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46 Commits

Author SHA1 Message Date
Roberto Cirillo 1350c8318d Update 'pom.xml'
restore maen-parent version
2024-04-05 11:33:17 +02:00
Roberto Cirillo 8c173c6413 Update 'pom.xml'
change maven-parent version just for test
2024-04-05 11:32:29 +02:00
Francesco Mangiacrapa ca455477f5 Upgraded gcube-smartgears-bom version at 2.4.0 2023-04-04 14:54:32 +02:00
Francesco Mangiacrapa ded177fa55 removed -SNAPSHOT to be released 2023-03-28 12:34:33 +02:00
Francesco Mangiacrapa e5280ee127 Merge pull request 'task_24792' (!7) from task_24792 into master
Reviewed-on: #7
2023-03-28 12:30:19 +02:00
Francesco Mangiacrapa 5d793b8500 Removed unused imports 2023-03-28 12:27:25 +02:00
Francesco Mangiacrapa ca398b5f82 Updated comment 2023-03-28 12:27:02 +02:00
Francesco Mangiacrapa 40e13d9c81 Updated method `resolveDataViewerLink` 2023-03-27 15:46:44 +02:00
Francesco Mangiacrapa 312f9c9fa8 Updated logs 2023-03-27 10:58:45 +02:00
Francesco Mangiacrapa 4864094ed0 Added new method `createDataViewerLink` 2023-03-27 10:55:08 +02:00
Francesco Mangiacrapa b2ec64c828 Updated Java Doc 2023-03-24 16:30:56 +01:00
Francesco Mangiacrapa 30d702a073 Updated Java Doc 2023-03-24 16:26:38 +01:00
Francesco Mangiacrapa 4ba61bf232 Paths Updated 2023-03-24 16:05:02 +01:00
Francesco Mangiacrapa d4862b88d6 Updated Paths 2023-03-24 15:54:40 +01:00
Francesco Mangiacrapa de4b608051 Updated the paths 2023-03-24 15:42:11 +01:00
Francesco Mangiacrapa 9b1f34312e Updated paths 2023-03-24 15:20:00 +01:00
Francesco Mangiacrapa 526a877b26 Updated path 2023-03-24 15:10:43 +01:00
Francesco Mangiacrapa 0b23748a3b Updated Paths 2023-03-24 15:03:22 +01:00
Francesco Mangiacrapa 0b7ca3d03f Updated paths 2023-03-24 14:54:23 +01:00
Francesco Mangiacrapa b57bd03889 Updated paths 2023-03-24 14:47:32 +01:00
Francesco Mangiacrapa f6004df3db Updated Paths 2023-03-24 14:00:24 +01:00
Francesco Mangiacrapa a70c7b5f10 Static Paths 2023-03-24 12:28:57 +01:00
Francesco Mangiacrapa df02f4aa27 updated paths 2023-03-24 12:15:06 +01:00
Francesco Mangiacrapa 31fe390044 Updated paths 2023-03-24 12:00:31 +01:00
Francesco Mangiacrapa 0f57f7365f Updated Paths 2023-03-24 11:52:21 +01:00
Francesco Mangiacrapa 8a2fd1d67a Changed path 2023-03-24 11:47:27 +01:00
Francesco Mangiacrapa 7aa6c479a1 Updated paths 2023-03-24 11:43:30 +01:00
Francesco Mangiacrapa 5ca0406997 updated paths 2023-03-24 11:36:21 +01:00
Francesco Mangiacrapa ad9bd54412 Updated paths and behaviour 2023-03-24 11:31:22 +01:00
Francesco Mangiacrapa 011f57cb25 fixing GET request PATHs 2023-03-24 10:55:34 +01:00
Francesco Mangiacrapa 49fc47eafa Fixing Geoportal Path 2023-03-24 10:46:52 +01:00
Francesco Mangiacrapa 7c0928b1e9 Fixing post request 2023-03-24 10:35:59 +01:00
Francesco Mangiacrapa c6694cd856 Updated Geoportal Resolver 2023-03-24 09:49:57 +01:00
Francesco Mangiacrapa 1107c69b47 Fixed logs 2023-03-23 17:24:09 +01:00
Francesco Mangiacrapa 28ce7ae589 Updated Get resolve 2023-03-23 17:15:18 +01:00
Francesco Mangiacrapa b1e3dc5dbc Fixed Geoportal Get Request. 2023-03-23 16:52:08 +01:00
Francesco Mangiacrapa be8f8755ac Moved Builder to lombok 1.18.4 2023-03-23 16:32:45 +01:00
Francesco Mangiacrapa 59f97bc752 added `lombok` 1.18.4 FOR BUILDING towards JDK_11 2023-03-23 16:04:23 +01:00
Francesco Mangiacrapa 55a8e4001e added `jaxb-api` for building towards JDK_11 2023-03-23 16:01:17 +01:00
Francesco Mangiacrapa fc72fe1029 First version of Geoportal Resolver 2023-03-23 15:54:00 +01:00
Francesco Mangiacrapa 6a6f013689 Added Test classes 2023-03-17 14:30:11 +01:00
Francesco Mangiacrapa 938fff31fb fixing issue #24314 2022-12-15 12:37:59 +01:00
Francesco Mangiacrapa 8447d7c537 Removed -SNAPSHOT to be released 2022-06-13 15:12:42 +02:00
Francesco Mangiacrapa d5a131dab6 Added -SNAPSHOT for deploying it in DEV 2022-06-13 15:08:50 +02:00
Francesco Mangiacrapa 4113507376 Removed -SNAPSHOT to be released 2022-06-13 15:04:04 +02:00
Francesco Mangiacrapa c1abd152e3 Merged manually with feature_23156
#6
2022-06-13 14:57:20 +02:00
35 changed files with 2972 additions and 195 deletions

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@ -24,16 +24,16 @@
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.m2e.MAVEN2_CLASSPATH_CONTAINER">
<attributes>
<attribute name="maven.pomderived" value="true"/>
<attribute name="org.eclipse.jst.component.dependency" value="/WEB-INF/lib"/>
</attributes>
</classpathentry>
<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER/org.eclipse.jdt.internal.debug.ui.launcher.StandardVMType/JavaSE-1.8">
<attributes>
<attribute name="maven.pomderived" value="true"/>
</attributes>
</classpathentry>
<classpathentry kind="output" path="target/classes"/>
</classpath>

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@ -1,70 +1,4 @@
<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
<wb-module deploy-name="uri-resolver-2.7.3">
<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
<dependent-module archiveName="uri-resolver-manager-1.5.0.jar" deploy-path="/WEB-INF/lib" handle="module:/resource/uri-resolver-manager/uri-resolver-manager">
<dependency-type>uses</dependency-type>
</dependent-module>
<property name="context-root" value="uri-resolver"/>
<property name="java-output-path" value="/uri-resolver/target/classes"/>
@ -73,8 +7,143 @@
<wb-module deploy-name="uri-resolver-2.9.0">
<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
<property name="context-root" value="uri-resolver"/>
<property name="java-output-path" value="/uri-resolver/target/classes"/>
</wb-module>

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@ -4,11 +4,26 @@
All notable changes to this project will be documented in this file.
This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
## [v2.7.3] - 2022-04-27
## [v2.9.0]
- GeoPortal-Resolver implemented [#24792]
## [v2.8.1] - 2022-06-13
**New**
- [#23156] CatalogueResolver enhanced to manage (create/resolve) an input query string
**Bug Fixing**
- [#23213] Fixing NoClassDefFoundError: org/geotoolkit/xml/XML
- [#23495] Removed the check on the gcube token stored in thread local. The working context of VRE will be checked from ScopeProvider
## [v2.7.3-SNAPSHOT] - 2022-04-27
**Bug Fixing**
- [#23213] Fixed NoClassDefFoundError: org/geotoolkit/xml/XML
## [v2.7.2] - 2022-04-06

