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4666 Commits

Author SHA1 Message Date
Miriam Baglioni 3d6be20989 changes to use the API instead of the IS the get the information for the communities to be used during bulktagging and context propagation 2023-10-09 14:26:33 +02:00
Claudio Atzori f344ad76d0 Merge pull request 'extended existing code to import of POCI from open citation' (#340) from importpoci into beta 
Reviewed-on: #340
 2023-10-03 10:52:11 +02:00
Claudio Atzori 5919e488dd Merge branch 'beta' into importpoci 2023-10-03 10:43:53 +02:00
Miriam Baglioni d7fccdc64b fixed paths in wf to match the req of the pathname 2023-10-02 14:10:57 +02:00
Miriam Baglioni 9898470b0e Addressing comments in #340\#issuecomment-10592 2023-10-02 12:54:16 +02:00
Giambattista Bloisi c412dc162b Fix bug in conversion from dedup json model to Spark Dataset of Rows: list of strings contained the json escaped representation of the value instead of the plain value, this caused instanceTypeMatch failures because of the leading and trailing double quotes 2023-10-02 11:34:51 +02:00
Claudio Atzori 5d09b7db8b Merge pull request 'SparkPropagateRelation relations do not propagate deletedByInference and invisible' (#333) from consistency_keep_mergerels into beta 
Reviewed-on: #333
 2023-10-02 11:27:57 +02:00
Claudio Atzori 7b403a920f Merge branch 'beta' into consistency_keep_mergerels 2023-10-02 11:26:00 +02:00
Claudio Atzori dc86018a5f Merge branch 'merge_entities_job' into beta 2023-10-02 11:24:48 +02:00
Giambattista Bloisi 3c47920c78 Use asScala to convert java List to Scala Sequence 2023-10-02 11:04:47 +02:00
Claudio Atzori 7f244d9a7a code formatting 2023-10-02 11:04:36 +02:00
Giambattista Bloisi e239b81740 Fix defect #8997: GenerateEventsJob is generating huge amounts of logs because broker entity similarity calculation consistently failed 2023-10-02 11:04:18 +02:00
Miriam Baglioni e84f5b5e64 extended existing codo to accomodate import of POCI from open citation 2023-10-02 09:25:16 +02:00
Alessia Bardi 0935d7757c Use v5 of the UNIBI Gold ISSN list in test 2023-09-20 15:41:35 +02:00
Alessia Bardi cc7204a089 tests for d4science catalog 2023-09-20 15:38:32 +02:00
Sandro La Bruzzo 76476cdfb6 Added maven repo for dependencies that are not in maven central 2023-09-20 10:33:14 +02:00
Serafeim Chatzopoulos 395a4af020 Run CC and RAM sequentieally in dhp-impact-indicators WF 2023-09-13 08:59:40 +02:00
Claudio Atzori 8a6892cc63 [graph dedup] consistency wf should not remove the relations while dispatching the entities 2023-09-12 21:27:05 +02:00
Claudio Atzori 4786aa0e09 added Archive ouverte UNIGE (ETHZ.UNIGENF, opendoar____::1400) to the Datacite hostedBy_map 2023-09-07 11:21:07 +02:00
Claudio Atzori 9f5d16624c Merge pull request '[graph raw] datainfo.invisible set as true only for entities' (#336) from invisible_relations into beta 
Reviewed-on: #336
 2023-09-04 16:14:47 +02:00
Claudio Atzori adec6692ca Merge branch 'beta' into invisible_relations 2023-09-04 16:13:06 +02:00
Claudio Atzori 15666e86a8 added collectedfrom to the affiliation relations imported from Crossref 2023-09-04 15:56:06 +02:00
Claudio Atzori 7d6bd4f20b Merge pull request 'Fix import of affiliations relations from Crossref' (#335) from 8876_fix_crossref_affiliation_relations_import into beta 
Reviewed-on: #335
 2023-09-04 15:19:58 +02:00
Claudio Atzori 5b06c9d06f [graph raw] datainfo.invisible set as true only for entities 2023-09-04 15:15:24 +02:00
Serafeim Chatzopoulos 7de0164c26 Fix import of affiliations relations from Crossref 2023-09-04 16:04:41 +03:00
Giambattista Bloisi 2caaaec42d Include SparkCleanRelation logic in SparkPropagateRelation 
SparkPropagateRelation includes merge relations
Revised tests for SparkPropagateRelation
 2023-09-04 11:33:20 +02:00
