used the API instead of the IS for bulktagging and propagation for community through organization. Added a new propagation step for communities through projects. Still using the API and not the IS

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/PropagationConstant.java

@@ -71,6 +71,9 @@ public class PropagationConstant {
 	public static final String PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_ID = "result:community:organization";
 	public static final String PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_NAME = " Propagation of result belonging to community through organization";
 
+	public static final String PROPAGATION_RESULT_COMMUNITY_PROJECT_CLASS_ID = "result:community:project";
+	public static final String PROPAGATION_RESULT_COMMUNITY_PROJECT_CLASS_NAME = " Propagation of result belonging to community through project";
+
 	public static final String PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_ID = "authorpid:result";
 	public static final String PROPAGATION_ORCID_TO_RESULT_FROM_SEM_REL_CLASS_NAME = "Propagation of authors pid to result through semantic relations";
 

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/api/QueryCommunityAPI.java

@@ -4,22 +4,18 @@ package eu.dnetlib.dhp.api;
 import java.io.BufferedReader;
 import java.io.IOException;
 import java.io.InputStreamReader;
-import java.io.OutputStream;
 import java.net.HttpURLConnection;
-import java.net.MalformedURLException;
 import java.net.URL;
 
-import org.apache.http.HttpHeaders;
 import org.jetbrains.annotations.NotNull;
 
-import com.google.gson.Gson;
-
 /**
  * @author miriam.baglioni
  * @Date 06/10/23
  */
 public class QueryCommunityAPI {
-	private static final String baseUrl = "https://services.openaire.eu/openaire/";
+	private static final String PRODUCTION_BASE_URL = "https://services.openaire.eu/openaire/";
+	private static final String BETA_BASE_URL = "https://beta.services.openaire.eu/openaire/";
 
 	private static String get(String geturl) throws IOException {
 		URL url = new URL(geturl);
@@ -36,25 +32,35 @@ public class QueryCommunityAPI {
 		return body;
 	}
 
-	public static String communities() throws IOException {
-		return get(baseUrl + "community/communities");
+	public static String communities(boolean production) throws IOException {
+		if (production)
+			return get(PRODUCTION_BASE_URL + "community/communities");
+		return get(BETA_BASE_URL + "community/communities");
 	}
 
-	public static String community(String id) throws IOException {
-		return get(baseUrl + "community/" + id);
+	public static String community(String id, boolean production) throws IOException {
+		if (production)
+			return get(PRODUCTION_BASE_URL + "community/" + id);
+		return get(BETA_BASE_URL + "community/" + id);
 	}
 
-	public static String communityDatasource(String id) throws IOException {
-		return get(baseUrl + "community/" + id + "/contentproviders");
+	public static String communityDatasource(String id, boolean production) throws IOException {
+		if (production)
+			return get(PRODUCTION_BASE_URL + "community/" + id + "/contentproviders");
+		return (BETA_BASE_URL + "community/" + id + "/contentproviders");
 
 	}
 
-	public static String communityPropagationOrganization(String id) throws IOException {
-		return get(baseUrl + "community/" + id + "/propagationOrganizations");
+	public static String communityPropagationOrganization(String id, boolean production) throws IOException {
+		if (production)
+			return get(PRODUCTION_BASE_URL + "community/" + id + "/propagationOrganizations");
+		return get(BETA_BASE_URL + "community/" + id + "/propagationOrganizations");
 	}
 
-	public static String communityProjects(String id, String page, String size) throws IOException {
-		return get(baseUrl + "community/" + id + "/projects/" + page + "/" + size);
+	public static String communityProjects(String id, String page, String size, boolean production) throws IOException {
+		if (production)
+			return get(PRODUCTION_BASE_URL + "community/" + id + "/projects/" + page + "/" + size);
+		return get(BETA_BASE_URL + "community/" + id + "/projects/" + page + "/" + size);
 	}
 
 	@NotNull

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/api/Utils.java

@@ -30,14 +30,14 @@ public class Utils implements Serializable {
 	private static final ObjectMapper MAPPER = new ObjectMapper();
 	private static final VerbResolver resolver = VerbResolverFactory.newInstance();
 
-	public static CommunityConfiguration getCommunityConfiguration() throws IOException {
+	public static CommunityConfiguration getCommunityConfiguration(boolean production) throws IOException {
 		final Map<String, Community> communities = Maps.newHashMap();
 		List<Community> validCommunities = new ArrayList<>();
-		getValidCommunities()
+		getValidCommunities(production)
 			.forEach(community -> {
 				try {
 					CommunityModel cm = MAPPER
-						.readValue(QueryCommunityAPI.community(community.getId()), CommunityModel.class);
+						.readValue(QueryCommunityAPI.community(community.getId(), production), CommunityModel.class);
 					validCommunities.add(getCommunity(cm));
 				} catch (IOException e) {
 					throw new RuntimeException(e);
@@ -46,10 +46,11 @@ public class Utils implements Serializable {
 		validCommunities.forEach(community -> {
 			try {
 				DatasourceList dl = MAPPER
-					.readValue(QueryCommunityAPI.communityDatasource(community.getId()), DatasourceList.class);
+					.readValue(
+						QueryCommunityAPI.communityDatasource(community.getId(), production), DatasourceList.class);
 				community.setProviders(dl.stream().map(d -> {
-//                    if(d.getEnabled() == null || Boolean.FALSE.equals(d.getEnabled()))
-//                        return null;
+					if (d.getEnabled() == null || Boolean.FALSE.equals(d.getEnabled()))
+						return null;
 					Provider p = new Provider();
 					p.setOpenaireId("10|" + d.getOpenaireId());
 					p.setSelectionConstraints(d.getSelectioncriteria());
@@ -80,18 +81,20 @@ public class Utils implements Serializable {
 		c.setSubjects(cm.getSubjects());
 		c.getSubjects().addAll(cm.getFos());
 		c.getSubjects().addAll(cm.getSdg());
-		c.setConstraints(cm.getAdvancedConstraints());
-		if (c.getConstraints() != null)
+		if (cm.getAdvancedConstraints() != null) {
+			c.setConstraints(cm.getAdvancedConstraints());
 			c.getConstraints().setSelection(resolver);
-		c.setRemoveConstraints(cm.getRemoveConstraints());
-		if (c.getRemoveConstraints() != null)
+		}
+		if (cm.getRemoveConstraints() != null) {
+			c.setRemoveConstraints(cm.getRemoveConstraints());
 			c.getRemoveConstraints().setSelection(resolver);
+		}
 		return c;
 	}
 
