sabeel
/
dnet-hadoop
forked from D-Net/dnet-hadoop
1
0
Fork 0
Code Pull Requests Activity
4,829 Commits 55 Branches 18 Tags 649 MiB
Commit Graph

4029 Commits

Author SHA1 Message Date
dimitrispie a94a54a2d0 Changes for tables and creation of the new indicator indi_is_result_accessible 
- Drop table statements for all tables to avoid duplicates in case of wf rerun
- Add pdfsaggregated step to create the indi_is_result_accessible table. This step is executed on the new impala cluster only, since the pdfaggregation_i is updated on this cluster.
 2023-11-15 14:32:18 +02:00
Miriam Baglioni eaf0a702de - 2023-11-14 14:53:34 +01:00
Sandro La Bruzzo 6ce36b3e41 Implemented ORCID Workflow on DHP-Aggregation for retrieving ORCID DUMP and generating tables 2023-11-14 12:04:29 +01:00
dimitrispie d524e30866 Changes to actionsets 
Resolve comments from
D-Net/dnet-hadoop#355
 2023-11-14 09:46:52 +02:00
Miriam Baglioni 5bc97615d5 - 2023-11-03 15:35:10 +01:00
Miriam Baglioni 7b1e34f159 refactoring 2023-11-03 15:30:01 +01:00
Miriam Baglioni 638ad9e74f changing test for new implementation 2023-11-03 15:06:50 +01:00
Miriam Baglioni edcb17ca98 refactoring and test 2023-11-03 13:01:14 +01:00
Miriam Baglioni 937ff6a7c7 - 2023-10-31 15:56:08 +01:00
Miriam Baglioni a737dd47b6 removed not needed test class 2023-10-31 15:54:49 +01:00
Miriam Baglioni c80b768af0 test for project propagation 2023-10-31 15:49:42 +01:00
Miriam Baglioni e9a20fc8f6 mergin with branch beta 2023-10-31 14:36:03 +01:00
Claudio Atzori 262d7c581b [graph cleaning] implemented further suggestions from https://support.openaire.eu/issues/8898 2023-10-31 14:34:10 +01:00
Serafeim Chatzopoulos 2090003ea9 Adjust tests to new WF input params 2023-10-26 13:47:06 -07:00
Serafeim Chatzopoulos a82aaf57b2 Renaming input param for crossref input path 2023-10-25 12:05:02 -07:00
Claudio Atzori b3a61ea955 Merge branch 'beta' into url_validation 2023-10-25 14:22:56 +02:00
dimitrispie 89c4dfbaf4 StatsDB workflow to export actionsets about OA routes, diamond, and publicly-funded 
A new oozie workflow capable to read from the stats db to produce a new actionSet for updating results with:
- green_oa ={true, false}
- openAccesColor = {gold, hybrid, bronze}
- in_diamond_journal={true, false}
- publicly_funded={true, false}

Inputs:

- outputPath
- statsDB
 2023-10-24 09:48:23 +03:00
Claudio Atzori 7fc621cdec added defaults to the graph resolution workflow config-default.xml 2023-10-20 22:28:12 +02:00
Serafeim Chatzopoulos aad5982bf1 Change the description of the workflow 2023-10-20 12:48:21 +03:00
Miriam Baglioni a4214ced1e fixing issue on propagation organization. added --config to workflow definition. added oozie_app to communtiy project 2023-10-20 10:14:20 +02:00
Serafeim Chatzopoulos 6b19dcee80 Add actionset creation for pubmed affiliations 2023-10-19 19:58:25 +03:00
Claudio Atzori 2b9d0416ec [graph raw] URL Validator to accept double slashes 2023-10-19 16:26:37 +02:00
Claudio Atzori b0fed1725e avoid NPEs 2023-10-19 12:13:45 +02:00
Miriam Baglioni f1b898c6b4 mergin with branch beta 2023-10-19 09:04:35 +02:00
Claudio Atzori 6dfcd0c9a2 [raw graph] mapping original resource types 2023-10-16 12:57:18 +02:00
Claudio Atzori 39d24d5469 Merge branch 'beta' into resource_types 2023-10-16 11:56:38 +02:00
Sandro La Bruzzo a5a89a702f new spark parrameter updated 2023-10-16 11:46:12 +02:00
Miriam Baglioni 159388f9c2 testing and fix some issues 2023-10-16 11:26:07 +02:00
Claudio Atzori 03670bb9ce [dedup] use common saveParquet and save methods to ensure outputs are compressed 2023-10-16 10:55:47 +02:00
Claudio Atzori 54fbf09ac6 [raw graph] WIP: mapping original resource types 2023-10-16 08:57:47 +02:00
Claudio Atzori 6cf64d5d8b [SWH] renamed 'Software Heritage Identifier' to 'Software Hash Identifier' 2023-10-13 10:09:26 +02:00
Claudio Atzori 76447958bb cleanup & docs 2023-10-12 12:23:20 +02:00
Claudio Atzori dda602fff7 [AMF] docs 2023-10-12 10:05:46 +02:00
Miriam Baglioni 8e9493fad9 mergin with branch beta 2023-10-11 18:18:09 +02:00