29
pom.xml
View File

@ -9,7 +9,7 @@
</parent>
<groupId>org.gcube.data.transfer</groupId>
<artifactId>uri-resolver</artifactId>
<version>2.7.3</version>
<version>2.9.0</version>
<packaging>war</packaging>
<description>The URI Resolver is an HTTP URI resolver implemented as a REST service which gives access trough HTTP to different gcube Resolvers and gCube Applications.</description>
@ -31,7 +31,7 @@
<dependency>
<groupId>org.gcube.distribution</groupId>
<artifactId>gcube-smartgears-bom</artifactId>
<version>2.1.0</version>
<version>2.4.0</version>
<type>pom</type>
<scope>import</scope>
</dependency>
@ -193,6 +193,22 @@
<version>1.14.8</version>
</dependency>
<!-- FOR BUILDING towards JDK_11 -->
<dependency>
<groupId>javax.xml.bind</groupId>
<artifactId>jaxb-api</artifactId>
<version>2.3.0</version>
<scope>provided</scope>
</dependency>
<!-- FOR BUILDING towards JDK_11 -->
<dependency>
<groupId>org.projectlombok</groupId>
<artifactId>lombok</artifactId>
<version>1.18.4</version>
<scope>provided</scope>
</dependency>
<!-- GIS RESOLVER DEPENDENCIES -->
<dependency>
@ -202,6 +218,15 @@
<scope>compile</scope>
</dependency>
<!-- THIS ONE IS NOT A DIRECT DEPENDENCY OF URI-RESOLVER IT IS REQUIRED
TO BUILD -->
<dependency>
<groupId>org.opengis</groupId>
<artifactId>geoapi</artifactId>
<version>3.0.1</version>
<scope>provided</scope>
</dependency>
<dependency>
<groupId>commons-lang</groupId>
<artifactId>commons-lang</artifactId>

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@ -5,15 +5,14 @@ package org.gcube.datatransfer.resolver.catalogue;
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Mar 24, 2022
*
* Binding Catalogue Request as a JSON
* Apr 20, 2022
*/
public class CatalogueRequest {
private String gcube_scope;
private String entity_context;
private String entity_name;
private String query_string;
/**
* Gets the gcube_scope.
@ -42,19 +41,22 @@ public class CatalogueRequest {
return entity_name;
}
/**
* Gets the query string.
*
* @return the query string
*/
public String getQuery_string() {
return query_string;
}
/**
* To string.
*
* @return the string
*/
/*
* (non-Javadoc)
*
* @see java.lang.Object#toString()
*/
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("CatalogueRequest [gcube_scope=");
builder.append(gcube_scope);
@ -62,6 +64,8 @@ public class CatalogueRequest {
builder.append(entity_context);
builder.append(", entity_name=");
builder.append(entity_name);
builder.append(", query_string=");
builder.append(query_string);
builder.append("]");
return builder.toString();
}

View File

@ -3,35 +3,34 @@
*/
package org.gcube.datatransfer.resolver.catalogue;
import java.util.ArrayList;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
/**
* The Enum ResourceCatalogueCodes.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
* Jan 31, 2017
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it Jan 31, 2017
*
* see wiki page: https://wiki.gcube-system.org/gcube/URI_Resolver#CATALOGUE_Resolver
* see wiki page:
* https://wiki.gcube-system.org/gcube/URI_Resolver#CATALOGUE_Resolver
*/
public enum ResourceCatalogueCodes {
CTLG("ctlg","dataset", "Catalogue Product/Dataset"),
//CTLGP("ctlg-p","product", "Catalogue Product"),
CTLGD("ctlg-d","dataset", "Catalogue Dataset"),
CTLGO("ctlg-o","organization", "Catalogue Organization"),
CTLGG("ctlg-g","group", "Catalogue Group");
CTLG("ctlg", "dataset", "Catalogue Product/Dataset"),
// CTLGP("ctlg-p","product", "Catalogue Product"),
CTLGD("ctlg-d", "dataset", "Catalogue Dataset"), CTLGO("ctlg-o", "organization", "Catalogue Organization"),
CTLGG("ctlg-g", "group", "Catalogue Group");
private String id; //the code id
private String value; //the code value
private String id; // the code id
private String value; // the code value
private String description;
/**
* Instantiates a new resource catalogue codes.
*
* @param id the id
* @param value the value
* @param id the id
* @param value the value
* @param description the description
*/
private ResourceCatalogueCodes(String id, String value, String description) {
@ -50,7 +49,6 @@ public enum ResourceCatalogueCodes {
return id;
}
/**
* Gets the value.
*
@ -61,7 +59,6 @@ public enum ResourceCatalogueCodes {
return value;
}
/**
* Gets the description.
*
@ -72,40 +69,37 @@ public enum ResourceCatalogueCodes {
return description;
}
/**
* Codes.
*
* @return the list
*/
public static List<String> codes(){
public static List<String> codes() {
List<String> codes = new ArrayList<String>(ResourceCatalogueCodes.values().length);
for (ResourceCatalogueCodes value : ResourceCatalogueCodes.values()) {
codes.add(value.getId());
}
return codes;
return Arrays.asList(ResourceCatalogueCodes.values()).stream().map(ResourceCatalogueCodes::getId)
.collect(Collectors.toList());
}
/**
* Value of code id.
*
* @param id the id
* @return the resource catalogue codes
*/
public static ResourceCatalogueCodes valueOfCodeId(String id){
if(id==null || id.isEmpty())
public static ResourceCatalogueCodes valueOfCodeId(String id) {
if (id == null || id.isEmpty())
return null;
for (ResourceCatalogueCodes value : ResourceCatalogueCodes.values()) {
if(value.id.compareTo(id)==0)
return value;
}
return null;
}
List<ResourceCatalogueCodes> codes = Arrays.asList(ResourceCatalogueCodes.values()).stream()
.filter(r -> r.getId().compareTo(id) == 0)
.collect(Collectors.toList());
if (codes == null || codes.isEmpty())
return null;
return codes.get(0);
}
/**
* Value of code value.
@ -113,14 +107,17 @@ public enum ResourceCatalogueCodes {
* @param codeValue the code value
* @return the resource catalogue codes
*/
public static ResourceCatalogueCodes valueOfCodeValue(String codeValue){
if(codeValue==null || codeValue.isEmpty())
public static ResourceCatalogueCodes valueOfCodeValue(String codeValue) {
if (codeValue == null || codeValue.isEmpty())
return null;
for (ResourceCatalogueCodes rcc : ResourceCatalogueCodes.values()) {
if(rcc.value.compareTo(codeValue)==0)
return rcc;
}
return null;
List<ResourceCatalogueCodes> codes = Arrays.asList(ResourceCatalogueCodes.values()).stream()
.filter(r -> r.getValue().compareTo(codeValue) == 0)
.collect(Collectors.toList());
if (codes == null || codes.isEmpty())
return null;
return codes.get(0);
}
}

View File

@ -94,12 +94,12 @@ public class CatalogueStaticConfigurations{
if(toPrivateCKANCatalogueURL.startsWith(prefix)) {
toPrivateCKANCatalogueURL = toPrivateCKANCatalogueURL.replaceFirst(prefix, ""); //removing prefix
String catalogueName = toPrivateCKANCatalogueURL.substring(0,toPrivateCKANCatalogueURL.indexOf(".d4science"));
LOG.info("Catalogue Name extration returning value: "+catalogueName);
LOG.info("Catalogue Name extraction returning value: "+catalogueName);
return catalogueName;
}
}
LOG.info("Catalogue Name extration returning null");
LOG.info("Catalogue Name extraction returning null");
return null;
}

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@ -0,0 +1,17 @@
package org.gcube.datatransfer.resolver.geoportal;
/**
* The Class GeoportalCommonConstants.
*
* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
*
* Dec 1, 2020
*/
public class GeoportalCommonConstants {
public static final String GET_GEONA_ITEM_TYPE = "git";
public static final String GET_GEONA_ITEM_ID = "gid";
public static final String GEOPORTAL_DATA_VIEWER_APP = "geoportal-data-viewer-app";
}