-	public static List<CommunityModel> getValidCommunities() throws IOException {
+	public static List<CommunityModel> getValidCommunities(boolean production) throws IOException {
 		return MAPPER
-			.readValue(QueryCommunityAPI.communities(), CommunitySummary.class)
+			.readValue(QueryCommunityAPI.communities(production), CommunitySummary.class)
 			.stream()
 			.filter(
 				community -> !community.getStatus().equals("hidden") &&
@@ -99,17 +102,26 @@ public class Utils implements Serializable {
 			.collect(Collectors.toList());
 	}
 
-	public static CommunityEntityMap getCommunityOrganization() throws IOException {
+	/**
+	 * it returns for each organization the list of associated communities
+	 */
+	public static CommunityEntityMap getCommunityOrganization(boolean production) throws IOException {
 		CommunityEntityMap organizationMap = new CommunityEntityMap();
-		getValidCommunities()
+		getValidCommunities(production)
 			.forEach(community -> {
 				String id = community.getId();
 				try {
 					List<String> associatedOrgs = MAPPER
-						.readValue(QueryCommunityAPI.communityPropagationOrganization(id), OrganizationList.class);
-					if (associatedOrgs.size() > 0) {
-						organizationMap.put(id, associatedOrgs);
-					}
+						.readValue(
+							QueryCommunityAPI.communityPropagationOrganization(id, production), OrganizationList.class);
+					associatedOrgs.forEach(o -> {
+						if (!organizationMap
+							.keySet()
+							.contains(
+								"20|" + o))
+							organizationMap.put("20|" + o, new ArrayList<>());
+						organizationMap.get("20|" + o).add(community.getId());
+					});
 				} catch (IOException e) {
 					throw new RuntimeException(e);
 				}
@@ -117,26 +129,28 @@ public class Utils implements Serializable {
 		return organizationMap;
 	}
 
-	public static CommunityEntityMap getCommunityProjects() throws IOException {
+	public static CommunityEntityMap getCommunityProjects(boolean production) throws IOException {
 		CommunityEntityMap projectMap = new CommunityEntityMap();
-		getValidCommunities()
+		getValidCommunities(production)
 			.forEach(community -> {
 				int page = -1;
 				int size = 100;
 				ContentModel cm = new ContentModel();
-				List<String> projectList = new ArrayList<>();
 				do {
 					page++;
 					try {
 						cm = MAPPER
 							.readValue(
 								QueryCommunityAPI
-									.communityProjects(community.getId(), String.valueOf(page), String.valueOf(size)),
+									.communityProjects(
+										community.getId(), String.valueOf(page), String.valueOf(size), production),
 								ContentModel.class);
 						if (cm.getContent().size() > 0) {
-
-							cm.getContent().forEach(p -> projectList.add("40|" + p.getOpenaireId()));
-							projectMap.put(community.getId(), projectList);
+							cm.getContent().forEach(p -> {
+								if (!projectMap.keySet().contains("40|" + p.getOpenaireId()))
+									projectMap.put("40|" + p.getOpenaireId(), new ArrayList<>());
+								projectMap.get("40|" + p.getOpenaireId()).add(community.getId());
+							});
 						}
 					} catch (IOException e) {
 						throw new RuntimeException(e);

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/SparkBulkTagJob.java

@@ -23,6 +23,8 @@ import com.google.gson.Gson;
 import eu.dnetlib.dhp.api.Utils;
 import eu.dnetlib.dhp.application.ArgumentApplicationParser;
 import eu.dnetlib.dhp.bulktag.community.*;
+import eu.dnetlib.dhp.schema.common.EntityType;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
 import eu.dnetlib.dhp.schema.oaf.Datasource;
 import eu.dnetlib.dhp.schema.oaf.Result;
 
@@ -53,50 +55,38 @@ public class SparkBulkTagJob {
 			.orElse(Boolean.TRUE);
 		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
 
-		Boolean isTest = Optional
-			.ofNullable(parser.get("isTest"))
-			.map(Boolean::valueOf)
-			.orElse(Boolean.FALSE);
-		log.info("isTest: {} ", isTest);
-
 		final String inputPath = parser.get("sourcePath");
 		log.info("inputPath: {}", inputPath);
 
 		final String outputPath = parser.get("outputPath");
 		log.info("outputPath: {}", outputPath);
 
+		final boolean production = Boolean.valueOf(parser.get("production"));
+		log.info("production: {}", production);
+
 		ProtoMap protoMappingParams = new Gson().fromJson(parser.get("pathMap"), ProtoMap.class);
 		log.info("pathMap: {}", new Gson().toJson(protoMappingParams));
 
-		final String resultClassName = parser.get("resultTableName");
-		log.info("resultTableName: {}", resultClassName);
-
-		final Boolean saveGraph = Optional
-			.ofNullable(parser.get("saveGraph"))
-			.map(Boolean::valueOf)
-			.orElse(Boolean.TRUE);
-		log.info("saveGraph: {}", saveGraph);
-
-		Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName);
-
 		SparkConf conf = new SparkConf();
 		CommunityConfiguration cc;
 
-		String taggingConf = parser.get("taggingConf");
+		String taggingConf = Optional
+			.ofNullable(parser.get("taggingConf"))
+			.map(String::valueOf)
+			.orElse(null);
 
-		if (isTest) {
+		if (taggingConf != null) {
 			cc = CommunityConfigurationFactory.newInstance(taggingConf);
 		} else {
-			cc = Utils.getCommunityConfiguration();// QueryInformationSystem.getCommunityConfiguration(parser.get("isLookUpUrl"));
+			cc = Utils.getCommunityConfiguration(production);
 		}
 
 		runWithSparkSession(
 			conf,
 			isSparkSessionManaged,
 			spark -> {
-				removeOutputDir(spark, outputPath);
 				extendCommunityConfigurationForEOSC(spark, inputPath, cc);
-				execBulkTag(spark, inputPath, outputPath, protoMappingParams, resultClazz, cc);
+				execBulkTag(spark, inputPath, outputPath, protoMappingParams, cc);
 			});
 	}
 