Miriam Baglioni 89184d5b4f used the API instead of the IS for bulktagging and propagation for community through organization. Added a new propagation step for communities through projects. Still using the API and not the IS 2023-10-11 18:17:35 +02:00
Claudio Atzori 554551682d [raw graph] adopting the new COAR based vocabularies for the resource typing 2023-10-11 16:09:19 +02:00
Claudio Atzori a460ebe215 [UnresolvedEntities] updated action name 2023-10-10 15:50:11 +02:00
Claudio Atzori 66064e99fe Merge branch 'beta' into fos 2023-10-10 15:07:21 +02:00
Miriam Baglioni a431b04814 leftover for the properties and removal of bipfinder 2023-10-10 12:53:57 +02:00
Claudio Atzori ed9282ef2a removed module dhp-stats-monitor-update 2023-10-10 09:52:03 +02:00
Miriam Baglioni 110ce4b40f extend the fos model to include the level4 and the scores for level3 and level4. removed bip indicators from the instance 2023-10-10 09:46:40 +02:00
Claudio Atzori 204404b0e3 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-10-10 09:36:13 +02:00
Claudio Atzori 9a98f408b3 code formatting 2023-10-10 09:36:11 +02:00
Claudio Atzori 4e6fccf4f6 Merge pull request 'Beta stats wf updated' (#332) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#332
 2023-10-10 09:35:32 +02:00
Miriam Baglioni a3d01ccb24 refactoring 2023-10-09 14:52:17 +02:00
Miriam Baglioni 8448b9ebfb mergin with branch beta 2023-10-09 14:27:23 +02:00
Miriam Baglioni 3d6be20989 changes to use the API instead of the IS the get the information for the communities to be used during bulktagging and context propagation 2023-10-09 14:26:33 +02:00
dimitrispie 17586f0ff8 Update step20-createMonitorDB.sql 
Add result_orcid table to monitor dbs
 2023-10-09 14:21:31 +03:00
dimitrispie 489a082f04 Update step16-createIndicatorsTables.sql 
Change scripts for gold, hybrid, bronze indicators
 2023-10-09 14:00:50 +03:00
Claudio Atzori ef833840c3 [Doiboost] removed linkage to SFI unidentified project 2023-10-06 15:48:18 +02:00
Claudio Atzori 84a58802ab [OC] using the common pid cleaning function 2023-10-06 14:48:05 +02:00
Claudio Atzori 46034630cf [OC] compress the output actionset 2023-10-06 14:42:02 +02:00
Claudio Atzori 3bc44fbf1d Merge branch 'beta' into irish_funder 2023-10-06 14:26:41 +02:00
Claudio Atzori 3c23d5f9bc Merge branch 'beta' into SWH_integration 2023-10-06 14:15:38 +02:00
Claudio Atzori 858931ccb6 [SWH] compress the output actionset 2023-10-06 14:03:33 +02:00
Claudio Atzori f759b18bca [SWH] aligned parameter name 2023-10-06 13:43:20 +02:00
Claudio Atzori eed9fe0902 code formatting 2023-10-06 12:31:17 +02:00
Claudio Atzori 73c49b8d26 Merge branch 'beta' into SWH_integration 2023-10-06 12:21:51 +02:00
Sandro La Bruzzo 42a2dad975 implemented relation to irish funder from a Json list 2023-10-06 11:52:33 +02:00
Serafeim Chatzopoulos 1bb83b9188 Add prefix in SWH ID 2023-10-04 20:31:45 +03:00
Claudio Atzori ee8a39e7d2 cleanup and refinements 2023-10-04 12:32:05 +02:00
Serafeim Chatzopoulos e9f24df21c Move SWH API Key from constants to workflow param 2023-10-03 20:57:57 +03:00
Serafeim Chatzopoulos cae75fc75d Add SWH in the collectedFrom field 2023-10-03 16:55:10 +03:00
Serafeim Chatzopoulos b49a3ac9b2 Add actionsetsPath as a global WF param 2023-10-03 15:43:38 +03:00
Serafeim Chatzopoulos 24c43e0c60 Restructure workflow parameters 2023-10-03 15:11:58 +03:00
Serafeim Chatzopoulos 9f73d93e62 Add param for limiting repo Urls 2023-10-03 14:39:08 +03:00
Claudio Atzori 5919e488dd Merge branch 'beta' into importpoci 2023-10-03 10:43:53 +02:00
Serafeim Chatzopoulos 839a8524e7 Add action for creating actionsets 2023-10-02 23:50:38 +03:00
Miriam Baglioni d7fccdc64b fixed paths in wf to match the req of the pathname 2023-10-02 14:10:57 +02:00
Miriam Baglioni 9898470b0e Addressing comments in D-Net/dnet-hadoop#340\#issuecomment-10592 2023-10-02 12:54:16 +02:00
Claudio Atzori 7b403a920f Merge branch 'beta' into consistency_keep_mergerels 2023-10-02 11:26:00 +02:00
Claudio Atzori dc86018a5f Merge branch 'merge_entities_job' into beta 2023-10-02 11:24:48 +02:00
Claudio Atzori 7f244d9a7a code formatting 2023-10-02 11:04:36 +02:00