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@ -0,0 +1,75 @@
package org.gcube.datatransfer.resolver.geoportal;
import java.io.Serializable;
/**
* The Class GeoportalDataViewerConfigProfile.
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Dec 21, 2021
*/
public class GeoportalDataViewerConfigProfile implements Serializable {
/**
*
*/
private static final long serialVersionUID = 2968334957258327191L;
private String restrictedPortletURL;
private String openPortletURL;
/**
* Instantiates a new geo na data viewer profile.
*/
public GeoportalDataViewerConfigProfile() {
}
/**
* Gets the restricted portlet URL.
*
* @return the restricted portlet URL
*/
public String getRestrictedPortletURL() {
return restrictedPortletURL;
}
/**
* Sets the restricted portlet URL.
*
* @param restrictedPortletURL the new restricted portlet URL
*/
public void setRestrictedPortletURL(String restrictedPortletURL) {
this.restrictedPortletURL = restrictedPortletURL;
}
/**
* Gets the open portlet URL.
*
* @return the open portlet URL
*/
public String getOpenPortletURL() {
return openPortletURL;
}
/**
* Sets the open portlet URL.
*
* @param openPortletURL the new open portlet URL
*/
public void setOpenPortletURL(String openPortletURL) {
this.openPortletURL = openPortletURL;
}
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("GeoportalDataViewerConfigProfile [restrictedPortletURL=");
builder.append(restrictedPortletURL);
builder.append(", openPortletURL=");
builder.append(openPortletURL);
builder.append("]");
return builder.toString();
}
}

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@ -0,0 +1,170 @@
package org.gcube.datatransfer.resolver.geoportal;
import static org.gcube.resources.discovery.icclient.ICFactory.client;
import java.io.StringReader;
import java.util.List;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import org.gcube.common.resources.gcore.utils.XPathHelper;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.datatransfer.resolver.applicationprofile.ApplicationProfileNotFoundException;
import org.gcube.resources.discovery.client.api.DiscoveryClient;
import org.gcube.resources.discovery.client.queries.api.Query;
import org.gcube.resources.discovery.client.queries.impl.QueryBox;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.xml.sax.InputSource;
/**
* The Class GeoportalDataViewerConfigProfileReader.
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Mar 23, 2023
*/
public class GeoportalDataViewerConfigProfileReader {
private static final String RESOURCE_PROFILE_BODY = "/Resource/Profile/Body";
public static final String SECONDARY_TYPE = "ApplicationProfile";
public static final String GENERIC_RESOURCE_NAME = "Geoportal-DataViewer-Configs";
private static Logger LOG = LoggerFactory.getLogger(GeoportalDataViewerConfigProfileReader.class);
private String secondaryType;
private String scope;
private String appID;
private GeoportalDataViewerConfigProfile geoportalDataViewerConfigProfile;
/**
* Instantiates a new geoportal data viewer config profile reader.
*
* @param appID the app ID
* @throws Exception the exception
*/
public GeoportalDataViewerConfigProfileReader(String appID) throws Exception {
this.appID = appID;
this.secondaryType = SECONDARY_TYPE;
this.scope = ScopeProvider.instance.get();
this.geoportalDataViewerConfigProfile = readProfileFromInfrastructure();
}
/**
* Read profile from infrastrucure.
*
* @return the map
* @throws Exception the exception
*/
private GeoportalDataViewerConfigProfile readProfileFromInfrastructure() throws Exception {
String queryString = getGcubeGenericQueryString(secondaryType, appID);
LOG.info("Scope " + scope + ", trying to perform query: " + queryString);
try {
if (scope == null)
throw new Exception("Scope is null, set scope into ScopeProvider");
GeoportalDataViewerConfigProfile profile = new GeoportalDataViewerConfigProfile();
LOG.info("Trying to fetch ApplicationProfile in the scope: " + scope + ", SecondaryType: " + secondaryType
+ ", AppId: " + appID);
Query q = new QueryBox(queryString);
DiscoveryClient<String> client = client();
List<String> appProfile = client.submit(q);
// String item_fields = "";
if (appProfile == null || appProfile.size() == 0)
throw new ApplicationProfileNotFoundException("ApplicationProfile with SecondaryType: " + secondaryType
+ ", AppId: " + appID + " is not registered in the scope: " + scope);
else {
String elem = appProfile.get(0);
DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
Document doc = docBuilder.parse(new InputSource(new StringReader(elem)));
XPathHelper helper = new XPathHelper(doc.getDocumentElement());
List<String> currValue = null;
String xPathExp = RESOURCE_PROFILE_BODY + "/RestrictedPortletURL/text()";
currValue = helper.evaluate(xPathExp);
if (currValue != null && currValue.size() > 0) {
profile.setRestrictedPortletURL(currValue.get(0));
} else
throw new Exception("I'm not able to read the path: " + xPathExp);
xPathExp = RESOURCE_PROFILE_BODY + "/OpenPortletURL/text()";
currValue = helper.evaluate(xPathExp);
if (currValue != null && currValue.size() > 0) {
profile.setOpenPortletURL(currValue.get(0));
} else
throw new Exception("I'm not able to read the path: " + xPathExp);
LOG.info("returning: " + profile);
return profile;
}
} catch (Exception e) {
LOG.error("Error while trying to read the " + SECONDARY_TYPE + " with SecondaryType "
+ GENERIC_RESOURCE_NAME + " from scope " + scope, e);
return null;
} finally {
}
}
public GeoportalDataViewerConfigProfile getGeoportalDataViewerConfigProfile() {
return geoportalDataViewerConfigProfile;
}
/**
* Gets the gcube generic query string.
*
* @param secondaryType the secondary type
* @param appId the app id
* @return the gcube generic query string
*/
public static String getGcubeGenericQueryString(String secondaryType, String appId) {
return "for $profile in collection('/db/Profiles/GenericResource')//Resource "
+ "where $profile/Profile/SecondaryType/string() eq '" + secondaryType
+ "' and $profile/Profile/Body/AppId/string() " + " eq '" + appId + "'" + "return $profile";
}
/**
* Gets the secondary type.
*
* @return the secondary type
*/
public String getSecondaryType() {
return secondaryType;
}
/**
* Gets the scope.
*
* @return the scope
*/
public String getScope() {
return scope;
}
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("GeoportalDataViewerConfigProfileReader [secondaryType=");
builder.append(secondaryType);
builder.append(", scope=");
builder.append(scope);
builder.append(", appID=");
builder.append(appID);
builder.append(", geoportalDataViewerConfigProfile=");
builder.append(geoportalDataViewerConfigProfile);
builder.append("]");
return builder.toString();
}
}

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@ -0,0 +1,40 @@
package org.gcube.datatransfer.resolver.geoportal;
import com.fasterxml.jackson.annotation.JsonProperty;
import lombok.Data;
import lombok.extern.slf4j.Slf4j;
/**
* The Class GeoportalRequest.
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Mar 23, 2023
*/
@Slf4j
@Data
public class GeoportalRequest {
public static final String P_GCUBE_SCOPE = "gcube_scope";
public static final String P_ITEM_TYPE = "item_type";
public static final String P_ITEM_ID = "item_id";
public static final String P_QUERY_STRING = "query_string";
@JsonProperty(P_GCUBE_SCOPE)
private String gcubeScope;
/**
* It is the UCD ID {usecase_id}
*/
@JsonProperty(P_ITEM_TYPE)
private String itemType;
/**
* It is the Project ID {project_id}
*/
@JsonProperty(P_ITEM_ID)
private String itemID;
@JsonProperty(P_QUERY_STRING)
private String queryString;
}

