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added mobidb constants configuration and test

This commit is contained in:
Enrico Ottonello 2022-04-07 13:17:50 +02:00
parent d0df02062c
commit 9a0ca0296a
7 changed files with 238 additions and 9 deletions
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6
dhp-workflows/dhp-aggregation/src/main/resources/eu/dnetlib/dhp/bioschema/oozie_app/workflow.xml
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@ -2,13 +2,13 @@
<parameters>
<property>
<name>mainPath</name>
<value>/data/bioschema/ped</value>
<value>/data/bioschema/mobidb</value>
<description>the working path of Bioschema stores</description>
</property>
<property>
<name>datasourceKey</name>
<value>ped</value>
<description>the key that identifies the datasource (eg ped, disprot)</description>
<value>mobidb</value>
<description>the key that identifies the datasource (eg ped, disprot, mobidb)</description>
</property>
<property>
<name>profile</name>

22
dhp-workflows/dhp-aggregation/src/main/scala/eu/dnetlib/dhp/bioschema/BioschemaModelConstants.scala
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@ -75,13 +75,16 @@ object BioschemaModelConstants {
val PED_PREFIX: String = "ped_________"
val DISPROT_PREFIX: String = "disprot_____"
val MOBIDB_PREFIX: String = "mobidb______"
val resolvedURLPattern: Map[String, String] = Map(
"https://identifiers.org/pubmed:" -> "pubmed",
"http://purl.uniprot.org/uniprot/" -> "uniprot",
"https://identifiers.org/uniprot:" -> "uniprot",
"https://identifiers.org/disprot:" -> "disprot"
"https://identifiers.org/disprot:" -> "disprot",
"https://identifiers.org/mobidb:" -> "mobidb"
)
//TODO create DatasourceId and update those value
val collectedFromMap: Map[String, KeyValue] = {
val PEDCollectedFrom: KeyValue = OafMapperUtils.keyValue(
@ -89,21 +92,30 @@ object BioschemaModelConstants {
"Protein Ensemble Database"
)
PEDCollectedFrom.setDataInfo(DATA_INFO)
val DISPROTCollectedFrom: KeyValue = OafMapperUtils.keyValue(
"10|disprot_____::disprotDatasourceId",
"DisProt, the database of intrinsically disordered proteins"
)
DISPROTCollectedFrom.setDataInfo(DATA_INFO)
val MOBIDBCollectedFrom: KeyValue = OafMapperUtils.keyValue(
"10|mobidb______::mobidbDatasourceId",
"MobiDB, a database of protein disorder and mobility annotations"
)
MOBIDBCollectedFrom.setDataInfo(DATA_INFO)
Map(
"ped" -> PEDCollectedFrom,
"disprot" -> DISPROTCollectedFrom
"ped" -> PEDCollectedFrom,
"disprot" -> DISPROTCollectedFrom,
"mobidb" -> MOBIDBCollectedFrom
)
}
val datasourceKeyPrefix: Map[String, String] = Map(
"ped" -> PED_PREFIX,
"disprot" -> DISPROT_PREFIX
"ped" -> PED_PREFIX,
"disprot" -> DISPROT_PREFIX,
"mobidb" -> MOBIDB_PREFIX
)
val REL_TYPE_VALUE: String = "resultResult"

75
dhp-workflows/dhp-aggregation/src/test/resources/eu/dnetlib/dhp/bioschema/mobidb_record.json Normal file
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@ -0,0 +1,75 @@
{
"id": "Q9UPN6",
"types": {
"resourceType": "Protein",
"resourceTypeGeneral": "Dataset"
},
"creators": [],
"identifiers": [
{
"identifier": "https://mobidb.org/Q9UPN6",
"identifierType": "URL"
}
],
"relatedIdentifiers": [
{
"relationType": "IsIdenticalTo",
"relatedIdentifier": "http://purl.uniprot.org/uniprot/Q9UPN6",
"relatedIdentifierType": "URL"
}
],
"alternateIdentifiers": [
{
"alternateIdentifier": "https://identifiers.org/mobidb:Q9UPN6"
}
],
"descriptions": [],
"titles": [
{
"title": "Q9UPN6 - SR-related and CTD-associated factor 8 "
}
],
"dates": [
{
"date": "2021-12-06T14:49:15",
"dateType": "Collected"
}
],
"subjects": [
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
},
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
},
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
},
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
},
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
},
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
},
{
"schemeURI": "https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076",
"value": "Disorder",
"subjectScheme": "IDPO:00076"
}
]
}

13
dhp-workflows/dhp-aggregation/src/test/scala/eu/dnetlib/dhp/bioschema/BioschemaDataciteToOAFTest.scala
View File