Giambattista Bloisi e239b81740 Fix defect #8997: GenerateEventsJob is generating huge amounts of logs because broker entity similarity calculation consistently failed 2023-10-02 11:04:18 +02:00
Miriam Baglioni e84f5b5e64 extended existing codo to accomodate import of POCI from open citation 2023-10-02 09:25:16 +02:00
Serafeim Chatzopoulos ab0d70691c Add step for archiving repoUrls to SWH 2023-09-28 20:56:18 +03:00
Serafeim Chatzopoulos ed9c81a0b7 Add steps to collect last visit data && archive not found repository URLs 2023-09-27 19:00:54 +03:00
Alessia Bardi 0935d7757c Use v5 of the UNIBI Gold ISSN list in test 2023-09-20 15:41:35 +02:00
Alessia Bardi cc7204a089 tests for d4science catalog 2023-09-20 15:38:32 +02:00
dimitrispie 9ef971a146 Update step16-createIndicatorsTables.sql 
Fix int year for:
indi_org_openess_year
indi_org_fairness_year
indi_org_findable_year
 2023-09-19 14:25:42 +03:00
Serafeim Chatzopoulos 9d44418d38 Add collecting software code repository URLs 2023-09-14 18:43:25 +03:00
Serafeim Chatzopoulos 395a4af020 Run CC and RAM sequentieally in dhp-impact-indicators WF 2023-09-13 08:59:40 +02:00
Claudio Atzori 4786aa0e09 added Archive ouverte UNIGE (ETHZ.UNIGENF, opendoar____::1400) to the Datacite hostedBy_map 2023-09-07 11:21:07 +02:00
dimitrispie 5f90cc11e9 Update step16-createIndicatorsTables.sql 
Fix indi_pub_bronze_oa
 2023-09-06 14:14:38 +03:00
Claudio Atzori adec6692ca Merge branch 'beta' into invisible_relations 2023-09-04 16:13:06 +02:00
Claudio Atzori 15666e86a8 added collectedfrom to the affiliation relations imported from Crossref 2023-09-04 15:56:06 +02:00
Claudio Atzori 5b06c9d06f [graph raw] datainfo.invisible set as true only for entities 2023-09-04 15:15:24 +02:00
Serafeim Chatzopoulos 7de0164c26 Fix import of affiliations relations from Crossref 2023-09-04 16:04:41 +03:00
Giambattista Bloisi 2caaaec42d Include SparkCleanRelation logic in SparkPropagateRelation 
SparkPropagateRelation includes merge relations
Revised tests for SparkPropagateRelation
 2023-09-04 11:33:20 +02:00
dimitrispie 964c2f553e Changes in indicators step, monitor step 
- graduatedoctorates for observatory
- result_apc_affiliations table
- new indicators
	indi_is_funder_plan_s
	indi_funder_fairness
	indi_ris_fairness
	indi_funder_openess
	indi_ris_openess
	indi_funder_findable
	indi_ris_findable
	indi_is_project_result_after
- cast year to int in composite indicators
- new institutions
     -- Universidade Católica Portuguesa
     -- Iscte - Instituto Universitário de Lisboa
     -- Munster Technological University
     -- Cardiff University
     -- Leibniz Institute of Ecological Urban and Regional Development
 2023-09-01 10:57:02 +03:00
Giambattista Bloisi 6cc7d8ca7b GroupEntities and DispatchEntites are now merged in GroupEntitiesSparkJob 2023-08-30 10:43:31 +02:00
Giambattista Bloisi 6b1c05d118 Add sparkExecutorMemoryOverhead workflow config to set off-heap memory for Spark actions. If not explicitly set it is defaulted to 1Gb 2023-08-29 16:04:19 +02:00
Claudio Atzori bf35280ea6 code formatting 2023-08-29 11:11:00 +02:00
Claudio Atzori 58665a246c Merge branch 'beta' into propagate_relation_rewrite 2023-08-29 10:47:02 +02:00
Claudio Atzori f437be80ad [impact indicators] adjusted paths in the bip ranker wf parameters 2023-08-29 09:03:03 +02:00
Giambattista Bloisi d012aec0b3 Revert PropagateRelation's argument name from outputPath to graphOutputPath in consistency workflow (#8964) 2023-08-28 22:44:54 +02:00
Giambattista Bloisi a860e19423 Fix ensure all relations are written out, not only those managed by dedup 2023-08-28 15:36:02 +02:00
Giambattista Bloisi 0d7b2bf83d Rewrite SparkPropagateRelation exploiting Dataframe API 2023-08-28 10:34:54 +02:00
Miriam Baglioni 9c8b41475a Merge pull request '8172_impact_indicators_workflow' (#284) from 8172_impact_indicators_workflow into beta 
Reviewed-on: D-Net/dnet-hadoop#284
 2023-08-14 15:50:48 +02:00
Serafeim Chatzopoulos 97c1ba8918 Merge actionsets of results and projects 2023-08-11 15:56:53 +03:00