@@ -141,22 +131,30 @@ public class SparkBulkTagJob {
 		String inputPath,
 		String outputPath,
 		ProtoMap protoMappingParams,
-		Class<R> resultClazz,
 		CommunityConfiguration communityConfiguration) {
 
-		ResultTagger resultTagger = new ResultTagger();
-		readPath(spark, inputPath, resultClazz)
-			.map(patchResult(), Encoders.bean(resultClazz))
-			.filter(Objects::nonNull)
-			.map(
-				(MapFunction<R, R>) value -> resultTagger
-					.enrichContextCriteria(
-						value, communityConfiguration, protoMappingParams),
-				Encoders.bean(resultClazz))
-			.write()
-			.mode(SaveMode.Overwrite)
-			.option("compression", "gzip")
-			.json(outputPath);
+		ModelSupport.entityTypes
+			.keySet()
+			.parallelStream()
+			.filter(e -> ModelSupport.isResult(e))
+			.forEach(e -> {
+				removeOutputDir(spark, outputPath + e.name());
+				ResultTagger resultTagger = new ResultTagger();
+				Class<R> resultClazz = ModelSupport.entityTypes.get(e);
+				readPath(spark, inputPath + e.name(), resultClazz)
+					.map(patchResult(), Encoders.bean(resultClazz))
+					.filter(Objects::nonNull)
+					.map(
+						(MapFunction<R, R>) value -> resultTagger
+							.enrichContextCriteria(
+								value, communityConfiguration, protoMappingParams),
+						Encoders.bean(resultClazz))
+					.write()
+					.mode(SaveMode.Overwrite)
+					.option("compression", "gzip")
+					.json(outputPath + e.name());
+			});
+
 	}
 
 	public static <R> Dataset<R> readPath(

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/bulktag/community/ResultTagger.java

@@ -82,19 +82,23 @@ public class ResultTagger implements Serializable {
 		// communities contains all the communities to be not added to the context
 		final Set<String> removeCommunities = new HashSet<>();
 
+		// if (conf.getRemoveConstraintsMap().keySet().size() > 0)
 		conf
 			.getRemoveConstraintsMap()
 			.keySet()
-			.forEach(communityId -> {
-				if (conf.getRemoveConstraintsMap().get(communityId).getCriteria() != null &&
-					conf
-						.getRemoveConstraintsMap()
-						.get(communityId)
-						.getCriteria()
-						.stream()
-						.anyMatch(crit -> crit.verifyCriteria(param)))
-					removeCommunities.add(communityId);
-			});
+			.forEach(
+				communityId -> {
+					// log.info("Remove constraints for " + communityId);
+					if (conf.getRemoveConstraintsMap().keySet().contains(communityId) &&
+						conf.getRemoveConstraintsMap().get(communityId).getCriteria() != null &&
+						conf
+							.getRemoveConstraintsMap()
+							.get(communityId)
+							.getCriteria()
+							.stream()
+							.anyMatch(crit -> crit.verifyCriteria(param)))
+						removeCommunities.add(communityId);
+				});
 
 		// communities contains all the communities to be added as context for the result
 		final Set<String> communities = new HashSet<>();
@@ -124,10 +128,10 @@ public class ResultTagger implements Serializable {
 		if (Objects.nonNull(result.getInstance())) {
 			for (Instance i : result.getInstance()) {
 				if (Objects.nonNull(i.getCollectedfrom()) && Objects.nonNull(i.getCollectedfrom().getKey())) {
-					collfrom.add(StringUtils.substringAfter(i.getCollectedfrom().getKey(), "|"));
+					collfrom.add(i.getCollectedfrom().getKey());
 				}
 				if (Objects.nonNull(i.getHostedby()) && Objects.nonNull(i.getHostedby().getKey())) {
-					hostdby.add(StringUtils.substringAfter(i.getHostedby().getKey(), "|"));
+					hostdby.add(i.getHostedby().getKey());
 				}
 
 			}

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/PrepareResultCommunitySet.java

@@ -48,11 +48,10 @@ public class PrepareResultCommunitySet {
 		final String outputPath = parser.get("outputPath");
 		log.info("outputPath: {}", outputPath);
 
-//		final CommunityEntityMap organizationMap = new Gson()
-//			.fromJson(
-//				parser.get("organizationtoresultcommunitymap"),
-//				CommunityEntityMap.class);
-		final CommunityEntityMap organizationMap = Utils.getCommunityOrganization();
+		final boolean production = Boolean.valueOf(parser.get("production"));
+		log.info("production: {}", production);
+
+		final CommunityEntityMap organizationMap = Utils.getCommunityOrganization(production);
 		log.info("organizationMap: {}", new Gson().toJson(organizationMap));
 
 		SparkConf conf = new SparkConf();

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromorganization/SparkResultToCommunityFromOrganizationJob.java

@@ -56,12 +56,6 @@ public class SparkResultToCommunityFromOrganizationJob {
 		final String resultClassName = parser.get("resultTableName");
 		log.info("resultTableName: {}", resultClassName);
 
-		final Boolean saveGraph = Optional
-			.ofNullable(parser.get("saveGraph"))
-			.map(Boolean::valueOf)
-			.orElse(Boolean.TRUE);
-		log.info("saveGraph: {}", saveGraph);
-
 		@SuppressWarnings("unchecked")
 		Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName);
 
@@ -73,9 +67,9 @@ public class SparkResultToCommunityFromOrganizationJob {
 			isSparkSessionManaged,
 			spark -> {
 				removeOutputDir(spark, outputPath);
-				if (saveGraph) {
-					execPropagation(spark, inputPath, outputPath, resultClazz, possibleupdatespath);
-				}
+
+				execPropagation(spark, inputPath, outputPath, resultClazz, possibleupdatespath);
+
 			});
 	}
 

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromproject/PrepareResultCommunitySet.java