@ -86,4 +86,17 @@ class BioschemaDataciteToOAFTest {
println("----------------------------")
})
}
@Test
def testMOBIDBMapping(): Unit = {
val record = Source
.fromInputStream(getClass.getResourceAsStream("/eu/dnetlib/dhp/bioschema/mobidb_record.json"))
.mkString
val mapper = new ObjectMapper().enable(SerializationFeature.INDENT_OUTPUT)
val res: List[Oaf] = BioschemaToOAFTransformation.generateOAF(record, true, "mobidb", "protein")
res.foreach(r => {
println(mapper.writeValueAsString(r))
println("----------------------------")
})
}
}

2
dhp-workflows/dhp-rdfconverter/src/main/resources/eu/dnetlib/dhp/rdfconverter/bioschema/oozie_app/workflow.xml
View File

@ -2,7 +2,7 @@
<parameters>
<property>
<name>workingPath</name>
<value>/data/bioschema/ped/</value>
<value>/data/bioschema/mobidb/</value>
<description>the working path</description>
</property>
<property>

11
dhp-workflows/dhp-rdfconverter/src/test/java/eu/dnetlib/dhp/rdfconverter/bioschema/ConverterTest.java
View File

@ -36,4 +36,15 @@ public class ConverterTest {
logger.info("JSON DATACITE >> " + r);
});
}
@Test
public void mobidbToDataciteTest() throws Exception {
InputStream is = ConverterTest.class.getResourceAsStream("/eu/dnetlib/dhp/rdfconverter/bioschema/mobidb.nq");
String nq = IOUtils.toString(is);
RDFConverter converter = new RDFConverter();
ArrayList<String> results = converter.nQuadsFile2DataciteJson(nq, "Protein");
results.stream().forEach(r -> {
logger.info("JSON DATACITE >> " + r);
});
}
}

