different spark versions: spark-24, spark-34, spark-35 2023-12-05 19:11:06 +01:00
Claudio Atzori 7c3041b276 avoid NPEs 2023-12-03 16:49:49 +01:00
Claudio Atzori 74b185d07b avoid NPEs 2023-12-03 16:18:20 +01:00
Claudio Atzori e6086efc53 avoid NPEs in Vocabulary.getTermBySynonym 2023-12-03 13:33:20 +01:00
Claudio Atzori d33f578e54 code formatting 2023-12-01 15:14:17 +01:00
Claudio Atzori 622fafbd2e Merge branch 'beta' into orcid_import 2023-12-01 12:28:14 +01:00
Sandro La Bruzzo bf0fd27c36 Removed unused function 
Applied PR Comment of Giambattista in the PR
 2023-12-01 12:16:42 +01:00
Sandro La Bruzzo cdfb7588dd code formatting 2023-11-30 15:31:42 +01:00
Sandro La Bruzzo 5e22b67b8a Merge remote-tracking branch 'origin/beta' into orcid_import 2023-11-30 15:27:46 +01:00
Claudio Atzori 4e1aac2e2f resolved conflict in pom.xml before applying the changes from [COAR based resource types & Irish tender] #350 2023-11-29 14:37:52 +01:00
Sandro La Bruzzo aa239ec673 Changed implementation of check similarity to verify exact match of name instead of the first char 2023-11-29 11:17:41 +01:00
Sandro La Bruzzo 59111713fa added comment 2023-11-28 09:00:48 +01:00
Sandro La Bruzzo 6f4d0c05ea Implemented Author MErger for ORCID that takes in account the case when name and surname are swapped 2023-11-28 08:43:56 +01:00
Sandro La Bruzzo 34a4b3cbdf Implemented ORCID Enrichment 2023-11-24 12:39:58 +01:00
Claudio Atzori 1ba582de3c [graph cleaning] added cleaning for result.publisher and result.instance.license 2023-11-23 16:27:19 +01:00
Claudio Atzori 11a1207f9c [graph cleaning] applying coar based vocabularies in bulk 2023-11-22 12:22:14 +01:00
Claudio Atzori 5f1ed61c1f merging from bulkTag branch 2023-11-03 12:51:37 +01:00
Claudio Atzori dde2fec035 [graph cleaning] cleanup 2023-10-31 14:35:33 +01:00
Claudio Atzori 262d7c581b [graph cleaning] implemented further suggestions from https://support.openaire.eu/issues/8898 2023-10-31 14:34:10 +01:00
Miriam Baglioni 0097f4e64b Removed Query community testing. Removed package from common related to the interaction with Zenodo since it was moved to the dump-project 2023-10-26 09:38:09 +02:00
Miriam Baglioni a9ede1e989 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2023-10-20 10:14:43 +02:00
Claudio Atzori b0fed1725e avoid NPEs 2023-10-19 12:13:45 +02:00
Claudio Atzori a24178cb93 Merge branch 'beta' into resource_types 2023-10-17 11:09:50 +02:00
Claudio Atzori d28b7085f6 more NPE checks 2023-10-17 11:09:31 +02:00
Giambattista Bloisi 0e44b037a5 FIX: GroupEntitiesSparkJob deletes whole graph outputPath instead of its temporary folder 2023-10-17 07:54:01 +02:00
Claudio Atzori 39d24d5469 Merge branch 'beta' into resource_types 2023-10-16 11:56:38 +02:00
Claudio Atzori 05ee7d8b09 [graph cleaning] avoid NPEs 2023-10-12 09:13:42 +02:00
Claudio Atzori 554551682d [raw graph] adopting the new COAR based vocabularies for the resource typing 2023-10-11 16:09:19 +02:00
Claudio Atzori 8108491722 Merge branch 'beta' into peer_reviewed 2023-10-06 14:21:52 +02:00
Giambattista Bloisi 2f3cf6d0e7 Fix cleaning of Pmid where parsing of numbers stopped at first not leading 0' character 2023-10-06 14:20:15 +02:00
Giambattista Bloisi 2c235e82ad Fix cleaning of Pmid where parsing of numbers stopped at first not leading 0' character 2023-10-06 12:35:54 +02:00
Claudio Atzori eed9fe0902 code formatting 2023-10-06 12:31:17 +02:00
Claudio Atzori 73c49b8d26 Merge branch 'beta' into SWH_integration 2023-10-06 12:21:51 +02:00
Claudio Atzori c9a5ad6a02 extending the coverage of the peer non-unknown refereed instances 2023-10-02 16:28:42 +02:00
Serafeim Chatzopoulos ab0d70691c Add step for archiving repoUrls to SWH 2023-09-28 20:56:18 +03:00
Serafeim Chatzopoulos ed9c81a0b7 Add steps to collect last visit data && archive not found repository URLs 2023-09-27 19:00:54 +03:00
Claudio Atzori 8a6892cc63 [graph dedup] consistency wf should not remove the relations while dispatching the entities 2023-09-12 21:27:05 +02:00
Claudio Atzori dc80ab14d3 [graph dedup] consistency wf should not remove the relations while dispatching the entities 2023-09-12 14:34:28 +02:00
Giambattista Bloisi 6cc7d8ca7b GroupEntities and DispatchEntites are now merged in GroupEntitiesSparkJob 2023-08-30 10:43:31 +02:00
