Miriam Baglioni
5011c4d11a
refactoring after compiletion
2023-12-20 15:57:26 +01:00
Miriam Baglioni
4740c808f7
-
2023-12-20 14:26:54 +01:00
Miriam Baglioni
d410ea8a41
added needed parameter
2023-12-19 12:15:01 +01:00
Miriam Baglioni
624f5f3f21
[Transformative Agreement] added check to verify the APC were paid byu the IReL funder
2023-12-18 15:28:19 +01:00
Miriam Baglioni
354e02e6a9
[Transformative Agreement] removed not needed class. Read directly the json and no need to pass from the csv
2023-12-18 15:20:27 +01:00
Miriam Baglioni
b00771c7cc
[Transformative Agreement] added code to extract relations from the transformative agreement file for the IE products got from OpenAPC
2023-12-18 15:12:44 +01:00
15fd93a2b6
uploaded input parameters on CreateBaseline WF
2023-12-18 12:21:55 +01:00
9d342a47da
updated the transformation Baseline workflow to include mdstore rollback/commit action
2023-12-18 11:48:57 +01:00
Miriam Baglioni
3eca5d2e1c
-
2023-12-18 09:55:27 +01:00
Miriam Baglioni
01ce0b9c76
[doiboost - preprocess] remove transition to orcid preparation from sequence of steps at the beginning of the workflow
2023-12-15 12:24:55 +01:00
Miriam Baglioni
0d8e496a63
-
2023-12-15 12:16:43 +01:00
Claudio Atzori
ff924215b8
[graph provision] added tests for new peerreviewed field
2023-12-12 11:21:30 +01:00
Claudio Atzori
7e8eff40c1
[graph provision] added tests for the new model fields
2023-12-12 08:54:15 +01:00
Miriam Baglioni
8752d275fa
removed not needed parameter
2023-12-09 15:24:45 +01:00
Miriam Baglioni
d4eedada71
adjusting workflow definition
2023-12-09 15:20:11 +01:00
Claudio Atzori
cb71a7936b
[graph cleaning] avoid stack overflow error when navigating Oaf objects declaring an Enum
2023-12-07 23:09:54 +01:00
Claudio Atzori
70eb1796b2
logging typo
2023-12-07 14:08:04 +01:00
Claudio Atzori
c381bacee0
[enrichment] passing the community API base URL
2023-12-07 14:07:11 +01:00
Miriam Baglioni
336fb31d87
[community_result_propagation] adjusting starting poit of workflow
2023-12-07 10:27:25 +01:00
Miriam Baglioni
c0cde53bf6
[bulktagging] setting first step of bulktaggin as the copy of the entities and relations not involved in the tagging'
2023-12-07 10:08:35 +01:00
Miriam Baglioni
616622d2bb
first version of the workflow single step
2023-12-07 09:59:52 +01:00
Claudio Atzori
259c69e446
[orcid enrichment] fixed workflow definition
2023-12-06 19:41:53 +01:00
Claudio Atzori
431c6bb08a
[dedup] added isLookupUrl to the graph consistency workflow definition, required now by the entity grouping phase
2023-12-06 11:06:46 +01:00
Claudio Atzori
321922772b
added serialization for the new fields imported for the Irish tender
2023-12-05 16:37:04 +01:00
Claudio Atzori
c5b7253130
[community_organization propagation] fixed workflow parameters
2023-12-05 09:13:33 +01:00
Claudio Atzori
3c3bdb8318
[bulktagging] fixed workflow parameters
2023-12-05 09:08:48 +01:00
Claudio Atzori
2a233a89aa
[graph grouping] added isLookupUrl to the workflow definition, passed to the grouping spark aciton
2023-12-03 13:32:52 +01:00
Claudio Atzori
178a14c491
code formatting
2023-12-03 13:31:58 +01:00
3caf6ff27e
Extracted the correct original type to pass to instanceTypeMapping in Crossref Mapping
2023-12-01 16:33:56 +01:00
Claudio Atzori
511a98dd80
fixed doiboost process workflow, removed references to the ProcessORCID step
2023-12-01 16:21:53 +01:00
Claudio Atzori
09d061e90b
Merge branch 'beta' into orcid_import
2023-12-01 15:05:35 +01:00
Claudio Atzori
93a700742a
Merge pull request 'Changes for tables and creation of the new indicator indi_is_result_accessible' ( #363 ) from antonis.lempesis/dnet-hadoop:beta into beta
...
