[graph cleaning] fixed regex behaviour for cleaning ROR and GRID identifiers, added tests
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da1727f93f
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@ -6,14 +6,16 @@ import java.util.regex.Pattern;
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public class FundRefCleaningRule {
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public static String clean(final String fundrefId) {
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public static final Pattern PATTERN = Pattern.compile("\\d+");
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String s = fundrefId
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public static String clean(final String fundRefId) {
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String s = fundRefId
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.toLowerCase()
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.replaceAll("\\s", "");
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Matcher m = Pattern.compile("\\d+").matcher(s);
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if (m.matches()) {
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Matcher m = PATTERN.matcher(s);
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if (m.find()) {
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return m.group();
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} else {
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return "";
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@ -6,13 +6,19 @@ import java.util.regex.Pattern;
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public class GridCleaningRule {
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public static final Pattern PATTERN = Pattern.compile("(?<grid>\\d{4,6}\\.[0-9a-z]{1,2})");
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public static String clean(String grid) {
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String s = grid
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.replaceAll("\\s", "")
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.toLowerCase();
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Matcher m = Pattern.compile("\\d{4,6}\\.[0-9a-z]{1,2}").matcher(s);
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return m.matches() ? "grid." + m.group() : "";
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Matcher m = PATTERN.matcher(s);
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if (m.find()) {
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return "grid." + m.group("grid");
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}
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return "";
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}
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}
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@ -7,10 +7,12 @@ import java.util.regex.Pattern;
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// https://www.wikidata.org/wiki/Property:P213
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public class ISNICleaningRule {
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public static final Pattern PATTERN = Pattern.compile("([0]{4}) ?([0-9]{4}) ?([0-9]{4}) ?([0-9]{3}[0-9X])");
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public static String clean(final String isni) {
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Matcher m = Pattern.compile("([0]{4}) ?([0-9]{4}) ?([0-9]{4}) ?([0-9]{3}[0-9X])").matcher(isni);
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if (m.matches()) {
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Matcher m = PATTERN.matcher(isni);
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if (m.find()) {
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return String.join("", m.group(1), m.group(2), m.group(3), m.group(4));
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} else {
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return "";
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@ -6,10 +6,12 @@ import java.util.regex.Pattern;
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public class PICCleaningRule {
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public static final Pattern PATTERN = Pattern.compile("\\d{9}");
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public static String clean(final String pic) {
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Matcher m = Pattern.compile("\\d{9}").matcher(pic);
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if (m.matches()) {
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Matcher m = PATTERN.matcher(pic);
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if (m.find()) {
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return m.group();
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} else {
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return "";
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@ -1,13 +1,24 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
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public class PmcCleaningRule {
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public static final Pattern PATTERN = Pattern.compile("PMC\\d{1,8}");
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public static String clean(String pmc) {
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String s = pmc
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.replaceAll("\\s", "")
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.toUpperCase();
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return s.matches("^PMC\\d{1,8}$") ? s : "";
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final Matcher m = PATTERN.matcher(s);
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if (m.find()) {
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return m.group();
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}
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return "";
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}
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}
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@ -1,16 +1,25 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import java.util.regex.Matcher;
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import java.util.regex.Pattern;
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// https://researchguides.stevens.edu/c.php?g=442331&p=6577176
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public class PmidCleaningRule {
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public static final Pattern PATTERN = Pattern.compile("[1-9]{1,8}");
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public static String clean(String pmid) {
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String s = pmid
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.toLowerCase()
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.replaceAll("\\s", "")
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.trim()
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.replaceAll("^0+", "");
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return s.matches("^\\d{1,8}$") ? s : "";
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.replaceAll("\\s", "");
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final Matcher m = PATTERN.matcher(s);
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if (m.find()) {
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return m.group();
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}
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return "";
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}
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}