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@ -0,0 +1,121 @@
/**
*
*/
package org.gcube.datatransfer.resolver.geoportal;
import java.util.Arrays;
import java.util.List;
import java.util.stream.Collectors;
import org.gcube.datatransfer.resolver.services.GeoportalResolver;
/**
* The Enum TargetAppGeoportalCodes.
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Mar 24, 2023
*/
public enum TargetAppGeoportalCodes {
GEO_DV(GeoportalResolver.GEO_DV, "data-viewer", "Geoportal Viewer"),
GEO_DE(GeoportalResolver.GEO_DE, "data-entry", "Geoportal Entry");
private String id; // the code id
private String name; // the code value
private String description;
/**
* Instantiates a new resource catalogue codes.
*
* @param id the id
* @param name the target app
* @param description the description
*/
private TargetAppGeoportalCodes(String id, String name, String description) {
this.id = id;
this.name = name;
this.description = description;
}
/**
* Gets the id.
*
* @return the id
*/
public String getId() {
return id;
}
/**
* Gets the target app.
*
* @return the target app
*/
public String getTarget_app() {
return name;
}
/**
* Gets the description.
*
* @return the description
*/
public String getDescription() {
return description;
}
/**
* Codes.
*
* @return the list
*/
public static List<String> codes() {
return Arrays.asList(TargetAppGeoportalCodes.values()).stream().map(TargetAppGeoportalCodes::getId)
.collect(Collectors.toList());
}
/**
* Value of id.
*
* @param id the id
* @return the target app geoportal codes
*/
public static TargetAppGeoportalCodes valueOfId(String id) {
if (id == null || id.isEmpty())
return null;
List<TargetAppGeoportalCodes> codes = Arrays.asList(TargetAppGeoportalCodes.values()).stream()
.filter(value -> value.getId().compareTo(id) == 0).collect(Collectors.toList());
if (codes == null || codes.isEmpty())
return null;
return codes.get(0);
}
/**
* Value of name.
*
* @param name the name
* @return the target app geoportal codes
*/
public static TargetAppGeoportalCodes valueOfName(String name) {
if (name == null || name.isEmpty())
return null;
List<TargetAppGeoportalCodes> codes = Arrays.asList(TargetAppGeoportalCodes.values()).stream()
.filter(value -> value.getTarget_app().compareTo(name) == 0).collect(Collectors.toList());
if (codes == null || codes.isEmpty())
return null;
return codes.get(0);
}
}

View File

@ -43,7 +43,6 @@ import org.gcube.common.storagehub.model.Metadata;
import org.gcube.data.analysis.dminvocation.ActionType;
import org.gcube.data.analysis.dminvocation.DataMinerInvocationManager;
import org.gcube.data.analysis.dminvocation.model.DataMinerInvocation;
import org.gcube.datatransfer.resolver.requesthandler.RequestHandler;
import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
import org.gcube.datatransfer.resolver.services.exceptions.InternalServerException;
import org.gcube.datatransfer.resolver.util.ScopeUtil;
@ -119,20 +118,11 @@ public class AnalyticsCreateResolver {
logger.debug("The body contains the request: " + jsonRequest.toString());
String contextToken = SecurityTokenProvider.instance.get();
String scope = ScopeProvider.instance.get();
// logger.info("SecurityTokenProvider contextToken: "+contextToken);
logger.info("ScopeProvider has scope: " + scope);
String appToken = req.getServletContext().getInitParameter(RequestHandler.ROOT_APP_TOKEN);
if (contextToken.compareTo(appToken) == 0) {
logger.error("Token not passed, SecurityTokenProvider contains the root app token: "
+ appToken.substring(0, 10) + "...");
throw ExceptionManager.unauthorizedException(req,
"You are not authorized. You must pass a token of VRE", this.getClass(), helpURI);
}
String operatorID = jsonRequest.getOperatorId();
if (scope == null || scope.isEmpty()) {
@ -148,8 +138,15 @@ public class AnalyticsCreateResolver {
"Mandatory body parameter 'operatorId' not found or empty in the JSON object", this.getClass(),
helpURI);
}
ScopeBean scopeBean = new ScopeBean(scope);
if (scopeBean.is(Type.INFRASTRUCTURE) || scopeBean.is(Type.VO)) {
logger.error(Type.INFRASTRUCTURE + "or " + Type.VO + " scope detected, you must set a scope of VRE");
throw ExceptionManager.unauthorizedException(req,
"You are not authorized. You must pass a token of VRE", this.getClass(), helpURI);
}
String publicLinkToDMInvFile = "";
if (scopeBean.is(Type.VRE)) {
@ -162,7 +159,8 @@ public class AnalyticsCreateResolver {
File tempInvocationFile = null;
try {
String contextToken = SecurityTokenProvider.instance.get();
String xmlRequest = DataMinerInvocationManager.getInstance().marshalingXML(jsonRequest, true, true);
String uniqueName = createDMInvocationFileName(jsonRequest.getOperatorId());
tempInvocationFile = createTempFile(uniqueName, ".xml", xmlRequest.getBytes());
@ -186,8 +184,9 @@ public class AnalyticsCreateResolver {
StorageHubManagement storageHubManagement = new StorageHubManagement();
Metadata metadata = new Metadata();
Map<String, String> theMap = new HashMap<String, String>();
Map<String, Object> theMap = new HashMap<String, Object>();
theMap.put("owner", owner);
metadata.setMap(theMap);
URL thePublicLink = null;
try {

View File

@ -18,6 +18,7 @@ import javax.ws.rs.core.Context;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;
import org.apache.commons.codec.binary.Base64;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.scope.impl.ScopeBean;
import org.gcube.common.scope.impl.ScopeBean.Type;
@ -111,8 +112,19 @@ public class CatalogueResolver {
}
} else {
itemCatalogueURL = itemCatalogueURLs.getPrivateVRECataloguePortletURL();
logger.info("The dataset " + itemCatalogueURLs.getItemName()
+ " is a private item (to VRE) so using protected access to CKAN portlet: " + itemCatalogueURL);
logger.info("Either the " + itemCatalogueURLs.getItemName()
+ " is not an item (alias dataset) or it is a private item (to VRE) so using protected access to CKAN portlet: "
+ itemCatalogueURL);
}
String queryString = req.getQueryString();
if (queryString != null) {
logger.info("Query string found: " + queryString);
byte[] stringEncBytes = Base64.encodeBase64(queryString.getBytes());
String queryStringEnc = "query_string=" + new String(stringEncBytes);
logger.info("Adding Base64 encoded: " + queryString);
itemCatalogueURL += itemCatalogueURL.contains("?") ? "&" : "?";
itemCatalogueURL += queryStringEnc;
}
return Response.seeOther(new URL(itemCatalogueURL).toURI()).build();
@ -120,7 +132,8 @@ public class CatalogueResolver {
if (!(e instanceof WebApplicationException)) {
// UNEXPECTED EXCEPTION managing it as WebApplicationException
String error = "Error occurred on resolving the Catalgoue URL. Please, contact the support!";
String error = "Error occurred on resolving the " + CatalogueResolver.class.getSimpleName()
+ " URL. Please, contact the support!";
if (e.getCause() != null)
error += "\n\nCaused: " + e.getCause().getMessage();
throw ExceptionManager.internalErrorException(req, error, this.getClass(), helpURI);
@ -190,14 +203,20 @@ public class CatalogueResolver {
}
String linkURL = String.format("%s/%s/%s/%s", serverUrl, rc.getId(), vreName, jsonRequest.getEntity_name());
logger.info("Returining Catalogue URL: " + linkURL);
if (jsonRequest.getQuery_string() != null) {
linkURL += "?" + jsonRequest.getQuery_string();
}
logger.info("Returning " + CatalogueResolver.class.getSimpleName() + " URL: " + linkURL);
return Response.ok(linkURL).header("Location", linkURL).build();
} catch (Exception e) {
if (!(e instanceof WebApplicationException)) {
// UNEXPECTED EXCEPTION managing it as WebApplicationException
String error = "Error occurred on resolving the Analytics URL. Please, contact the support!";
String error = "Error occurred on creating the " + CatalogueResolver.class.getSimpleName()
+ " URL. Please, contact the support!";
throw ExceptionManager.internalErrorException(req, error, this.getClass(), helpURI);
}
// ALREADY MANAGED AS WebApplicationExceptiongetItemCatalogueURLs