Claudio Atzori bf35280ea6 code formatting 2023-08-29 11:11:00 +02:00
Giambattista Bloisi 95cd2b9b1e Make filterInvisible a mandatory parameter of DispathEntitiesSparkJob 
Make filterInvisible a mandatory parameter of both dedup/consistency and graph/group oozie workflows
 2023-08-10 11:53:48 +02:00
Giambattista Bloisi fab9920271 DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag 2023-08-09 15:41:43 +02:00
Miriam Baglioni 599828ce35 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2023-08-09 13:07:13 +02:00
Miriam Baglioni c25ac21e5e Merge pull request 'graph cleaning, suggestions from ticket 8898' (#325) from cleaning_8898 into beta 
Reviewed-on: #325
 2023-08-08 11:14:19 +02:00
Claudio Atzori 0bc74e2000 code formatting 2023-08-02 11:52:10 +02:00
Claudio Atzori 7180911ded [graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests 2023-08-02 11:44:14 +02:00
Claudio Atzori b9dddbfe54 rule out records with NULL dataInfo, except for Relations 2023-07-31 17:53:54 +02:00
Claudio Atzori da1727f93f rule out records with NULL dataInfo, except for Relations 2023-07-31 17:52:56 +02:00
Claudio Atzori 11ffb9bd68 rule out records with NULL dataInfo 2023-07-31 12:35:33 +02:00
Claudio Atzori ccac6a7f75 rule out records with NULL dataInfo 2023-07-31 12:35:05 +02:00
Claudio Atzori d512df8612 code formatting 2023-07-26 09:14:08 +02:00
Claudio Atzori d8435a6512 inverted condition 2023-07-25 17:39:57 +02:00
Claudio Atzori 59764145bb cherry picked & fixed commit 270df939c4 2023-07-25 17:39:00 +02:00
Claudio Atzori 270df939c4 partial implementation of the suggestions from https://support.openaire.eu/issues/8898 2023-07-25 17:29:50 +02:00
Claudio Atzori c754397a19 Merge branch 'beta' into pid_cleaning 2023-07-24 10:49:31 +02:00
Giambattista Bloisi 38dfebfbe6 Disable MdStoreClientTest test as it requires a local mongodb running and it does not perform any assertions 2023-07-19 14:18:56 +02:00
Miriam Baglioni 9e8e39f78a - 2023-07-19 11:35:58 +02:00
Claudio Atzori f3a85e224b merged from branch beta the bulk tagging (single step, negative constraints), the cleanig worflow (single step, pid type based cleaning), instance level fulltext 2023-06-28 13:33:57 +02:00
Sandro La Bruzzo 9910ce06ae added to CreateSimRel the feature to write time log 2023-06-28 11:38:16 +02:00
Sandro La Bruzzo b195da3a83 Added utility to write time logs during the deduplication phase 2023-06-28 11:20:09 +02:00
Claudio Atzori 0f5a819f44 [graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests 2023-06-23 16:10:49 +02:00
Miriam Baglioni e4b27182d0 [master] refactoring 2023-06-21 11:15:53 +02:00
Claudio Atzori 1d33074fd1 WIP: pid cleaning 2023-06-09 16:47:25 +02:00
Miriam Baglioni d9506035e4 [ZenodoApi] gone back to okhttp3 to send the payload. 2023-06-09 12:05:02 +02:00
Claudio Atzori 8a463cc3e8 fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common 2023-05-15 15:44:46 +02:00
Claudio Atzori d02916ef82 code formatting 2023-05-02 11:05:37 +02:00
Claudio Atzori 851f664bd9 Merge branch 'beta' into graph_cleaning_refactoring 2023-05-02 09:55:40 +02:00
Miriam Baglioni 9fc8ebe98b refactoring 2023-04-19 09:32:13 +02:00
Miriam Baglioni 73f77575bd [ZenodoApiClient] align with master version 2023-04-18 10:25:27 +02:00
Miriam Baglioni 24c41806ac [ZenodoApiClienttest] change test to mirror change in the omplementation 2023-04-18 09:08:09 +02:00
Miriam Baglioni 087b5a7973 [ZenodiAPIClient] new version of the API to connect to Zenodo (change the http client 2023-04-17 18:59:22 +02:00
Miriam Baglioni c6a7602b3e refactoring after compilation 2023-04-06 14:45:01 +02:00
Claudio Atzori 2a6ba29b64 [graph cleaning] unit tests & cleanup 2023-04-04 12:34:51 +02:00
Miriam Baglioni 9a9cc6a1dd changed the way the tar archive is build to support renaming in case we need to change .tt.gz into .json.gz 2023-04-04 11:40:58 +02:00
Claudio Atzori 6d3d18d8b5 [graph cleaning] WIP: refactoring of the cleaning stages 2023-03-16 17:23:36 +01:00
Miriam Baglioni 32870339f5 refactoring after compile 2023-02-13 13:06:48 +01:00
Sandro La Bruzzo 0b9819f1ab Code formatted 2023-02-08 10:32:33 +01:00
Sandro La Bruzzo 6c81a161d2 Merge remote-tracking branch 'origin/beta' into 8231-mdstore-synch-improve 2023-02-08 10:29:09 +01:00
Miriam Baglioni b713132db7 [Cleaning] adding missing classes 2022-12-21 12:49:08 +01:00