118
dhp-workflows/dhp-rdfconverter/src/test/resources/eu/dnetlib/dhp/rdfconverter/bioschema/mobidb.nq Normal file
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@ -0,0 +1,118 @@
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> <http://purl.org/pav/retrievedFrom> <https://mobidb.org/Q9UPN6> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> <http://purl.org/pav/retrievedOn> "2021-12-06T14:49:15"^^<http://www.w3.org/2001/XMLSchema#dateTime> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> <http://purl.org/pav/createdWith> <https://github.com/HW-SWeL/BMUSE/releases/tag/0.5.2> .
<https://mobidb.org/Q9UPN6> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/Protein> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <http://purl.org/dc/terms/conformsTo> <https://bioschemas.org/profiles/Protein/0.11-RELEASE> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasBioPolymerSequence> "MEAVKTFNSELYSLNDYKPPISKAKMTQITKAAIKAIKFYKHVVQSVEKFIQKCKPEYKVPGLYVIDSIVRQSRHQFGQEKDVFAPRFSNNIISTFQNLYRCPGDDKSKIVRVLNLWQKNNVFKSEIIQPLLDMAAGIPPPVVTPVLASTTTAMSNTPGTPVTPVTPANVVQGLPDPWVSQITNTDTLAAVAQILQSPQGQQLQQLIQTLQIQQQKPQPSILQALDAGLVVQLQALTAQLTAAAAAANTLTPLEQGVSFNKKLMDRFDFGEDSEHSEEPKKEIPASQLSHVSESVNNSIFHQIAEQLQQQNLEHLRQQLLEQQQPQKATPQDSQEGTFGSEHSASPSQGSSQQHFLEPEVNLDDSIDIQQQDMDIDEGQDGVEEEVFEQEAKKVAVRSRSRTHSRSRSRSPRKRRSRSRSGSRKRKHRKRSRSRSRERKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWVGQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYVCMVHRQDAFRALQKLSSGSYKIGSKVIKIAWALNKGVKTEYKQFWDVDLGVTYIPWEKVKVDDLEGFAEGGMIDQETVNTEWETVKSSEPVKETVQTTQSPTPVEKETVVTTQAEVFPPPVAMLQIPVAPAVPTVSLVPPAFPVSMPVPPPGFSPIPPPPFLRASFNPSQPPPGFMPPPVPPPVVPPPTIPPVVPTSLVQPSLSMTPETVKDVGFGSLVIPGGSVASNLATSALPAGNVFNAPTKQAEPEEKVPHLIDHQISSGENTRSVIPNDISSNAAILGGQPPNVTSNSGILGVQRPNVSSNSEILGVRPSNVSSSSGIIAAQPPNILNNSGILGIQPPSVSNSSGLLGVLPPNIPNNSGLVGVQPPNVPNTPGLLGTQPPAGPQNLPPLSIPNQRMPTMPMLDIRPGLIPQAPGPRFPLIQPGIPPQRGIPPPSVLDSALHPPPRGPFPPGDIFSQPERPFLAPGRQSVDNVTNPEKRIPLGNDNIQQEGDRDYRFPPIETRESISRPPPVDVRDVVGRPIDPREGPGRPPLDGRDHFGRPPVDIRENLVRPGIDHLGRRDHFGFNPEKPWGHRGDFDEREHRVLPVYGGPKGLHEERGRFRSGNYRFDPRSGPWNRGFGQEVHRDFDDRRRPWERQRDRDDRDFDFCREMNGNRLGRDRIQNTWVPPPHARVFDYFEGATSQRKGDNVPQVNGENTERHAQPPPIPVQNDPELYEKLTSSNEINKEKSDTVADIESEPVVESTETEGT" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-content-mobidb_lite> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.270_289> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.322_354> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.384_468> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.808_827> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.899_918> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.945_1064> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/hasSequenceAnnotation> <https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.1198_1271> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/identifier> "https://identifiers.org/mobidb:Q9UPN6" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/includedInDataset> "https://mobidb.org/#2020-09" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/name> "SR-related and CTD-associated factor 8" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/sameAs> <http://purl.uniprot.org/uniprot/Q9UPN6> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <https://schema.org/taxonomicRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/profiles/Protein/0.11-RELEASE> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/CreativeWork> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-content-mobidb_lite> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-content-mobidb_lite> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1018653369> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-content-mobidb_lite> <https://schema.org/description> "Protein disorder content predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-content-mobidb_lite> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1799426988> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1018653369> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1018653369> <https://schema.org/name> "Protein disorder content" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1018653369> <https://schema.org/propertyID> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00499> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1018653369> <https://schema.org/value> "2.93E-1" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1799426988> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1799426988> <https://schema.org/rangeEnd> "1271" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1799426988> <https://schema.org/rangeStart> "1" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.270_289> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.270_289> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1828683> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.270_289> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.270_289> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/432948463> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1828683> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1828683> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1828683> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTerm> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://schema.org/inDefinedTermSet> <https://disprot.org/assets/data/IDPO_v0.2.owl> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://schema.org/name> "Disorder" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://schema.org/termCode> "IDPO:00076" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://disprot.org/assets/data/IDPO_v0.2.owl> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTermSet> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://disprot.org/assets/data/IDPO_v0.2.owl> <https://schema.org/name> "IDP ontology" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/432948463> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/432948463> <https://schema.org/rangeEnd> "289" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/432948463> <https://schema.org/rangeStart> "270" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.322_354> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.322_354> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/75870383> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.322_354> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.322_354> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/985831280> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/75870383> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/75870383> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/75870383> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/985831280> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/985831280> <https://schema.org/rangeEnd> "354" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/985831280> <https://schema.org/rangeStart> "322" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.384_468> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.384_468> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/2027294569> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.384_468> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.384_468> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1332124339> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/2027294569> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/2027294569> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/2027294569> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1332124339> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1332124339> <https://schema.org/rangeEnd> "468" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1332124339> <https://schema.org/rangeStart> "384" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.808_827> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.808_827> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1437016135> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.808_827> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.808_827> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/839471977> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1437016135> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1437016135> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1437016135> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/839471977> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/839471977> <https://schema.org/rangeEnd> "827" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/839471977> <https://schema.org/rangeStart> "808" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.899_918> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.899_918> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/144111614> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.899_918> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.899_918> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/781835543> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/144111614> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/144111614> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/144111614> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/781835543> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/781835543> <https://schema.org/rangeEnd> "918" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
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<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.945_1064> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.945_1064> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/902536730> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.945_1064> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.945_1064> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/518954157> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/902536730> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/902536730> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/902536730> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/518954157> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/518954157> <https://schema.org/rangeEnd> "1064" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
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<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.1198_1271> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceAnnotation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.1198_1271> <https://schema.org/additionalProperty> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/322445788> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.1198_1271> <https://schema.org/description> "Protein disordered region predicted by MobiDB-lite" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6#prediction-disorder-mobidb_lite.1198_1271> <https://schema.org/sequenceLocation> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/5118922> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/322445788> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/PropertyValue> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/322445788> <https://schema.org/name> "Term" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/322445788> <https://schema.org/value> <https://disprot.org/assets/data/IDPO_v0.2.owl#IDPO:00076> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/5118922> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/SequenceRange> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
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<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTerm> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://schema.org/inDefinedTermSet> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/569363713> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://schema.org/sameAs> <http://purl.uniprot.org/taxonomy/9606> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://schema.org/sameAs> <https://identifiers.org/taxonomy:9606> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://schema.org/sameAs> <http://purl.obolibrary.org/obo/NCBITaxon_9606> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://schema.org/termCode> "9606" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/1444334161> <https://schema.org/url> <http://purl.bioontology.org/ontology/NCBITAXON/9606> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/569363713> <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <https://schema.org/DefinedTermSet> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/569363713> <https://schema.org/name> "NCBI taxon" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0/mobidb.org/Q9UPN6/569363713> <https://schema.org/url> <https://bioportal.bioontology.org/ontologies/NCBITAXON> <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .
<https://mobidb.org/Q9UPN6> <http://purl.org/dc/terms/title> "MobiDB" <https://bioschemas.org/crawl/v1/mobidb/Q9UPN6/20211206/0> .