View File

@ -0,0 +1,497 @@
package org.gcube.datatransfer.resolver.services;
import java.net.URL;
import java.util.Arrays;
import java.util.List;
import java.util.concurrent.ExecutionException;
import java.util.stream.Collectors;
import javax.servlet.http.HttpServletRequest;
import javax.ws.rs.Consumes;
import javax.ws.rs.GET;
import javax.ws.rs.POST;
import javax.ws.rs.Path;
import javax.ws.rs.PathParam;
import javax.ws.rs.Produces;
import javax.ws.rs.QueryParam;
import javax.ws.rs.WebApplicationException;
import javax.ws.rs.core.Context;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.scope.impl.ScopeBean;
import org.gcube.datatransfer.resolver.ConstantsResolver;
import org.gcube.datatransfer.resolver.caches.LoadingMapOfScopeCache;
import org.gcube.datatransfer.resolver.geoportal.GeoportalCommonConstants;
import org.gcube.datatransfer.resolver.geoportal.GeoportalDataViewerConfigProfile;
import org.gcube.datatransfer.resolver.geoportal.GeoportalDataViewerConfigProfileReader;
import org.gcube.datatransfer.resolver.geoportal.GeoportalRequest;
import org.gcube.datatransfer.resolver.geoportal.TargetAppGeoportalCodes;
import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
import org.gcube.datatransfer.resolver.util.Util;
import org.gcube.smartgears.utils.InnerMethodName;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.google.common.cache.CacheLoader.InvalidCacheLoadException;
/**
* The GeoportalResolver is able to get/resolve a link to "Geoportal Viewer" or
* "Geoportal Entry" Application.
*
* See more at
* https://gcube.wiki.gcube-system.org/gcube/URI_Resolver#Geoportal_Resolver
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Mar 23, 2023
*/
@Path("/geo")
public class GeoportalResolver {
public static final String GEO_DE = "de"; // data-entry
public static final String GEO = "geo"; // geoportal
public static final String GEO_DV = "dv"; // data-viewer
private static final String QP_RESOLVE_AS = "res";
private static final String PATH_PROJECT_ID = "project_id";
private static final String PATH_USECASE_ID = "usecase_id";
private static final String PATH_VRE_NAME = "vre_name";
private static final String PATH_TARGET_APP = "targetAppId";
private static final Logger LOG = LoggerFactory.getLogger(GeoportalResolver.class);
private static String helpURI = "https://wiki.gcube-system.org/gcube/URI_Resolver#Geoportal_Resolver";
/**
* The Enum RESOLVE_AS_PARAMETER.
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Mar 24, 2023
*/
private static enum RESOLVE_AS {
PUBLIC, PRIVATE
}
/**
* Resolve geoportal. Resolve a Geoportal Link to "Data-Viewer" App
*
* @param req the req
* @param vreName the vre name
* @param ucdID the ucd ID
* @param projectID the project ID
* @param resolveAs the resolve as
* @return the response
* @throws WebApplicationException the web application exception
*/
@GET
@Path("/{vre_name}/{usecase_id}/{project_id}")
public Response resolveGeoportalNoAppDef(@Context HttpServletRequest req, @PathParam(PATH_VRE_NAME) String vreName,
@PathParam(PATH_USECASE_ID) String ucdID, @PathParam(PATH_PROJECT_ID) String projectID,
@QueryParam(QP_RESOLVE_AS) String resolveAs) throws WebApplicationException {
LOG.info(this.getClass().getSimpleName() + " resolveGeoportalNoAppDef - GET starts...");
TargetAppGeoportalCodes targetAppGeoportalCodes = checkTargetApplictionID(req, null);
LOG.info("The target app is: " + targetAppGeoportalCodes);
return genericResolveLink(req, targetAppGeoportalCodes, vreName, ucdID, projectID, resolveAs);
}
/**
* Resolve geoportal. Resolve a Geoportal Link to "Data-Viewer" or "Data-Entry"
* App
*
* @param req the req
* @param targetAppId the target app id
* @param vreName the vre name
* @param ucdID the ucd ID
* @param projectID the project ID
* @param resolveAs the resolve as
* @return the response
* @throws WebApplicationException the web application exception
*/
@GET
@Path("/{targetAppId}/{vre_name}/{usecase_id}/{project_id}")
public Response resolveGeoportal(@Context HttpServletRequest req, @PathParam(PATH_TARGET_APP) String targetAppId,
@PathParam(PATH_VRE_NAME) String vreName, @PathParam(PATH_USECASE_ID) String ucdID,
@PathParam(PATH_PROJECT_ID) String projectID, @QueryParam(QP_RESOLVE_AS) String resolveAs)
throws WebApplicationException {
LOG.info(this.getClass().getSimpleName() + " resolveGeoportal - GET starts...");
TargetAppGeoportalCodes targetAppGeoportalCodes = checkTargetApplictionID(req, targetAppId);
LOG.info("The target app is: " + targetAppGeoportalCodes);
return genericResolveLink(req, targetAppGeoportalCodes, vreName, ucdID, projectID, resolveAs);
}
/**
* Resolve data viewer link.
*
* @param req the req
* @param gcubeScope the gcube scope
* @param itemId the item id
* @param itemType the item type
* @param resolveAs the resolve as
* @return the response
* @throws WebApplicationException the web application exception
*/
@GET
@Path("/")
public Response resolveDataViewerLink(@Context HttpServletRequest req,
@QueryParam(GeoportalRequest.P_GCUBE_SCOPE) String gcubeScope,
@QueryParam(GeoportalRequest.P_ITEM_ID) String itemId,
@QueryParam(GeoportalRequest.P_ITEM_TYPE) String itemType,
@QueryParam(QP_RESOLVE_AS) String resolveAs)
throws WebApplicationException {
LOG.info(this.getClass().getSimpleName() + " resolveDataViewerLink - GET starts...");
TargetAppGeoportalCodes targetAppGeoportalCodes = checkTargetApplictionID(req, null);
LOG.info("The target app is: " + targetAppGeoportalCodes);
if (gcubeScope == null || gcubeScope.isEmpty()) {
LOG.error("The query parameter '" + GeoportalRequest.P_GCUBE_SCOPE + "' not found or empty");
throw ExceptionManager.badRequestException(req,
"Mandatory query parameter '" + GeoportalRequest.P_GCUBE_SCOPE + "' not found or empty",
this.getClass(), helpURI);
}
String scope = gcubeScope.substring(gcubeScope.lastIndexOf("/") + 1, gcubeScope.length());
return genericResolveLink(req, targetAppGeoportalCodes, scope, itemType, itemId, resolveAs);
}
/**
* Post geoportal. Create a Geoportal Link to "Data-Viewer" App
*
* @param req the req
* @param jsonRequest the json request
* @return the response
* @throws WebApplicationException the web application exception
*/
@POST
@Path("")
@Consumes(MediaType.APPLICATION_JSON)
@Produces(MediaType.TEXT_PLAIN)
public Response postGeoportalNoAppDef(@Context HttpServletRequest req, GeoportalRequest jsonRequest)
throws WebApplicationException {
LOG.info(this.getClass().getSimpleName() + " postGeoportalNoAppDef - POST starts...");
TargetAppGeoportalCodes targetAppGeoportalCodes = checkTargetApplictionID(req, null);
LOG.info("The target app is: " + targetAppGeoportalCodes);
String linkURL = genericCreateLink(req, jsonRequest, targetAppGeoportalCodes);
return Response.ok(linkURL).header("Location", linkURL).build();
}
/**
* Post geoportal. Create a Geoportal Link to "Data-Viewer" or "Data-Entry" App
*
* @param req the req
* @param targetAppId the target app id
* @param jsonRequest the json request
* @return the response
* @throws WebApplicationException the web application exception
*/
@POST
@Path("/{targetAppId}")
@Consumes(MediaType.APPLICATION_JSON)
@Produces(MediaType.TEXT_PLAIN)
public Response postGeoportal(@Context HttpServletRequest req, @PathParam(PATH_TARGET_APP) String targetAppId,
GeoportalRequest jsonRequest) throws WebApplicationException {
LOG.info(this.getClass().getSimpleName() + " postGeoportal - POST starts...");
TargetAppGeoportalCodes targetAppGeoportalCodes = checkTargetApplictionID(req, targetAppId);
LOG.info("The target app is: " + targetAppGeoportalCodes);
String linkURL = genericCreateLink(req, jsonRequest, targetAppGeoportalCodes);
return Response.ok(linkURL).header("Location", linkURL).build();
}
/**
* Check target appliction ID.
*
* @param req the req
* @param targetAppId the target app id
* @return the target app geoportal codes
*/
private TargetAppGeoportalCodes checkTargetApplictionID(@Context HttpServletRequest req, String targetAppId) {
TargetAppGeoportalCodes targetAppGeoportalCodes = null;
if (targetAppId == null) {
targetAppGeoportalCodes = TargetAppGeoportalCodes.GEO_DV;
LOG.warn("Target application parameter is null, using default: " + targetAppGeoportalCodes);
} else {
// IF the target application passed in the request. It must be proper.
targetAppGeoportalCodes = TargetAppGeoportalCodes.valueOfId(targetAppId);
if (targetAppGeoportalCodes == null) {
LOG.error("Target application parameter is malformed");
List<String> targetApps = Arrays.asList(TargetAppGeoportalCodes.values()).stream()
.map(TargetAppGeoportalCodes::getTarget_app).collect(Collectors.toList());
throw ExceptionManager.badRequestException(req,