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@ -7,12 +7,21 @@ import java.util.regex.Pattern;
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// https://ror.readme.io/docs/ror-identifier-pattern
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public class RorCleaningRule {
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public static final String ROR_PREFIX = "https://ror.org/";
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private static final Pattern PATTERN = Pattern.compile("(?<ror>0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2})");
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public static String clean(String ror) {
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String s = ror
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.replaceAll("\\s", "")
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.toLowerCase();
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Matcher m = Pattern.compile("0[a-hj-km-np-tv-z|0-9]{6}[0-9]{2}").matcher(s);
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return m.matches() ? "https://ror.org/" + m.group() : "";
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Matcher m = PATTERN.matcher(s);
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if (m.find()) {
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return ROR_PREFIX + m.group("ror");
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}
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return "";
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}
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}
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@ -0,0 +1,18 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import org.junit.jupiter.api.Test;
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class GridCleaningRuleTest {
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@Test
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void testCleaning() {
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assertEquals("grid.493784.5", GridCleaningRule.clean("grid.493784.5"));
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assertEquals("grid.493784.5x", GridCleaningRule.clean("grid.493784.5x"));
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assertEquals("grid.493784.5x", GridCleaningRule.clean("493784.5x"));
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assertEquals("", GridCleaningRule.clean("493x784.5x"));
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}
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}
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@ -0,0 +1,19 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import org.junit.jupiter.api.Test;
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class ISNICleaningRuleTest {
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@Test
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void testCleaning() {
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assertEquals("0000000463436020", ISNICleaningRule.clean("0000 0004 6343 6020"));
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assertEquals("0000000463436020", ISNICleaningRule.clean("0000000463436020"));
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assertEquals("", ISNICleaningRule.clean("Q30256598"));
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assertEquals("0000000493403529", ISNICleaningRule.clean("ISNI:0000000493403529"));
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assertEquals("000000008614884X", ISNICleaningRule.clean("0000 0000 8614 884X"));
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}
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}
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@ -0,0 +1,19 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import org.junit.jupiter.api.Test;
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class PICCleaningRuleTest {
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@Test
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void testCleaning() {
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assertEquals("887624982", PICCleaningRule.clean("887624982"));
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assertEquals("", PICCleaningRule.clean("887 624982"));
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assertEquals("887624982", PICCleaningRule.clean(" 887624982 "));
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assertEquals("887624982", PICCleaningRule.clean(" 887624982x "));
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assertEquals("887624982", PICCleaningRule.clean(" 88762498200 "));
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}
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}
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@ -0,0 +1,19 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import org.junit.jupiter.api.Test;
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class PmcCleaningRuleTest {
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@Test
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void testCleaning() {
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assertEquals("PMC1234", PmcCleaningRule.clean("PMC1234"));
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assertEquals("PMC1234", PmcCleaningRule.clean(" PMC1234"));
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assertEquals("PMC12345678", PmcCleaningRule.clean("PMC12345678"));
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assertEquals("PMC12345678", PmcCleaningRule.clean("PMC123456789"));
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assertEquals("PMC12345678", PmcCleaningRule.clean("PMC 12345678"));
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}
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}
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@ -0,0 +1,18 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import org.junit.jupiter.api.Test;
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class PmidCleaningRuleTest {
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@Test
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void testCleaning() {
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assertEquals("1234", PmidCleaningRule.clean("01234"));
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assertEquals("1234567", PmidCleaningRule.clean("0123 4567"));
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assertEquals("123", PmidCleaningRule.clean("0123x4567"));
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assertEquals("", PmidCleaningRule.clean("abc"));
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}
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}
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@ -0,0 +1,17 @@
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package eu.dnetlib.dhp.schema.oaf.utils;
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import static org.junit.jupiter.api.Assertions.assertEquals;
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import org.junit.jupiter.api.Test;
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class RorCleaningRuleTest {
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@Test
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void testCleaning() {
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assertEquals("https://ror.org/05rpz9w55", RorCleaningRule.clean("https://ror.org/05rpz9w55"));
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assertEquals("https://ror.org/05rpz9w55", RorCleaningRule.clean("05rpz9w55"));
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assertEquals("", RorCleaningRule.clean("05rpz9w_55"));
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}
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}
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