@@ -0,0 +1,121 @@
+
+package eu.dnetlib.dhp.resulttocommunityfromproject;
+
+import static eu.dnetlib.dhp.PropagationConstant.*;
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
+
+import java.util.*;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.hadoop.io.compress.GzipCodec;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.api.java.function.MapGroupsFunction;
+import org.apache.spark.sql.*;
+import org.apache.spark.sql.types.DataTypes;
+import org.apache.spark.sql.types.StructType;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import com.google.gson.Gson;
+
+import eu.dnetlib.dhp.api.Utils;
+import eu.dnetlib.dhp.api.model.CommunityEntityMap;
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.resulttocommunityfromorganization.ResultCommunityList;
+import eu.dnetlib.dhp.resulttocommunityfromorganization.ResultOrganizations;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.oaf.Relation;
+import scala.Tuple2;
+
+public class PrepareResultCommunitySet {
+
+	private static final Logger log = LoggerFactory.getLogger(PrepareResultCommunitySet.class);
+
+	public static void main(String[] args) throws Exception {
+		String jsonConfiguration = IOUtils
+			.toString(
+				PrepareResultCommunitySet.class
+					.getResourceAsStream(
+						"/eu/dnetlib/dhp/resulttocommunityfromproject/input_preparecommunitytoresult_parameters.json"));
+
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+		parser.parseArgument(args);
+
+		Boolean isSparkSessionManaged = isSparkSessionManaged(parser);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+		String inputPath = parser.get("sourcePath");
+		log.info("inputPath: {}", inputPath);
+
+		final String outputPath = parser.get("outputPath");
+		log.info("outputPath: {}", outputPath);
+
+		final boolean production = Boolean.valueOf(parser.get("outputPath"));
+		log.info("production: {}", production);
+
+		final CommunityEntityMap projectsMap = Utils.getCommunityProjects(production);
+		log.info("projectsMap: {}", new Gson().toJson(projectsMap));
+
+		SparkConf conf = new SparkConf();
+		conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
+
+		runWithSparkHiveSession(
+			conf,
+			isSparkSessionManaged,
+			spark -> {
+				removeOutputDir(spark, outputPath);
+				prepareInfo(spark, inputPath, outputPath, projectsMap);
+			});
+	}
+
+	private static void prepareInfo(
+		SparkSession spark,
+		String inputPath,
+		String outputPath,
+		CommunityEntityMap projectMap) {
+
+		final StructType structureSchema = new StructType()
+			.add(
+				"dataInfo", new StructType()
+					.add("deletedbyinference", DataTypes.BooleanType)
+					.add("invisible", DataTypes.BooleanType))
+			.add("source", DataTypes.StringType)
+			.add("target", DataTypes.StringType)
+			.add("relClass", DataTypes.StringType);
+
+		spark
+			.read()
+			.schema(structureSchema)
+			.json(inputPath)
+			.filter(
+				"dataInfo.deletedbyinference != true " +
+					"and relClass == '" + ModelConstants.IS_PRODUCED_BY + "'")
+			.select(
+				new Column("source").as("resultId"),
+				new Column("target").as("projectId"))
+			.groupByKey((MapFunction<Row, String>) r -> (String) r.getAs("source"), Encoders.STRING())
+			.mapGroups((MapGroupsFunction<String, Row, ResultProjectList>) (k, v) -> {
+				ResultProjectList rpl = new ResultProjectList();
+				rpl.setResultId(k);
+				ArrayList<String> cl = new ArrayList<>();
+				cl.addAll(projectMap.get(v.next().getAs("target")));
+				v.forEachRemaining(r -> {
+					projectMap
+						.get(r.getAs("target"))
+						.forEach(c -> {
+							if (!cl.contains(c))
+								cl.add(c);
+						});
+
+				});
+				rpl.setCommunityList(cl);
+				return rpl;
+			}, Encoders.bean(ResultProjectList.class))
+			.write()
+			.mode(SaveMode.Overwrite)
+			.option("compression", "gzip")
+			.json(outputPath);
+	}
+
+}

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromproject/ResultProjectList.java

@@ -0,0 +1,26 @@
+
+package eu.dnetlib.dhp.resulttocommunityfromproject;
+
+import java.io.Serializable;
+import java.util.ArrayList;
+
+public class ResultProjectList implements Serializable {
+	private String resultId;
+	private ArrayList<String> communityList;
+
+	public String getResultId() {
+		return resultId;
+	}
+
+	public void setResultId(String resultId) {
+		this.resultId = resultId;
+	}
+
+	public ArrayList<String> getCommunityList() {
+		return communityList;
+	}
+
+	public void setCommunityList(ArrayList<String> communityList) {
+		this.communityList = communityList;
+	}
+}

dhp-workflows/dhp-enrichment/src/main/java/eu/dnetlib/dhp/resulttocommunityfromproject/SparkResultToCommunityFromProject.java