"Target application is wrong. It must be one value of: " + targetApps, this.getClass(),
helpURI);
}
}
return targetAppGeoportalCodes;
}
/**
* Generic resolve link.
*
* @param req the req
* @param resoruceGeoportalCodes the resoruce geoportal codes
* @param vreName the vre name
* @param ucdID the ucd ID
* @param projectID the project ID
* @param resolveAs the resolve as
* @return the response
* @throws WebApplicationException the web application exception
*/
public Response genericResolveLink(@Context HttpServletRequest req, TargetAppGeoportalCodes resoruceGeoportalCodes,
@PathParam(PATH_VRE_NAME) String vreName, @PathParam(PATH_USECASE_ID) String ucdID,
@PathParam(PATH_PROJECT_ID) String projectID, @QueryParam(QP_RESOLVE_AS) String resolveAs)
throws WebApplicationException {
LOG.info(this.getClass().getSimpleName() + " genericResolveLink starts...");
try {
InnerMethodName.instance.set("resolveGeoportalPublicLink");
LOG.info("Found target app: " + resoruceGeoportalCodes);
if (resoruceGeoportalCodes == null) {
LOG.error("The path parameter '" + PATH_TARGET_APP + "' not found or empty in the path");
throw ExceptionManager.badRequestException(req,
"Mandatory path parameter '" + PATH_TARGET_APP + "' not found or empty", this.getClass(),
helpURI);
}
if (vreName == null || vreName.isEmpty()) {
LOG.error("The path parameter '" + PATH_VRE_NAME + "' not found or empty in the path");
throw ExceptionManager.badRequestException(req,
"Mandatory path parameter '" + PATH_VRE_NAME + "' not found or empty", this.getClass(),
helpURI);
}
if (ucdID == null) {
LOG.error("The path parameter '" + PATH_USECASE_ID + "' not found or empty in the path");
throw ExceptionManager.badRequestException(req,
"Mandatory path parameter '" + PATH_USECASE_ID + "' not found or empty", this.getClass(),
helpURI);
}
if (projectID == null) {
LOG.error("The path parameter '" + PATH_PROJECT_ID + "' not found or empty in the path");
throw ExceptionManager.badRequestException(req,
"Mandatory path parameter '" + PATH_PROJECT_ID + "' not found or empty", this.getClass(),
helpURI);
}
ScopeBean fullScopeBean = null;
// CHECKING IF THE INPUT VRE NAME IS REGISTRED IN THE INFRASTRUCTURE...
try {
fullScopeBean = LoadingMapOfScopeCache.get(vreName);
} catch (ExecutionException | InvalidCacheLoadException e) {
LOG.error("Error on getting the fullscope from cache for vreName " + vreName, e);
throw ExceptionManager.wrongParameterException(req,
"Error on getting full scope for the VRE name " + vreName
+ ". Is it registered as VRE in the D4Science Infrastructure System?",
this.getClass(), helpURI);
}
RESOLVE_AS resolveTO = RESOLVE_AS.PUBLIC;
if (resolveAs != null) {
switch (resolveAs.toLowerCase()) {
case "public":
resolveTO = RESOLVE_AS.PUBLIC;
break;
case "private":
resolveTO = RESOLVE_AS.PRIVATE;
break;
}
}
LOG.info("Found RESOLVE_AS_PARAMETER: " + resolveAs);
String originalScope = ScopeProvider.instance.get();
GeoportalDataViewerConfigProfileReader reader;
try {
String theScope = fullScopeBean.toString();
LOG.info("Full scope is: " + theScope);
ScopeProvider.instance.set(theScope);
reader = new GeoportalDataViewerConfigProfileReader(
org.gcube.datatransfer.resolver.geoportal.GeoportalCommonConstants.GEOPORTAL_DATA_VIEWER_APP);
} catch (Exception e) {
LOG.error("Error on reading the " + GeoportalDataViewerConfigProfileReader.SECONDARY_TYPE
+ " with generic resource name: "
+ GeoportalDataViewerConfigProfileReader.GENERIC_RESOURCE_NAME, e);
throw ExceptionManager.internalErrorException(req,
"Error on reading the " + GeoportalDataViewerConfigProfileReader.SECONDARY_TYPE + " for name "
+ GeoportalDataViewerConfigProfileReader.GENERIC_RESOURCE_NAME
+ ". Please contact the support",
this.getClass(), helpURI);
} finally {
if (originalScope != null && !originalScope.isEmpty()) {
ScopeProvider.instance.set(originalScope);
LOG.info("scope provider set to orginal scope: " + originalScope);
} else {
ScopeProvider.instance.reset();
LOG.info("scope provider reset");
}
}
// Resolving towards Data-Viewer or Data-Entry Application
String itemLink = null;
switch (resoruceGeoportalCodes) {
case GEO_DV: {
GeoportalDataViewerConfigProfile geonaDataProfile = reader.getGeoportalDataViewerConfigProfile();
switch (resolveTO) {
case PUBLIC:
// Open Link
itemLink = String.format("%s?%s=%s&%s=%s", geonaDataProfile.getOpenPortletURL(),
GeoportalCommonConstants.GET_GEONA_ITEM_ID, projectID,
GeoportalCommonConstants.GET_GEONA_ITEM_TYPE, ucdID);
break;
case PRIVATE:
// Restricted Link
itemLink = String.format("%s?%s=%s&%s=%s", geonaDataProfile.getRestrictedPortletURL(),
GeoportalCommonConstants.GET_GEONA_ITEM_ID, projectID,
GeoportalCommonConstants.GET_GEONA_ITEM_TYPE, ucdID);
break;
default:
break;
}
break;
}
case GEO_DE: {
LOG.error("The Resolver towards '" + resoruceGeoportalCodes + "' not implemented yet");
throw ExceptionManager.internalErrorException(req,
"The Resolver towards '" + resoruceGeoportalCodes + "' not implemented yet", this.getClass(),
helpURI);
}
default:
break;
}
LOG.info("Returning link: " + itemLink);
return Response.seeOther(new URL(itemLink).toURI()).build();
} catch (Exception e) {
if (!(e instanceof WebApplicationException)) {
// UNEXPECTED EXCEPTION managing it as WebApplicationException
String error = "Error occurred on resolving the " + GeoportalResolver.class.getSimpleName()
+ " URL. Please, contact the support!";
if (e.getCause() != null)
error += "\n\nCaused: " + e.getCause().getMessage();
throw ExceptionManager.internalErrorException(req, error, this.getClass(), helpURI);
}
// ALREADY MANAGED AS WebApplicationException
LOG.error("Exception:", e);
throw (WebApplicationException) e;
}
}
/**
* Generic create link.
*
* @param req the req
* @param jsonRequest the json request
* @param targetAppGeoportalCodes the target app geoportal codes
* @return the URL
*/
protected String genericCreateLink(@Context HttpServletRequest req, GeoportalRequest jsonRequest,
TargetAppGeoportalCodes targetAppGeoportalCodes) {
LOG.info(this.getClass().getSimpleName() + " genericCreateLink starts...");
try {
InnerMethodName.instance.set("postGeoportalPublicLink");
LOG.info("The body contains the request: " + jsonRequest.toString());
if (jsonRequest.getGcubeScope() == null) {
throw ExceptionManager.badRequestException(req, "Missing parameter " + GeoportalRequest.P_GCUBE_SCOPE,
this.getClass(), helpURI);
}
if (jsonRequest.getItemID() == null) {
throw ExceptionManager.badRequestException(req, "Missing parameter " + GeoportalRequest.P_ITEM_ID,
this.getClass(), helpURI);
}
if (jsonRequest.getItemType() == null) {
throw ExceptionManager.badRequestException(req, "Missing parameter " + GeoportalRequest.P_ITEM_TYPE,
this.getClass(), helpURI);
}
// CHECK IF INPUT SCOPE IS VALID
String scope = jsonRequest.getGcubeScope();
if (!scope.startsWith(ConstantsResolver.SCOPE_SEPARATOR)) {
LOG.info("Scope not start with char '{}' adding it", ConstantsResolver.SCOPE_SEPARATOR);
scope += ConstantsResolver.SCOPE_SEPARATOR + scope;
}
String serverUrl = Util.getServerURL(req);
final String vreName = scope.substring(scope.lastIndexOf(ConstantsResolver.SCOPE_SEPARATOR) + 1,
scope.length());
ScopeBean fullScope = null;
// CHECK IF THE vreName has a valid scope, so it is a valid VRE
try {
fullScope = LoadingMapOfScopeCache.get(vreName);
} catch (ExecutionException e) {
LOG.error("Error on getting the fullscope from cache for vreName " + vreName, e);
throw ExceptionManager.wrongParameterException(req,
"Error on getting full scope for the VRE name " + vreName
+ ". Is it registered as VRE in the D4Science Infrastructure System?",
this.getClass(), helpURI);
}
if (fullScope == null)
throw ExceptionManager.notFoundException(req,
"The scope '" + scope + "' does not matching any scope in the infrastructure. Is it valid?",
this.getClass(), helpURI);
String linkURL = String.format("%s/%s/%s/%s/%s/%s", serverUrl, GEO, targetAppGeoportalCodes.getId(),
vreName, jsonRequest.getItemType(), jsonRequest.getItemID());
if (jsonRequest.getQueryString() != null) {
linkURL += "?" + jsonRequest.getQueryString();
}
LOG.info("Returning " + GeoportalResolver.class.getSimpleName() + " URL: " + linkURL);
return linkURL;
} catch (Exception e) {
if (!(e instanceof WebApplicationException)) {
// UNEXPECTED EXCEPTION managing it as WebApplicationException
String error = "Error occurred on creating the " + GeoportalResolver.class.getSimpleName()
+ " URL. Please, contact the support!";
throw ExceptionManager.internalErrorException(req, error, this.getClass(), helpURI);
}
// ALREADY MANAGED AS WebApplicationExceptiongetItemCatalogueURLs
LOG.error("Exception:", e);
throw (WebApplicationException) e;
}
}
}