Reviewed-on: #363
2023-12-01 15:05:23 +01:00
Claudio Atzori
0c3c9ea43d
Merge pull request 'StatsDB workflow to export actionsets about OA routes, diamond, and publicly-funded' ( #355 ) from dimitris.pierrakos/dnet-hadoop:beta into beta
...
Reviewed-on: #355
2023-12-01 15:03:56 +01:00
Claudio Atzori
33cb483c75
using objectSubType as originalType in Crossref2Oaf, code formatting
2023-12-01 15:03:05 +01:00
c9d995dde0
New institutions added
2023-12-01 15:44:35 +02:00
a397112cb8
Add new indicator
...
Add indi_pub_publicly_funded
2023-12-01 15:00:18 +02:00
76594ded23
Changes to indicators
...
Fixes on open access colours indicators
- indi_pub_green_oa
- indi_pub_gold_oa
- indi_pub_hybrid
- indi_pub_bronze_oa
- indi_pub_diamond
2023-12-01 13:38:19 +02:00
Claudio Atzori
622fafbd2e
Merge branch 'beta' into orcid_import
2023-12-01 12:28:14 +01:00
bf0fd27c36
Removed unused function
...
Applied PR Comment of Giambattista in the PR
2023-12-01 12:16:42 +01:00
48430a32a6
Update StatsAtomicActionsJob.java
...
Added indi_funded_result_with_fundref indicator
2023-12-01 11:35:01 +02:00
cdfb7588dd
code formatting
2023-11-30 15:31:42 +01:00
5e22b67b8a
Merge remote-tracking branch 'origin/beta' into orcid_import
2023-11-30 15:27:46 +01:00
f718caaac9
Added copy of the untouched entities of the graph
2023-11-30 14:51:00 +01:00
7b5e04f37e
removed Orcid intersection on DOIBoost
2023-11-30 14:36:50 +01:00
Claudio Atzori
6f10791e77
Merge branch 'beta' into propagationapi
2023-11-30 14:20:18 +01:00
Claudio Atzori
4e1aac2e2f
resolved conflict in pom.xml before applying the changes from [COAR based resource types & Irish tender] #350
2023-11-29 14:37:52 +01:00
86b5775e08
added vocabulary in instanceTypeMapping for
...
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
2023-11-29 13:15:43 +01:00
c96ff54b45
Merge remote-tracking branch 'origin/resource_types' into resource_types
2023-11-29 12:45:41 +01:00
af1c2634b3
added instanceTypeMapping original field in the mapping of
...
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
2023-11-29 12:45:30 +01:00
279100fa52
added test
2023-11-29 11:17:58 +01:00
59111713fa
added comment
2023-11-28 09:00:48 +01:00
6f4d0c05ea
Implemented Author MErger for ORCID that takes in account the case when name and surname are swapped
2023-11-28 08:43:56 +01:00
Miriam Baglioni
8eb70e6657
refactoring
2023-11-27 15:13:15 +01:00
Miriam Baglioni
e3cce9a5a0
mergin with branch beta
2023-11-27 15:10:55 +01:00
Miriam Baglioni
48e0427a23
changed the parameter from production to baseURL. Fixed issue in tagging configuration
2023-11-27 15:10:27 +01:00
34a4b3cbdf
Implemented ORCID Enrichment
2023-11-24 12:39:58 +01:00
359e81b7a6
Update StatsAtomicActionsJob.java
...
Bug fix for duplicate bronze checks
2023-11-23 10:48:55 +02:00
Claudio Atzori
2c77638bf5
Merge branch 'beta' into cleaning_8898
2023-11-22 14:00:10 +01:00
Claudio Atzori
745039ad5b
Merge branch 'beta' into 9117_pubmed_affiliations
2023-11-22 13:52:53 +01:00
Claudio Atzori
11a1207f9c
[graph cleaning] applying coar based vocabularies in bulk
2023-11-22 12:22:14 +01:00
a94a54a2d0
Changes for tables and creation of the new indicator indi_is_result_accessible
...