@@ -0,0 +1,156 @@
+
+package eu.dnetlib.dhp.resulttocommunityfromproject;
+
+import static eu.dnetlib.dhp.PropagationConstant.*;
+import static eu.dnetlib.dhp.PropagationConstant.PROPAGATION_RESULT_COMMUNITY_ORGANIZATION_CLASS_NAME;
+import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkHiveSession;
+
+import java.io.Serializable;
+import java.util.ArrayList;
+import java.util.Arrays;
+import java.util.List;
+import java.util.Optional;
+import java.util.stream.Collectors;
+
+import org.apache.commons.io.IOUtils;
+import org.apache.spark.SparkConf;
+import org.apache.spark.api.java.function.MapFunction;
+import org.apache.spark.sql.Dataset;
+import org.apache.spark.sql.Encoders;
+import org.apache.spark.sql.SaveMode;
+import org.apache.spark.sql.SparkSession;
+import org.slf4j.Logger;
+import org.slf4j.LoggerFactory;
+
+import eu.dnetlib.dhp.application.ArgumentApplicationParser;
+import eu.dnetlib.dhp.resulttocommunityfromorganization.ResultCommunityList;
+import eu.dnetlib.dhp.resulttocommunityfromorganization.SparkResultToCommunityFromOrganizationJob;
+import eu.dnetlib.dhp.schema.common.ModelConstants;
+import eu.dnetlib.dhp.schema.common.ModelSupport;
+import eu.dnetlib.dhp.schema.oaf.Context;
+import eu.dnetlib.dhp.schema.oaf.Result;
+import scala.Tuple2;
+
+/**
+ * @author miriam.baglioni
+ * @Date 11/10/23
+ */
+public class SparkResultToCommunityFromProject implements Serializable {
+	private static final Logger log = LoggerFactory.getLogger(SparkResultToCommunityFromProject.class);
+
+	public static void main(String[] args) throws Exception {
+		String jsonConfiguration = IOUtils
+			.toString(
+				SparkResultToCommunityFromProject.class
+					.getResourceAsStream(
+						"/eu/dnetlib/dhp/resulttocommunityfromproject/input_communitytoresult_parameters.json"));
+
+		final ArgumentApplicationParser parser = new ArgumentApplicationParser(jsonConfiguration);
+
+		parser.parseArgument(args);
+
+		Boolean isSparkSessionManaged = isSparkSessionManaged(parser);
+		log.info("isSparkSessionManaged: {}", isSparkSessionManaged);
+
+		String inputPath = parser.get("sourcePath");
+		log.info("inputPath: {}", inputPath);
+
+		final String outputPath = parser.get("outputPath");
+		log.info("outputPath: {}", outputPath);
+
+		final String possibleupdatespath = parser.get("preparedInfoPath");
+		log.info("preparedInfoPath: {}", possibleupdatespath);
+
+		final String resultClassName = parser.get("resultTableName");
+		log.info("resultTableName: {}", resultClassName);
+
+		@SuppressWarnings("unchecked")
+		Class<? extends Result> resultClazz = (Class<? extends Result>) Class.forName(resultClassName);
+
+		SparkConf conf = new SparkConf();
+		conf.set("hive.metastore.uris", parser.get("hive_metastore_uris"));
+
+		runWithSparkHiveSession(
+			conf,
+			isSparkSessionManaged,
+			spark -> {
+//                    removeOutputDir(spark, outputPath);
+
+				execPropagation(spark, inputPath, outputPath, possibleupdatespath);
+
+			});
+	}
+
+	private static <R extends Result> void execPropagation(
+		SparkSession spark,
+		String inputPath,
+		String outputPath,
+
+		String possibleUpdatesPath) {
+
+		Dataset<ResultProjectList> possibleUpdates = readPath(spark, possibleUpdatesPath, ResultProjectList.class);
+
+		ModelSupport.entityTypes
+			.keySet()
+			.parallelStream()
+			.forEach(e -> {
+				if (ModelSupport.isResult(e)) {
+					removeOutputDir(spark, outputPath + e.name());
+					Class<R> resultClazz = ModelSupport.entityTypes.get(e);
+					Dataset<R> result = readPath(spark, inputPath + e.name(), resultClazz);
+
+					result
+						.joinWith(
+							possibleUpdates,
+							result.col("id").equalTo(possibleUpdates.col("resultId")),
+							"left_outer")
+						.map(resultCommunityFn(), Encoders.bean(resultClazz))
+						.write()
+						.mode(SaveMode.Overwrite)
+						.option("compression", "gzip")
+						.json(outputPath);
+				}
+			});
+
+	}
+
+	private static <R extends Result> MapFunction<Tuple2<R, ResultProjectList>, R> resultCommunityFn() {
+		return value -> {
+			R ret = value._1();
+			Optional<ResultProjectList> rcl = Optional.ofNullable(value._2());
+			if (rcl.isPresent()) {
+				ArrayList<String> communitySet = rcl.get().getCommunityList();
+				List<String> contextList = ret
+					.getContext()
+					.stream()
+					.map(Context::getId)
+					.collect(Collectors.toList());
+
+				@SuppressWarnings("unchecked")
+				R res = (R) ret.getClass().newInstance();
+
+				res.setId(ret.getId());
+				List<Context> propagatedContexts = new ArrayList<>();
+				for (String cId : communitySet) {
+					if (!contextList.contains(cId)) {
+						Context newContext = new Context();
+						newContext.setId(cId);
+						newContext
+							.setDataInfo(
+								Arrays
+									.asList(
+										getDataInfo(
+											PROPAGATION_DATA_INFO_TYPE,
+											PROPAGATION_RESULT_COMMUNITY_PROJECT_CLASS_ID,
+											PROPAGATION_RESULT_COMMUNITY_PROJECT_CLASS_NAME,
+											ModelConstants.DNET_PROVENANCE_ACTIONS)));
+						propagatedContexts.add(newContext);
+					}
+				}
+				res.setContext(propagatedContexts);
+				ret.mergeFrom(res);
+			}
+			return ret;
+		};
+	}
+}

dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/bulktag/input_bulkTag_parameters.json

@@ -1,10 +1,5 @@
 [
-  {
-    "paramName":"is",
-    "paramLongName":"isLookUpUrl",
-    "paramDescription": "URL of the isLookUp Service",
-    "paramRequired": true
-  },
+
   {
     "paramName":"s",
     "paramLongName":"sourcePath",
@@ -17,12 +12,7 @@
     "paramDescription": "the json path associated to each selection field",
     "paramRequired": true
   },
-  {
-    "paramName":"tn",
-    "paramLongName":"resultTableName",
-    "paramDescription": "the name of the result table we are currently working on",
-    "paramRequired": true
-  },
+
   {
     "paramName": "out",
     "paramLongName": "outputPath",
@@ -35,17 +25,19 @@
     "paramDescription": "true if the spark session is managed, false otherwise",
     "paramRequired": false
   },
-  {
-    "paramName": "test",
-    "paramLongName": "isTest",
-    "paramDescription": "Parameter intended for testing purposes only. True if the reun is relatesd to a test and so the taggingConf parameter should be loaded",
-    "paramRequired": false
-  },
+
   {
     "paramName": "tg",
     "paramLongName": "taggingConf",
     "paramDescription": "this parameter is intended for testing purposes only. It is a possible tagging configuration obtained via the XQUERY. Intended to be removed",
     "paramRequired": false
+  },
+
+  {
+    "paramName": "p",
+    "paramLongName": "production",
+    "paramDescription": "this parameter is intended for testing purposes only. It is a possible tagging configuration obtained via the XQUERY. Intended to be removed",
+    "paramRequired": true
   }
 
