GetCSV refactoring - added test class (all the tests are disabled since they refer to remote resource)
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package eu.dnetlib.dhp.common.collection;
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import java.io.*;
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import java.nio.file.Files;
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import org.apache.hadoop.conf.Configuration;
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import org.apache.hadoop.fs.FileSystem;
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import org.apache.hadoop.fs.LocalFileSystem;
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import org.apache.hadoop.fs.Path;
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import org.junit.jupiter.api.Assertions;
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import org.junit.jupiter.api.BeforeAll;
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import org.junit.jupiter.api.Disabled;
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import org.junit.jupiter.api.Test;
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import com.fasterxml.jackson.databind.ObjectMapper;
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import eu.dnetlib.dhp.common.collection.models.CSVProgramme;
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import eu.dnetlib.dhp.common.collection.models.CSVProject;
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import eu.dnetlib.dhp.common.collection.models.DOAJModel;
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import eu.dnetlib.dhp.common.collection.models.UnibiGoldModel;
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public class GetCSVTest {
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private static String workingDir;
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private static LocalFileSystem fs;
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@BeforeAll
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public static void beforeAll() throws IOException {
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workingDir = Files
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.createTempDirectory(GetCSVTest.class.getSimpleName())
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.toString();
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fs = FileSystem.getLocal(new Configuration());
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}
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@Disabled
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@Test
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void getProgrammeFileTest() throws Exception {
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String fileURL = "https://cordis.europa.eu/data/reference/cordisref-h2020programmes.csv";
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GetCSV
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.getCsv(
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fs, new BufferedReader(
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new InputStreamReader(new HttpConnector2().getInputSourceAsStream(fileURL))),
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workingDir + "/programme",
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"eu.dnetlib.dhp.common.collection.models.CSVProgramme", ';');
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BufferedReader in = new BufferedReader(new InputStreamReader(fs.open(new Path(workingDir + "/programme"))));
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String line;
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int count = 0;
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while ((line = in.readLine()) != null) {
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CSVProgramme csvp = new ObjectMapper().readValue(line, CSVProgramme.class);
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if (count == 0) {
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Assertions.assertTrue(csvp.getCode().equals("H2020-EU.5.f."));
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Assertions
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.assertTrue(
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csvp
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.getTitle()
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.startsWith(
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"Develop the governance for the advancement of responsible research and innovation by all stakeholders"));
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Assertions
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.assertTrue(csvp.getTitle().endsWith("promote an ethics framework for research and innovation"));
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Assertions.assertTrue(csvp.getShortTitle().equals(""));
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Assertions.assertTrue(csvp.getLanguage().equals("en"));
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}
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if (count == 28) {
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Assertions.assertTrue(csvp.getCode().equals("H2020-EU.3.5.4."));
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Assertions
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.assertTrue(
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csvp
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.getTitle()
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.equals(
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"Grundlagen für den Übergang zu einer umweltfreundlichen Wirtschaft und Gesellschaft durch Öko-Innovation"));
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Assertions
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.assertTrue(csvp.getShortTitle().equals("A green economy and society through eco-innovation"));
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Assertions.assertTrue(csvp.getLanguage().equals("de"));
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}
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if (count == 229) {
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Assertions.assertTrue(csvp.getCode().equals("H2020-EU.3.2."));
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Assertions
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.assertTrue(
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csvp
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.getTitle()
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.equals(
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"SOCIETAL CHALLENGES - Food security, sustainable agriculture and forestry, marine, maritime and inland water research, and the bioeconomy"));
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Assertions
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.assertTrue(
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csvp.getShortTitle().equals("Food, agriculture, forestry, marine research and bioeconomy"));
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Assertions.assertTrue(csvp.getLanguage().equals("en"));
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}
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Assertions.assertTrue(csvp.getCode() != null);
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Assertions.assertTrue(csvp.getCode().startsWith("H2020"));
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count += 1;
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}
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Assertions.assertEquals(767, count);
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}
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@Disabled
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@Test
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void getProjectFileTest() throws IOException, CollectorException, ClassNotFoundException {
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String fileURL = "https://cordis.europa.eu/data/cordis-h2020projects.csv";
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// String fileURL = "/Users/miriam.baglioni/Downloads/cordis-h2020projects.csv";
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GetCSV
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.getCsv(
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fs,
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new BufferedReader(new InputStreamReader(new HttpConnector2().getInputSourceAsStream(fileURL)))
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// new BufferedReader(new FileReader(fileURL))
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, workingDir + "/projects",
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"eu.dnetlib.dhp.common.collection.models.CSVProject", ';');
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BufferedReader in = new BufferedReader(new InputStreamReader(fs.open(new Path(workingDir + "/projects"))));
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String line;
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int count = 0;
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while ((line = in.readLine()) != null) {
