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dnet-hadoop
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3612 Commits

Author SHA1 Message Date
Enrico Ottonello 9a0ca0296a added mobidb constants configuration and test 2022-04-07 13:17:50 +02:00
Enrico Ottonello d0df02062c raised runtimeexception on record without title or url 2022-04-06 13:19:58 +02:00
Enrico Ottonello 7fc5b97871 skipped record without title or url 2022-04-06 13:08:48 +02:00
Enrico Ottonello a203c33693 added disprot constants configuration 2022-04-06 12:48:24 +02:00
Enrico Ottonello afb46d71f7 added subjects to disprot output 2022-04-06 12:22:10 +02:00
Enrico Ottonello 98178b3165 custom deserializer for property value type working for both ped and disprot 2022-04-05 10:47:17 +02:00
Enrico Ottonello f11dfc51f7 fix resolved url format, added alternate identifier from original pid 2022-03-22 16:39:21 +01:00
Enrico Ottonello afe84c4244 added subjects to oaf generation 2022-03-18 18:10:39 +01:00
Enrico Ottonello db831e6f43 removed dynamic allocation on wf 2022-03-18 17:43:53 +01:00
Enrico Ottonello 861f2a3306 added titles merging title page and protein identifier 2022-03-18 14:51:57 +01:00
Enrico Ottonello f43bfdb594 added subjects 2022-03-17 19:24:07 +01:00
Enrico Ottonello 3ef5eec3a6 added bmuse and rdfconverter modules - added repository for bmuse jars 2022-03-16 12:07:36 +01:00
Enrico Ottonello 41284ec2f9 retrieving vocabulary terms from nquads 2022-03-16 11:26:50 +01:00
Enrico Ottonello e53a606afc added date of collection, resource type as workflow parameter 2022-03-15 17:36:48 +01:00
Enrico Ottonello bd37f14941 added working ocean configuration 2022-03-03 14:38:21 +01:00
Enrico Ottonello 29ee1b9d82 added datasource key to workflow parameter to properly choose collected from and id values 2022-03-03 12:31:29 +01:00
Enrico Ottonello e57216a1fa added oozie workflow to generate bioschema dataset on hdfs 2022-03-02 16:58:10 +01:00
Enrico Ottonello f28d7e3b9d added spark dataset creation 2022-03-02 12:12:37 +01:00
Enrico Ottonello 8f281846a4 update test file 2022-02-28 13:37:53 +01:00
Enrico Ottonello f833de8a75 added relatedIdentifierType, fix IsCitedBy value 2022-02-28 13:37:28 +01:00
Enrico Ottonello 7f9636ef00 added alternateIdentifiers to oaf 2022-02-25 14:42:08 +01:00
Enrico Ottonello 2f5caef77b resolution of generated relations url to uniprot and pubmed datasources 2022-02-24 16:59:50 +01:00
Enrico Ottonello 4975278558 added modules for downloading data with bmuse and converting to datacite json format 2022-02-22 12:53:19 +01:00
Enrico Ottonello 2bc79c50f8 mapping bioschema to oaf 2022-02-22 11:46:29 +01:00
Enrico Ottonello 446f81ee60 wf to generate oaf from bioschema json datacite 2022-02-22 11:42:57 +01:00
Claudio Atzori 5226d0a100 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2022-02-18 15:21:07 +01:00
Claudio Atzori 99f5b14469 [graph raw] invisible records stored among the raw graph rather than the claimed subgraph 2022-02-18 15:20:57 +01:00
Claudio Atzori 401dd38074 code formatting 2022-02-18 15:19:15 +01:00
Claudio Atzori cf8443780e added processingchargeamount to the result view 2022-02-18 15:17:48 +01:00
Sandro La Bruzzo 891781ee3f Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2022-02-18 11:11:32 +01:00
Sandro La Bruzzo d3f03abd51 fixed wrong json path 2022-02-18 11:11:17 +01:00
Claudio Atzori 56e048ef21 Merge pull request 'added hierarchy rel in ROR actionset' (#153) from hierarchical_orgs_relations into beta 
Reviewed-on: D-Net/dnet-hadoop#153
 2022-02-17 10:31:56 +01:00
Claudio Atzori 89c7313fc5 Merge branch 'beta' into hierarchical_orgs_relations 2022-02-17 10:30:04 +01:00
Sandro La Bruzzo 3aa2020b24 added script to regenerate hostedBy Map following instruction defined on ticket #7539 
updated hosted By Map
 2022-02-15 11:05:27 +01:00
Miriam Baglioni 90e197a563 Merge pull request '[OpenCitation] changed the name of destination folders' (#195) from openCitations into beta 
Reviewed-on: D-Net/dnet-hadoop#195
 2022-02-14 15:52:10 +01:00
Miriam Baglioni be64055cfe [OpenCitation] changed the name of destination folders 2022-02-14 15:49:44 +01:00
Miriam Baglioni a1013e62d4 Merge pull request 'openCitations' (#194) from openCitations into beta 
Reviewed-on: D-Net/dnet-hadoop#194
 2022-02-14 14:58:28 +01:00
Miriam Baglioni 1490867cc7 [OpenCitation] cleaning of the COCI model 2022-02-14 14:52:12 +01:00
Miriam Baglioni c191080965 mergin with branch beta 2022-02-14 14:49:39 +01:00
Alessia Bardi 6158170334 testing delegated authority and bumped dep to schemas 2022-02-11 18:05:18 +01:00
Alessia Bardi 600ede1798 serialisation of APCs int he XML records 2022-02-11 11:00:20 +01:00
Miriam Baglioni 5c4043dba8 [OpenCitation] refactoring 2022-02-08 16:23:05 +01:00
Miriam Baglioni 759ed519f2 [OpenCitation] added logic to avoid the genration of self citations relations 2022-02-08 16:15:34 +01:00
Miriam Baglioni b071f8e415 [OpenCitation] change to extract in json format each folder just onece 2022-02-08 15:37:28 +01:00
Miriam Baglioni fbc28ee8c3 [OpenCitation] change the integration logic to consider dois with commas inside 2022-02-07 18:32:08 +01:00
Miriam Baglioni 1f8302dc37 Merge pull request '[stats-wf]fixed yet another typo' (#193) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#193
 2022-02-07 11:19:26 +01:00
Antonis Lempesis 5f762cbd09 fixed yet another typo 2022-02-07 12:09:12 +02:00
Alessia Bardi b04ecfcf13 Merge pull request 'extendResult' (#192) from extendResult into beta 
Reviewed-on: D-Net/dnet-hadoop#192
 2022-02-04 16:43:58 +01:00
Alessia Bardi ac8b8f224f Merge branch 'beta' into extendResult 2022-02-04 16:43:27 +01:00
Miriam Baglioni 9fd2ef468e [APC at the result level] changed dependecy in external pom 2022-02-04 16:40:32 +01:00