 ]

dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/bulktag/oozie_app/workflow.xml

@@ -4,10 +4,6 @@
             <name>sourcePath</name>
             <description>the source path</description>
         </property>
-        <property>
-            <name>isLookUpUrl</name>
-            <description>the isLookup service endpoint</description>
-        </property>
         <property>
             <name>pathMap</name>
             <description>the json path associated to each selection field</description>
@@ -44,7 +40,7 @@
         </configuration>
     </global>
 
-    <start to="reset_outputpath"/>
+    <start to="exec_bulktag"/>
 
     <kill name="Kill">
         <message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
@@ -102,16 +98,9 @@
         <error to="Kill"/>
     </action>
 
-    <join name="copy_wait" to="fork_exec_bulktag"/>
+    <join name="copy_wait" to="exec_bulktag"/>
 
-    <fork name="fork_exec_bulktag">
-        <path start="bulktag_publication"/>
-        <path start="bulktag_dataset"/>
-        <path start="bulktag_otherresearchproduct"/>
-        <path start="bulktag_software"/>
-    </fork>
-
-    <action name="bulktag_publication">
+    <action name="exec_bulktag">
         <spark xmlns="uri:oozie:spark-action:0.2">
             <master>yarn-cluster</master>
             <mode>cluster</mode>
@@ -128,98 +117,15 @@
                 --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
                 --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
             </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}/publication</arg>
-            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Publication</arg>
-            <arg>--outputPath</arg><arg>${outputPath}/publication</arg>
+            <arg>--sourcePath</arg><arg>${sourcePath}/</arg>
+            <arg>--outputPath</arg><arg>${outputPath}/</arg>
             <arg>--pathMap</arg><arg>${pathMap}</arg>
-            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
+            <arg>--production</arg><arg>${production}</arg>
         </spark>
-        <ok to="wait"/>
+        <ok to="End"/>
         <error to="Kill"/>
     </action>
 
-    <action name="bulktag_dataset">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>bulkTagging-dataset</name>
-            <class>eu.dnetlib.dhp.bulktag.SparkBulkTagJob</class>
-            <jar>dhp-enrichment-${projectVersion}.jar</jar>
-            <spark-opts>
-                --num-executors=${sparkExecutorNumber}
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}/dataset</arg>
-            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Dataset</arg>
-            <arg>--outputPath</arg><arg>${outputPath}/dataset</arg>
-            <arg>--pathMap</arg><arg>${pathMap}</arg>
-            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-        </spark>
-        <ok to="wait"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="bulktag_otherresearchproduct">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>bulkTagging-orp</name>
-            <class>eu.dnetlib.dhp.bulktag.SparkBulkTagJob</class>
-            <jar>dhp-enrichment-${projectVersion}.jar</jar>
-            <spark-opts>
-                --num-executors=${sparkExecutorNumber}
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}/otherresearchproduct</arg>
-            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.OtherResearchProduct</arg>
-            <arg>--outputPath</arg><arg>${outputPath}/otherresearchproduct</arg>
-            <arg>--pathMap</arg><arg>${pathMap}</arg>
-            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-        </spark>
-        <ok to="wait"/>
-        <error to="Kill"/>
-    </action>
-
-    <action name="bulktag_software">
-        <spark xmlns="uri:oozie:spark-action:0.2">
-            <master>yarn-cluster</master>
-            <mode>cluster</mode>
-            <name>bulkTagging-software</name>
-            <class>eu.dnetlib.dhp.bulktag.SparkBulkTagJob</class>
-            <jar>dhp-enrichment-${projectVersion}.jar</jar>
-            <spark-opts>
-                --num-executors=${sparkExecutorNumber}
-                --executor-memory=${sparkExecutorMemory}
-                --executor-cores=${sparkExecutorCores}
-                --driver-memory=${sparkDriverMemory}
-                --conf spark.extraListeners=${spark2ExtraListeners}
-                --conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
-                --conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
-                --conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
-            </spark-opts>
-            <arg>--sourcePath</arg><arg>${sourcePath}/software</arg>
-            <arg>--resultTableName</arg><arg>eu.dnetlib.dhp.schema.oaf.Software</arg>
-            <arg>--outputPath</arg><arg>${outputPath}/software</arg>
-            <arg>--pathMap</arg><arg>${pathMap}</arg>
-            <arg>--isLookUpUrl</arg><arg>${isLookUpUrl}</arg>
-        </spark>
-        <ok to="wait"/>
-        <error to="Kill"/>
-    </action>
-
-    <join name="wait" to="End"/>
 
 
     <end name="End"/>

dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/bulktag/query.xq

@@ -1,62 +0,0 @@
-for $x in collection('/db/DRIVER/ContextDSResources/ContextDSResourceType')
-let $subj := $x//CONFIGURATION/context/param[./@name='subject']/text()
-let $datasources := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::contentproviders')]/concept
-let $organizations := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::resultorganizations')]/concept
-let $communities := $x//CONFIGURATION/context/category[./@id=concat($x//CONFIGURATION/context/@id,'::zenodocommunities')]/concept
-let $fos := $x//CONFIGURATION/context/param[./@name='fos']/text()
-let $sdg := $x//CONFIGURATION/context/param[./@name='sdg']/text()
-let $zenodo := $x//param[./@name='zenodoCommunity']/text()
-where $x//CONFIGURATION/context[./@type='community' or ./@type='ri'] and $x//context/param[./@name = 'status']/text() != 'hidden'
-return
-<community>
-{ $x//CONFIGURATION/context/@id}
-<removeConstraints>
-{$x//CONFIGURATION/context/param[./@name='removeConstraints']/text() }
-</removeConstraints>
-<advancedConstraints>
-{$x//CONFIGURATION/context/param[./@name='advancedConstraints']/text() }
-</advancedConstraints>
- <subjects>
- {for $y in tokenize($subj,',')
- return
- <subject>{$y}</subject>}
- {for $y in tokenize($fos,',')
- return
- <subject>{$y}</subject>}
- {for $y in tokenize($sdg,',')
- return
- <subject>{$y}</subject>}
- </subjects>
- <datasources>
- {for $d in $datasources
- where $d/param[./@name='enabled']/text()='true'
- return
- <datasource>
- <openaireId>
- {$d//param[./@name='openaireId']/text()}
- </openaireId>
- <selcriteria>
- {$d/param[./@name='selcriteria']/text()}
- </selcriteria>
- </datasource> }
- </datasources>
-  <zenodocommunities>
-{for $zc in $zenodo
-return
-<zenodocommunity>
-<zenodoid>
-{$zc}
-</zenodoid>
-</zenodocommunity>}
-{for $zc in $communities
-return
-<zenodocommunity>
-<zenodoid>
-{$zc/param[./@name='zenodoid']/text()}
-</zenodoid>
-<selcriteria>
-{$zc/param[./@name='selcriteria']/text()}
-</selcriteria>
-</zenodocommunity>}
-</zenodocommunities>
-</community>

dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/input_communitytoresult_parameters.json