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CSVProject csvp = new ObjectMapper().readValue(line, CSVProject.class);
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if (count == 0) {
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Assertions.assertTrue(csvp.getId().equals("771736"));
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Assertions.assertTrue(csvp.getProgramme().equals("H2020-EU.1.1."));
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Assertions.assertTrue(csvp.getTopics().equals("ERC-2017-COG"));
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}
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if (count == 22882) {
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Assertions.assertTrue(csvp.getId().equals("752903"));
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Assertions.assertTrue(csvp.getProgramme().equals("H2020-EU.1.3.2."));
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Assertions.assertTrue(csvp.getTopics().equals("MSCA-IF-2016"));
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}
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if (count == 223023) {
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Assertions.assertTrue(csvp.getId().equals("861952"));
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Assertions.assertTrue(csvp.getProgramme().equals("H2020-EU.4.e."));
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Assertions.assertTrue(csvp.getTopics().equals("SGA-SEWP-COST-2019"));
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}
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Assertions.assertTrue(csvp.getId() != null);
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Assertions.assertTrue(csvp.getProgramme().startsWith("H2020"));
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count += 1;
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}
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Assertions.assertEquals(34957, count);
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}
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@Disabled
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@Test
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void getUnibiFileTest() throws CollectorException, IOException, ClassNotFoundException {
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String fileURL = "https://pub.uni-bielefeld.de/download/2944717/2944718/issn_gold_oa_version_4.csv";
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GetCSV
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.getCsv(
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fs, new BufferedReader(
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new InputStreamReader(new HttpConnector2().getInputSourceAsStream(fileURL))),
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workingDir + "/programme",
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"eu.dnetlib.dhp.common.collection.models.UnibiGoldModel", ',');
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BufferedReader in = new BufferedReader(new InputStreamReader(fs.open(new Path(workingDir + "/programme"))));
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String line;
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int count = 0;
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while ((line = in.readLine()) != null) {
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UnibiGoldModel unibi = new ObjectMapper().readValue(line, UnibiGoldModel.class);
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if (count == 0) {
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Assertions.assertTrue(unibi.getIssn().equals("0001-625X"));
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Assertions.assertTrue(unibi.getIssn_l().equals("0001-625X"));
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Assertions.assertTrue(unibi.getTitle().equals("Acta Mycologica"));
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}
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if (count == 43158) {
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Assertions.assertTrue(unibi.getIssn().equals("2088-6330"));
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Assertions.assertTrue(unibi.getIssn_l().equals("2088-6330"));
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Assertions.assertTrue(unibi.getTitle().equals("Religió: Jurnal Studi Agama-agama"));
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}
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if (count == 67027) {
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Assertions.assertTrue(unibi.getIssn().equals("2658-7068"));
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Assertions.assertTrue(unibi.getIssn_l().equals("2308-2488"));
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Assertions.assertTrue(unibi.getTitle().equals("Istoriko-èkonomičeskie issledovaniâ."));
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}
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count += 1;
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}
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Assertions.assertEquals(67028, count);
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}
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@Disabled
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@Test
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void getDoajFileTest() throws CollectorException, IOException, ClassNotFoundException {
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String fileURL = "https://doaj.org/csv";
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try (BufferedReader in = new BufferedReader(
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new InputStreamReader(new HttpConnector2().getInputSourceAsStream(fileURL)))) {
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try (PrintWriter writer = new PrintWriter(new BufferedWriter(new FileWriter("/tmp/DOAJ_1.csv")))) {
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String line;
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while ((line = in.readLine()) != null) {
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writer.println(line.replace("\\\"", "\""));
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}
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}
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}
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GetCSV
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.getCsv(
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fs, new BufferedReader(
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new FileReader("/tmp/DOAJ_1.csv")),
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workingDir + "/programme",
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"eu.dnetlib.dhp.common.collection.models.DOAJModel", ',');
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BufferedReader in = new BufferedReader(new InputStreamReader(fs.open(new Path(workingDir + "/programme"))));
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String line;
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int count = 0;
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while ((line = in.readLine()) != null) {
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DOAJModel doaj = new ObjectMapper().readValue(line, DOAJModel.class);
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if (count == 0) {
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Assertions.assertTrue(doaj.getIssn().equals("0001-3765"));
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Assertions.assertTrue(doaj.getEissn().equals("1678-2690"));
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Assertions.assertTrue(doaj.getJournalTitle().equals("Anais da Academia Brasileira de Ciências"));
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}
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if (count == 7902) {
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Assertions.assertTrue(doaj.getIssn().equals(""));
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Assertions.assertTrue(doaj.getEissn().equals("2055-7159"));
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Assertions.assertTrue(doaj.getJournalTitle().equals("BJR|case reports"));
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}
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if (count == 16703) {
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Assertions.assertTrue(doaj.getIssn().equals(""));
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Assertions.assertTrue(doaj.getEissn().equals("2788-6298"));
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Assertions
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.assertTrue(doaj.getJournalTitle().equals("Teacher Education through Flexible Learning in Africa"));
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}
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count += 1;
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}
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Assertions.assertEquals(16709, count);
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}
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}
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