Giambattista Bloisi 6cc7d8ca7b GroupEntities and DispatchEntites are now merged in GroupEntitiesSparkJob 2023-08-30 10:43:31 +02:00
Claudio Atzori 488d9a1cea Merge pull request 'Add sparkExecutorMemoryOverhead workflow config to set off-heap memory for Spark actions. If not explicitly set it is defaulted to 1Gb' (#331) from consistencywf_memoryoverhead_conf into beta 
Reviewed-on: #331
 2023-08-29 16:31:36 +02:00
Giambattista Bloisi 6b1c05d118 Add sparkExecutorMemoryOverhead workflow config to set off-heap memory for Spark actions. If not explicitly set it is defaulted to 1Gb 2023-08-29 16:04:19 +02:00
Claudio Atzori bf35280ea6 code formatting 2023-08-29 11:11:00 +02:00
Claudio Atzori 0515d81c7c Merge pull request 'Rewrite SparkPropagateRelation exploiting Dataframe API' (#330) from propagate_relation_rewrite into beta 
Reviewed-on: #330
 2023-08-29 10:47:14 +02:00
Claudio Atzori 58665a246c Merge branch 'beta' into propagate_relation_rewrite 2023-08-29 10:47:02 +02:00
Claudio Atzori f437be80ad [impact indicators] adjusted paths in the bip ranker wf parameters 2023-08-29 09:03:03 +02:00
Giambattista Bloisi d012aec0b3 Revert PropagateRelation's argument name from outputPath to graphOutputPath in consistency workflow (#8964) 2023-08-28 22:44:54 +02:00
Giambattista Bloisi a860e19423 Fix ensure all relations are written out, not only those managed by dedup 2023-08-28 15:36:02 +02:00
Giambattista Bloisi 0d7b2bf83d Rewrite SparkPropagateRelation exploiting Dataframe API 2023-08-28 10:34:54 +02:00
Miriam Baglioni 9c8b41475a Merge pull request '8172_impact_indicators_workflow' (#284) from 8172_impact_indicators_workflow into beta 
Reviewed-on: #284
 2023-08-14 15:50:48 +02:00
Serafeim Chatzopoulos 97c1ba8918 Merge actionsets of results and projects 2023-08-11 15:56:53 +03:00
Miriam Baglioni 35b8deb2c6 Merge pull request 'DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag' (#329) from dispatch_filter_invisible_entities into beta 
Reviewed-on: #329
 2023-08-10 12:56:18 +02:00
Giambattista Bloisi 95cd2b9b1e Make filterInvisible a mandatory parameter of DispathEntitiesSparkJob 
Make filterInvisible a mandatory parameter of both dedup/consistency and graph/group oozie workflows
 2023-08-10 11:53:48 +02:00
Giambattista Bloisi fab9920271 DispatchEntitiesSparkJob: manage all entity types together, support filtering by dataInfo.invisible flag 2023-08-09 15:41:43 +02:00
Miriam Baglioni c25ac21e5e Merge pull request 'graph cleaning, suggestions from ticket 8898' (#325) from cleaning_8898 into beta 
Reviewed-on: #325
 2023-08-08 11:14:19 +02:00
Miriam Baglioni c334fe2438 Merge pull request 'Add a "CleanRelation" action after the PropagateRelation to filter out all relations that have been deleted by inference or that are pointing to dangling entities' (#328) from cleanup_relations_after_dedup into beta 
Reviewed-on: #328
 2023-08-08 09:49:12 +02:00
Miriam Baglioni 0e2f855807 Merge pull request 'Updates Promotion DBs' (#321) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #321
 2023-08-07 12:09:16 +02:00
Miriam Baglioni 18fbe52b20 Merge pull request 'Import affiliation relations from Crossref' (#320) from 8876 into beta 
Reviewed-on: #320
 2023-08-07 10:45:30 +02:00
Giambattista Bloisi 97b6d1dc45 Filter ids by dataInfo.deletedbyinference and DataInfo.invisible flags 
Filter relations also by dataInfo.invisible flag
 2023-08-07 10:24:11 +02:00
Giambattista Bloisi af49424b59 Add a "CleanRelation" action after the PropagateRelation to filter out all relations that have been deleyted by inference or that are pointing to dangling entities 2023-08-04 14:27:39 +02:00
Claudio Atzori b9dddbfe54 rule out records with NULL dataInfo, except for Relations 2023-07-31 17:53:54 +02:00
Claudio Atzori 11ffb9bd68 rule out records with NULL dataInfo 2023-07-31 12:35:33 +02:00
Serafeim Chatzopoulos 7cefe2665b Remove unnecessary classes 2023-07-28 19:14:39 +03:00