@@ -11,18 +11,6 @@
     "paramDescription": "the hive metastore uris",
     "paramRequired": true
   },
-  {
-    "paramName":"sg",
-    "paramLongName":"saveGraph",
-    "paramDescription": "true if the new version of the graph must be saved",
-    "paramRequired": false
-  },
-  {
-    "paramName":"test",
-    "paramLongName":"isTest",
-    "paramDescription": "true if it is executing a test",
-    "paramRequired": false
-  },
   {
     "paramName": "out",
     "paramLongName": "outputPath",

dhp-workflows/dhp-enrichment/src/main/resources/eu/dnetlib/dhp/resulttocommunityfromorganization/oozie_app/workflow.xml

@@ -4,10 +4,7 @@
             <name>sourcePath</name>
             <description>the source path</description>
         </property>
-<!--        <property>-->
-<!--            <name>organizationtoresultcommunitymap</name>-->
-<!--            <description>organization community map</description>-->
-<!--        </property>-->
+
         <property>
             <name>outputPath</name>
             <description>the output path</description>
@@ -106,7 +103,7 @@
             <arg>--sourcePath</arg><arg>${sourcePath}/relation</arg>
             <arg>--outputPath</arg><arg>${workingDir}/preparedInfo/resultCommunityList</arg>
             <arg>--hive_metastore_uris</arg><arg>${hive_metastore_uris}</arg>
-            <arg>--organizationtoresultcommunitymap</arg><arg>${organizationtoresultcommunitymap}</arg>
+
         </spark>
         <ok to="fork-join-exec-propagation"/>
         <error to="Kill"/>

dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/BulkTagJobTest.java

@@ -6,6 +6,7 @@ import static eu.dnetlib.dhp.bulktag.community.TaggingConstants.ZENODO_COMMUNITY
 import java.io.IOException;
 import java.nio.file.Files;
 import java.nio.file.Path;
+import java.util.HashMap;
 import java.util.List;
 
 import org.apache.commons.io.FileUtils;
@@ -98,14 +99,11 @@ public class BulkTagJobTest {
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath",
-					getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates").getPath(),
+					getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates/").getPath(),
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+					"-outputPath", workingDir.toString() + "/",
 					"-pathMap", pathMap
 				});
 
@@ -133,19 +131,16 @@ public class BulkTagJobTest {
 	@Test
 	void bulktagBySubjectNoPreviousContextTest() throws Exception {
 		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/nocontext")
+			.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/nocontext/")
 			.getPath();
 		final String pathMap = BulkTagJobTest.pathMap;
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+					"-outputPath", workingDir.toString() + "/",
 					"-pathMap", pathMap
 				});
 
@@ -230,19 +225,19 @@ public class BulkTagJobTest {
 	void bulktagBySubjectPreviousContextNoProvenanceTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/contextnoprovenance")
+				"/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject/contextnoprovenance/")
 			.getPath();
 		final String pathMap = BulkTagJobTest.pathMap;
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -311,18 +306,18 @@ public class BulkTagJobTest {
 	@Test
 	void bulktagByDatasourceTest() throws Exception {
 		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/bulktag/sample/publication/update_datasource")
+			.getResource("/eu/dnetlib/dhp/bulktag/sample/publication/update_datasource/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Publication",
-					"-outputPath", workingDir.toString() + "/publication",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -384,25 +379,25 @@ public class BulkTagJobTest {
 	void bulktagByZenodoCommunityTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/bulktag/sample/otherresearchproduct/update_zenodocommunity")
+				"/eu/dnetlib/dhp/bulktag/sample/otherresearchproduct/update_zenodocommunity/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
-					"-outputPath", workingDir.toString() + "/orp",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
 
 		JavaRDD<OtherResearchProduct> tmp = sc
-			.textFile(workingDir.toString() + "/orp")
+			.textFile(workingDir.toString() + "/otherresearchproduct")
 			.map(item -> OBJECT_MAPPER.readValue(item, OtherResearchProduct.class));
 
 		Assertions.assertEquals(10, tmp.count());
@@ -505,18 +500,18 @@ public class BulkTagJobTest {
 	@Test
 	void bulktagBySubjectDatasourceTest() throws Exception {
 		final String sourcePath = getClass()
-			.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject_datasource")
+			.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_subject_datasource/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -636,14 +631,14 @@ public class BulkTagJobTest {
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath",
-					getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/software/software_10.json.gz").getPath(),
+					getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/software/").getPath(),
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
-					"-outputPath", workingDir.toString() + "/software",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -732,18 +727,18 @@ public class BulkTagJobTest {
 
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints")
+				"/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -774,19 +769,19 @@ public class BulkTagJobTest {
 	void bulkTagOtherJupyter() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/jupyter/otherresearchproduct")
+				"/eu/dnetlib/dhp/eosctag/jupyter/")
 			.getPath();
 
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
-					"-outputPath", workingDir.toString() + "/otherresearchproduct",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -829,18 +824,18 @@ public class BulkTagJobTest {
 	public void bulkTagDatasetJupyter() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/jupyter/dataset")
+				"/eu/dnetlib/dhp/eosctag/jupyter/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -878,18 +873,18 @@ public class BulkTagJobTest {
 