- Drop table statements for all tables to avoid duplicates in case of wf rerun
- Add pdfsaggregated step to create the indi_is_result_accessible table. This step is executed on the new impala cluster only, since the pdfaggregation_i is updated on this cluster.
2023-11-15 14:32:18 +02:00
Miriam Baglioni
eaf0a702de
-
2023-11-14 14:53:34 +01:00
6ce36b3e41
Implemented ORCID Workflow on DHP-Aggregation for retrieving ORCID DUMP and generating tables
2023-11-14 12:04:29 +01:00
d524e30866
Changes to actionsets
...
Resolve comments from
#355
2023-11-14 09:46:52 +02:00
Miriam Baglioni
5bc97615d5
-
2023-11-03 15:35:10 +01:00
Miriam Baglioni
7b1e34f159
refactoring
2023-11-03 15:30:01 +01:00
Miriam Baglioni
638ad9e74f
changing test for new implementation
2023-11-03 15:06:50 +01:00
Miriam Baglioni
edcb17ca98
refactoring and test
2023-11-03 13:01:14 +01:00
Miriam Baglioni
937ff6a7c7
-
2023-10-31 15:56:08 +01:00
Miriam Baglioni
a737dd47b6
removed not needed test class
2023-10-31 15:54:49 +01:00
Miriam Baglioni
c80b768af0
test for project propagation
2023-10-31 15:49:42 +01:00
Miriam Baglioni
e9a20fc8f6
mergin with branch beta
2023-10-31 14:36:03 +01:00
Claudio Atzori
262d7c581b
[graph cleaning] implemented further suggestions from https://support.openaire.eu/issues/8898
2023-10-31 14:34:10 +01:00
2090003ea9
Adjust tests to new WF input params
2023-10-26 13:47:06 -07:00
a82aaf57b2
Renaming input param for crossref input path
2023-10-25 12:05:02 -07:00
Claudio Atzori
b3a61ea955
Merge branch 'beta' into url_validation
2023-10-25 14:22:56 +02:00
89c4dfbaf4
StatsDB workflow to export actionsets about OA routes, diamond, and publicly-funded
...
A new oozie workflow capable to read from the stats db to produce a new actionSet for updating results with:
- green_oa ={true, false}
- openAccesColor = {gold, hybrid, bronze}
- in_diamond_journal={true, false}
- publicly_funded={true, false}
Inputs:
- outputPath
- statsDB
2023-10-24 09:48:23 +03:00
Claudio Atzori
7fc621cdec
added defaults to the graph resolution workflow config-default.xml
2023-10-20 22:28:12 +02:00
aad5982bf1
Change the description of the workflow
2023-10-20 12:48:21 +03:00
Miriam Baglioni
a4214ced1e
fixing issue on propagation organization. added --config to workflow definition. added oozie_app to communtiy project
2023-10-20 10:14:20 +02:00
6b19dcee80
Add actionset creation for pubmed affiliations
2023-10-19 19:58:25 +03:00
Claudio Atzori
2b9d0416ec
[graph raw] URL Validator to accept double slashes
2023-10-19 16:26:37 +02:00
Claudio Atzori
b0fed1725e
avoid NPEs
2023-10-19 12:13:45 +02:00
Miriam Baglioni
f1b898c6b4
mergin with branch beta
2023-10-19 09:04:35 +02:00
Claudio Atzori
6dfcd0c9a2
[raw graph] mapping original resource types
2023-10-16 12:57:18 +02:00
Claudio Atzori
39d24d5469
Merge branch 'beta' into resource_types
2023-10-16 11:56:38 +02:00
a5a89a702f
new spark parrameter updated
2023-10-16 11:46:12 +02:00
Miriam Baglioni
159388f9c2
testing and fix some issues
2023-10-16 11:26:07 +02:00
Claudio Atzori
03670bb9ce
[dedup] use common saveParquet and save methods to ensure outputs are compressed
2023-10-16 10:55:47 +02:00
Claudio Atzori
54fbf09ac6
[raw graph] WIP: mapping original resource types
2023-10-16 08:57:47 +02:00
Claudio Atzori
6cf64d5d8b
[SWH] renamed 'Software Heritage Identifier' to 'Software Hash Identifier'
2023-10-13 10:09:26 +02:00
Claudio Atzori