View File

@ -13,11 +13,9 @@ import javax.ws.rs.core.Context;
import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.scope.impl.ScopeBean;
import org.gcube.common.scope.impl.ScopeBean.Type;
import org.gcube.datatransfer.resolver.requesthandler.RequestHandler;
import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
import org.gcube.datatransfer.resolver.util.Util;
import org.slf4j.Logger;
@ -60,22 +58,18 @@ public class KnimeCreateResolver {
logger.info(this.getClass().getSimpleName() + " POST starts...");
try {
String contextToken = SecurityTokenProvider.instance.get();
String scope = ScopeProvider.instance.get();
// logger.info("SecurityTokenProvider contextToken: "+contextToken);
logger.info("ScopeProvider has scope: " + scope);
String appToken = req.getServletContext().getInitParameter(RequestHandler.ROOT_APP_TOKEN);
if (contextToken.compareTo(appToken) == 0) {
logger.error("Token not passed, SecurityTokenProvider contains the root app token: "
+ appToken.substring(0, 10) + "...");
ScopeBean scopeBean = new ScopeBean(scope);
if (scopeBean.is(Type.INFRASTRUCTURE) || scopeBean.is(Type.VO)) {
logger.error(Type.INFRASTRUCTURE + "or " + Type.VO + " scope detected, you must set a scope of VRE");
throw ExceptionManager.unauthorizedException(req,
"You are not authorized. You must pass a token of VRE", this.getClass(), helpURI);
}
ScopeBean scopeBean = new ScopeBean(scope);
if (scopeBean.is(Type.VRE)) {
String vreName = scopeBean.name();

View File

@ -22,12 +22,12 @@ import javax.ws.rs.core.MediaType;
import javax.ws.rs.core.Response;
import org.apache.commons.codec.binary.Base64;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.encryption.StringEncrypter;
import org.gcube.common.resources.gcore.ServiceEndpoint;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.datatransfer.resolver.requesthandler.RequestHandler;
import org.gcube.common.scope.impl.ScopeBean;
import org.gcube.common.scope.impl.ScopeBean.Type;
import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
import org.gcube.datatransfer.resolver.services.exceptions.NotFoundException;
import org.gcube.resources.discovery.client.api.DiscoveryClient;
@ -72,15 +72,12 @@ public class WekeoResolver {
try {
String contextToken = SecurityTokenProvider.instance.get();
String scope = ScopeProvider.instance.get();
logger.info("ScopeProvider has scope: " + scope);
String appToken = req.getServletContext().getInitParameter(RequestHandler.ROOT_APP_TOKEN);
if (contextToken.compareTo(appToken) == 0) {
logger.error("Token not passed, SecurityTokenProvider contains the root app token: "
+ appToken.substring(0, 10) + "...");
ScopeBean scopeBean = new ScopeBean(scope);
if (scopeBean.is(Type.INFRASTRUCTURE) || scopeBean.is(Type.VO)) {
logger.error(Type.INFRASTRUCTURE + "or " + Type.VO + " scope detected, you must set a scope of VRE");
throw ExceptionManager.unauthorizedException(req,
"You are not authorized. You must pass a token of VRE", this.getClass(), helpURI);
}

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@ -9,10 +9,10 @@ import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlType;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Getter;
import lombok.NoArgsConstructor;
import lombok.Setter;
import lombok.experimental.Builder;
@XmlRootElement(name="error")

View File

@ -10,10 +10,10 @@ import javax.xml.bind.annotation.XmlRootElement;
import javax.xml.bind.annotation.XmlType;
import lombok.AllArgsConstructor;
import lombok.Builder;
import lombok.Getter;
import lombok.NoArgsConstructor;
import lombok.Setter;
import lombok.experimental.Builder;
/**

View File

@ -6,6 +6,7 @@
padding: 10px;
background: white;
width: 100%;
height: 100px;
}
.navbar-fixed-top {