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/jupyter/software")
+				"/eu/dnetlib/dhp/eosctag/jupyter/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
-					"-outputPath", workingDir.toString() + "/software",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1096,18 +1091,18 @@ public class BulkTagJobTest {
 	void galaxyOtherTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/galaxy/otherresearchproduct")
+				"/eu/dnetlib/dhp/eosctag/galaxy/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
-					"-outputPath", workingDir.toString() + "/otherresearchproduct",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1214,18 +1209,18 @@ public class BulkTagJobTest {
 	void galaxySoftwareTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/galaxy/software")
+				"/eu/dnetlib/dhp/eosctag/galaxy/")
 			.getPath();
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
-					"-outputPath", workingDir.toString() + "/software",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1333,19 +1328,19 @@ public class BulkTagJobTest {
 	void twitterDatasetTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/twitter/dataset")
+				"/eu/dnetlib/dhp/eosctag/twitter/")
 			.getPath();
 
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1373,19 +1368,19 @@ public class BulkTagJobTest {
 	void twitterOtherTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/twitter/otherresearchproduct")
+				"/eu/dnetlib/dhp/eosctag/twitter/")
 			.getPath();
 
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.OtherResearchProduct",
-					"-outputPath", workingDir.toString() + "/otherresearchproduct",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1418,19 +1413,19 @@ public class BulkTagJobTest {
 	void twitterSoftwareTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/eosctag/twitter/software")
+				"/eu/dnetlib/dhp/eosctag/twitter/")
 			.getPath();
 
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Software",
-					"-outputPath", workingDir.toString() + "/software",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1455,19 +1450,19 @@ public class BulkTagJobTest {
 	void EoscContextTagTest() throws Exception {
 		final String sourcePath = getClass()
 			.getResource(
-				"/eu/dnetlib/dhp/bulktag/eosc/dataset/dataset_10.json")
+				"/eu/dnetlib/dhp/bulktag/eosc/dataset/")
 			.getPath();
 
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath", sourcePath,
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 
@@ -1533,16 +1528,16 @@ public class BulkTagJobTest {
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath",
 					getClass()
-						.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints")
+						.getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/update_datasourcewithconstraints/")
 						.getPath(),
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+
 					"-pathMap", pathMap
 				});
 		final JavaSparkContext sc = JavaSparkContext.fromSparkContext(spark.sparkContext());
@@ -1574,14 +1569,14 @@ public class BulkTagJobTest {
 		SparkBulkTagJob
 			.main(
 				new String[] {
-					"-isTest", Boolean.TRUE.toString(),
+
 					"-isSparkSessionManaged", Boolean.FALSE.toString(),
 					"-sourcePath",
-					getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates").getPath(),
+					getClass().getResource("/eu/dnetlib/dhp/bulktag/sample/dataset/no_updates/").getPath(),
 					"-taggingConf", taggingConf,
-					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
-					"-outputPath", workingDir.toString() + "/dataset",
-					"-isLookUpUrl", MOCK_IS_LOOK_UP_URL,
+
+					"-outputPath", workingDir.toString() + "/",
+					"-production", Boolean.TRUE.toString(),
 					"-pathMap", pathMap
 				});
 

dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/bulktag/QueryCommunityAPITest.java

@@ -26,7 +26,7 @@ public class QueryCommunityAPITest {
 
 	@Test
 	void communityList() throws Exception {
-		String body = QueryCommunityAPI.communities();
+		String body = QueryCommunityAPI.communities(true);
 		new ObjectMapper()
 			.readValue(body, CommunitySummary.class)
 			.forEach(p -> {
@@ -41,7 +41,7 @@ public class QueryCommunityAPITest {
 	@Test
 	void community() throws Exception {
 		String id = "dh-ch";
-		String body = QueryCommunityAPI.community(id);
+		String body = QueryCommunityAPI.community(id, true);
 		System.out
 			.println(
 				new ObjectMapper()
@@ -53,7 +53,7 @@ public class QueryCommunityAPITest {
 	@Test
 	void communityDatasource() throws Exception {
 		String id = "dh-ch";
-		String body = QueryCommunityAPI.communityDatasource(id);
+		String body = QueryCommunityAPI.communityDatasource(id, true);
 		new ObjectMapper()
 			.readValue(body, DatasourceList.class)
 			.forEach(ds -> {
@@ -68,7 +68,7 @@ public class QueryCommunityAPITest {
 
 	@Test
 	void validCommunities() throws Exception {
-		CommunityConfiguration cc = Utils.getCommunityConfiguration();
+		CommunityConfiguration cc = Utils.getCommunityConfiguration(true);
 		System.out.println(cc.getCommunities().keySet());
 		Community community = cc.getCommunities().get("aurora");
 		Assertions.assertEquals(0, community.getSubjects().size());
@@ -84,11 +84,20 @@ public class QueryCommunityAPITest {
 		Assertions
 			.assertEquals(
 				35, community.getProviders().stream().filter(p -> p.getSelectionConstraints() == null).count());
+
+	}
+
+	@Test
+	void eutopiaCommunityConfiguration() throws Exception {
+		CommunityConfiguration cc = Utils.getCommunityConfiguration(true);
+		System.out.println(cc.getCommunities().keySet());
+		Community community = cc.getCommunities().get("eutopia");
+		community.getProviders().forEach(p -> System.out.println(p.getOpenaireId()));
 	}
 
 	@Test
 	void getCommunityProjects() throws Exception {
-		CommunityEntityMap projectMap = Utils.getCommunityProjects();
+		CommunityEntityMap projectMap = Utils.getCommunityProjects(true);
 		Assertions.assertFalse(projectMap.containsKey("mes"));
 		Assertions.assertEquals(33, projectMap.size());
 		Assertions

dhp-workflows/dhp-enrichment/src/test/java/eu/dnetlib/dhp/resulttocommunityfromorganization/ResultToCommunityJobTest.java

@@ -78,7 +78,7 @@ public class ResultToCommunityJobTest {
 						.getResource("/eu/dnetlib/dhp/resulttocommunityfromorganization/sample")
 						.getPath(),
 					"-hive_metastore_uris", "",
-					"-saveGraph", "true",
+
 					"-resultTableName", "eu.dnetlib.dhp.schema.oaf.Dataset",
 					"-outputPath", workingDir.toString() + "/dataset",
 					"-preparedInfoPath", preparedInfoPath