76447958bb
cleanup & docs
2023-10-12 12:23:20 +02:00
Claudio Atzori
dda602fff7
[AMF] docs
2023-10-12 10:05:46 +02:00
Miriam Baglioni
8e9493fad9
mergin with branch beta
2023-10-11 18:18:09 +02:00
Miriam Baglioni
89184d5b4f
used the API instead of the IS for bulktagging and propagation for community through organization. Added a new propagation step for communities through projects. Still using the API and not the IS
2023-10-11 18:17:35 +02:00
Claudio Atzori
554551682d
[raw graph] adopting the new COAR based vocabularies for the resource typing
2023-10-11 16:09:19 +02:00
Claudio Atzori
a460ebe215
[UnresolvedEntities] updated action name
2023-10-10 15:50:11 +02:00
Claudio Atzori
66064e99fe
Merge branch 'beta' into fos
2023-10-10 15:07:21 +02:00
Miriam Baglioni
a431b04814
leftover for the properties and removal of bipfinder
2023-10-10 12:53:57 +02:00
Claudio Atzori
ed9282ef2a
removed module dhp-stats-monitor-update
2023-10-10 09:52:03 +02:00
Miriam Baglioni
110ce4b40f
extend the fos model to include the level4 and the scores for level3 and level4. removed bip indicators from the instance
2023-10-10 09:46:40 +02:00
Claudio Atzori
204404b0e3
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-10-10 09:36:13 +02:00
Claudio Atzori
9a98f408b3
code formatting
2023-10-10 09:36:11 +02:00
Claudio Atzori
4e6fccf4f6
Merge pull request 'Beta stats wf updated' ( #332 ) from antonis.lempesis/dnet-hadoop:beta into beta
...
Reviewed-on: #332
2023-10-10 09:35:32 +02:00
Miriam Baglioni
a3d01ccb24
refactoring
2023-10-09 14:52:17 +02:00
Miriam Baglioni
8448b9ebfb
mergin with branch beta
2023-10-09 14:27:23 +02:00
Miriam Baglioni
3d6be20989
changes to use the API instead of the IS the get the information for the communities to be used during bulktagging and context propagation
2023-10-09 14:26:33 +02:00
17586f0ff8
Update step20-createMonitorDB.sql
...
Add result_orcid table to monitor dbs
2023-10-09 14:21:31 +03:00
489a082f04
Update step16-createIndicatorsTables.sql
...
Change scripts for gold, hybrid, bronze indicators
2023-10-09 14:00:50 +03:00
Claudio Atzori
ef833840c3
[Doiboost] removed linkage to SFI unidentified project
2023-10-06 15:48:18 +02:00
Claudio Atzori
84a58802ab
[OC] using the common pid cleaning function
2023-10-06 14:48:05 +02:00
Claudio Atzori
46034630cf
[OC] compress the output actionset
2023-10-06 14:42:02 +02:00
Claudio Atzori
3bc44fbf1d
Merge branch 'beta' into irish_funder
2023-10-06 14:26:41 +02:00
Claudio Atzori
3c23d5f9bc
Merge branch 'beta' into SWH_integration
2023-10-06 14:15:38 +02:00
Claudio Atzori
858931ccb6
[SWH] compress the output actionset
2023-10-06 14:03:33 +02:00
Claudio Atzori
f759b18bca
[SWH] aligned parameter name
2023-10-06 13:43:20 +02:00
Claudio Atzori
eed9fe0902
code formatting
2023-10-06 12:31:17 +02:00
Claudio Atzori
73c49b8d26
Merge branch 'beta' into SWH_integration
2023-10-06 12:21:51 +02:00
42a2dad975
implemented relation to irish funder from a Json list
2023-10-06 11:52:33 +02:00
1bb83b9188
Add prefix in SWH ID
2023-10-04 20:31:45 +03:00
Claudio Atzori
ee8a39e7d2
cleanup and refinements
2023-10-04 12:32:05 +02:00
e9f24df21c
Move SWH API Key from constants to workflow param
2023-10-03 20:57:57 +03:00
cae75fc75d
Add SWH in the collectedFrom field
2023-10-03 16:55:10 +03:00
b49a3ac9b2
Add actionsetsPath as a global WF param
2023-10-03 15:43:38 +03:00
24c43e0c60
Restructure workflow parameters
2023-10-03 15:11:58 +03:00
9f73d93e62
Add param for limiting repo Urls
2023-10-03 14:39:08 +03:00
Claudio Atzori
5919e488dd
Merge branch 'beta' into importpoci
2023-10-03 10:43:53 +02:00
839a8524e7
Add action for creating actionsets
2023-10-02 23:50:38 +03:00
Miriam Baglioni
d7fccdc64b
fixed paths in wf to match the req of the pathname
2023-10-02 14:10:57 +02:00
Miriam Baglioni
9898470b0e
Addressing comments in #340 \#issuecomment-10592
2023-10-02 12:54:16 +02:00
Claudio Atzori
7b403a920f
Merge branch 'beta' into consistency_keep_mergerels
2023-10-02 11:26:00 +02:00
Claudio Atzori
dc86018a5f
Merge branch 'merge_entities_job' into beta
2023-10-02 11:24:48 +02:00
Claudio Atzori
7f244d9a7a
code formatting
2023-10-02 11:04:36 +02:00
Giambattista Bloisi
e239b81740
Fix defect #8997 : GenerateEventsJob is generating huge amounts of logs because broker entity similarity calculation consistently failed
2023-10-02 11:04:18 +02:00
Miriam Baglioni
e84f5b5e64
extended existing codo to accomodate import of POCI from open citation
2023-10-02 09:25:16 +02:00
ab0d70691c
Add step for archiving repoUrls to SWH
2023-09-28 20:56:18 +03:00
ed9c81a0b7
Add steps to collect last visit data && archive not found repository URLs
2023-09-27 19:00:54 +03:00
Alessia Bardi
0935d7757c
Use v5 of the UNIBI Gold ISSN list in test
2023-09-20 15:41:35 +02:00
Alessia Bardi
cc7204a089
tests for d4science catalog
2023-09-20 15:38:32 +02:00
9ef971a146
Update step16-createIndicatorsTables.sql
...
Fix int year for:
indi_org_openess_year
indi_org_fairness_year
indi_org_findable_year
2023-09-19 14:25:42 +03:00
9d44418d38
Add collecting software code repository URLs
2023-09-14 18:43:25 +03:00
395a4af020
Run CC and RAM sequentieally in dhp-impact-indicators WF
2023-09-13 08:59:40 +02:00
Claudio Atzori
4786aa0e09
added Archive ouverte UNIGE (ETHZ.UNIGENF, opendoar____::1400) to the Datacite hostedBy_map
2023-09-07 11:21:07 +02:00
5f90cc11e9
Update step16-createIndicatorsTables.sql
...
Fix indi_pub_bronze_oa
2023-09-06 14:14:38 +03:00
Claudio Atzori
adec6692ca
Merge branch 'beta' into invisible_relations
2023-09-04 16:13:06 +02:00
Claudio Atzori
15666e86a8
added collectedfrom to the affiliation relations imported from Crossref
2023-09-04 15:56:06 +02:00
Claudio Atzori
5b06c9d06f
[graph raw] datainfo.invisible set as true only for entities
2023-09-04 15:15:24 +02:00
7de0164c26
Fix import of affiliations relations from Crossref
2023-09-04 16:04:41 +03:00
Giambattista Bloisi
2caaaec42d
Include SparkCleanRelation logic in SparkPropagateRelation
...
SparkPropagateRelation includes merge relations
Revised tests for SparkPropagateRelation
2023-09-04 11:33:20 +02:00
964c2f553e
Changes in indicators step, monitor step
...
- graduatedoctorates for observatory
- result_apc_affiliations table
- new indicators
indi_is_funder_plan_s
indi_funder_fairness
indi_ris_fairness
indi_funder_openess
indi_ris_openess
indi_funder_findable
indi_ris_findable
indi_is_project_result_after
- cast year to int in composite indicators
- new institutions
-- Universidade Católica Portuguesa
-- Iscte - Instituto Universitário de Lisboa
-- Munster Technological University
-- Cardiff University
-- Leibniz Institute of Ecological Urban and Regional Development
2023-09-01 10:57:02 +03:00
Miriam Baglioni
Sandro La Bruzzo
Claudio Atzori
dimitrispie
Serafeim Chatzopoulos
Giambattista Bloisi
Alessia Bardi