View File

@ -0,0 +1,158 @@
package catalogue;
/**
*
*/
import java.io.BufferedWriter;
import java.io.FileWriter;
import java.io.PrintWriter;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.junit.Test;
import resources.GcoreEndpointReader;
import resources.GetAllInfrastructureScopes;
/**
* The Class CatalogueMatching_SCOPE_CKANCONNECTOR.
*
* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
*
* Jun 7, 2022
*/
public class CatalogueMatching_SCOPE_CKANCONNECTOR {
// GN CONFIGURATIONS
static String rootScope = "/d4science.research-infrastructures.eu";
// static String rootScope = "/pred4s";
// static String rootScope = "/gcube";
static LoginLevel loginLevel = LoginLevel.CKAN;
static PrintWriter reportPrintWriter;
static PrintWriter errorPrintWriter;
private static int c = 0;
/**
* Test catalogue discovery.
*
* @throws Exception the exception
*/
@Test
public void testCatalogueDiscovery() throws Exception {
try {
FileWriter reportWriter = new FileWriter(rootScope.substring(1, rootScope.length()) + "_report_"
+ CatalogueMatching_SCOPE_CKANCONNECTOR.class.getSimpleName() + ".csv", true);
FileWriter errorWriter = new FileWriter(rootScope.substring(1, rootScope.length()) + "_error_"
+ CatalogueMatching_SCOPE_CKANCONNECTOR.class.getSimpleName() + ".csv", true);
BufferedWriter reportBW = new BufferedWriter(reportWriter);
BufferedWriter errorBW = new BufferedWriter(errorWriter);
reportPrintWriter = new PrintWriter(reportBW);
reportPrintWriter.println("NB.; SCOPE; CKAN_CONNECTOR_URL;");
errorPrintWriter = new PrintWriter(errorBW);
errorPrintWriter.println("NB.; SCOPE; ERROR MESSAGE;");
} catch (Exception e) {
e.printStackTrace();
}
// final Path destination = Paths.get("report_matching_gn_catalogue.csv");
// Files.w(re, destination);
List<String> scopesProd = new ArrayList<String>();
// RuntimeResourceReader readerRR;
try {
// MODE-1
// readerRR = new RuntimeResourceReader(rootScope, platformName, null);
// System.out.println(readerRR.toString());
// System.out.println("Using GN: "+readerRR.getParameters());
// System.out.println("Scopes are: "+readerRR.getScopes().size());
// scopesProd.addAll(readerRR.getScopes());
// MODE-2
Map<String, String> mapScopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
scopesProd.addAll(mapScopes.values());
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
System.out.println("Read " + scopesProd.size() + " VREs from root scope: " + rootScope);
for (String vre : scopesProd) {
System.out.println("VRE: " + vre);
}
int count = 0;
try {
final String ckanResource = "org.gcube.data.access.ckanconnector.CkanConnector";
final String serviceName = "CkanConnector";
final String serviceClass = "DataAccess";
int totalScope = scopesProd.size();
int reportOp = 0;
int errorOp = 0;
for (String scope : scopesProd) {
count++;
System.out.println("#### Operation "+ count+ " of "+totalScope+") Fetching scope: " + scope);
ScopeProvider.instance.set(scope);
GcoreEndpointReader reader = null;
try {
// discovery = new GCatClientDiscovery();
reader = new GcoreEndpointReader(scope, serviceClass, serviceName, ckanResource);
} catch (Exception e) {
System.out.println("gCat not instanciable in the scope: " + scope);
errorOp++;
writeError(errorOp + "; " + scope + " ; " + e.getMessage());
}
if (reader != null) {
reportOp++;
writeReport(reportOp + "; " + scope + " ; " + reader.getEndPoints().get(0) + " ; ");
}
System.out.println("Sleeping...");
Thread.sleep(500);
}
} catch (Exception e) {
e.printStackTrace();
} finally {
if (reportPrintWriter != null)
reportPrintWriter.close();
if (errorPrintWriter != null)
errorPrintWriter.close();
System.out.println("Performed fetching from " + count + " scopes");
System.out.println("FINISHED!!!");
}
}
/**
* Write report.
*
* @param newline the newline
*/
private static synchronized void writeReport(String newline) {
c++;
reportPrintWriter.println(newline);
}
/**
* Write error.
*
* @param newline the newline
*/
private static synchronized void writeError(String newline) {
c++;
errorPrintWriter.println(newline);
}
}

View File

@ -0,0 +1,381 @@
package gis;
import java.util.HashMap;
import java.util.Iterator;
import java.util.Map;
import org.gcube.common.encryption.StringEncrypter;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.GeoNetwork;
import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
import org.gcube.spatial.data.geonetwork.GeoNetworkReader;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.gcube.spatial.data.geonetwork.configuration.Configuration;
import org.gcube.spatial.data.geonetwork.model.Account;
import org.gcube.spatial.data.geonetwork.model.Account.Type;
import org.junit.Test;
import it.geosolutions.geonetwork.util.GNSearchRequest;
import it.geosolutions.geonetwork.util.GNSearchResponse;
import it.geosolutions.geonetwork.util.GNSearchResponse.GNMetadata;
/**
* The Class GeonetworkQueryTest.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
* Aug 31, 2016
*/
public class GeonetworkQueryTest {
private static final int MAX = 30;
//private String[] scopes = {"/gcube/devsec/devVRE"};
//private String[] scopes = {"/gcube/devsec/StaTabTest"};
//private String[] scopes = {"/gcube/devsec/devVRE"};
//private String[] scopes = {"/pred4s/preprod/preVRE"};
//private String[] scopes = {"/d4science.research-infrastructures.eu"};
//private String[] scopesProd = {"/d4science.research-infrastructures.eu/gCubeApps/fisheriesandecosystematmii"};
//private String[] scopesProd = {"/d4science.research-infrastructures.eu/D4Research"};
//private String[] scopesProd = {"/d4science.research-infrastructures.eu"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/BlueBridgeProject"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/AquacultureAtlasGeneration"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/FrenchTropicalTunaAtlas"};
private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/BiodiversityLab"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/SIASPA"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/ICCAT_BFT-E"};
private LoginLevel loginLevel = LoginLevel.CKAN;
private Type accountType = Type.CKAN;
private String textToSearch = "geo_fea";
/**
* Gets the count.
*
* @return the count
* @throws Exception the exception
*/
//@Test
public void getCount() throws Exception{
try{
for(String scope:scopes){
ScopeProvider.instance.set(scope);
GeoNetworkPublisher reader=GeoNetwork.get();
Configuration config = reader.getConfiguration();
Account account=config.getScopeConfiguration().getAccounts().get(accountType);
// Configuration config = gnInstance.getGeonetworkPublisher().getConfiguration();
// Account account = config.getScopeConfiguration().getAccounts().get(Type.CKAN);
//System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
System.out.println("USER: "+account.getUser()+", Pwd: "+account.getPassword());
System.out.println("GN: "+config.getGeoNetworkEndpoint());
try{
String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
System.out.println("Decrypted Password: "+decryptedPassword);
}catch(Exception e){
System.out.println("ignoring exception during pwd decrypting");
}
// req.addParam("keyword", "Thredds");
final GNSearchRequest req=new GNSearchRequest();
// req.addParam(GNSearchRequest.Param.any,"Thredds");
GNSearchResponse resp = reader.query(req);
int publicCount=resp.getCount();
System.out.println("Public UUIDs are: "+publicCount);
Map<Long,String> publicUUIDs = getUUIDs(resp);
System.out.println("Filled list of Public UUIDs with: "+publicUUIDs.size());
System.out.println("Public layers are: ");
printLayers(publicUUIDs);
reader.login(loginLevel);
resp = reader.query(req);
int totalCount=resp.getCount();
System.out.println("All UUIDs are: "+totalCount);
Map<Long,String> allUUIDs = getUUIDs(resp);
System.out.println("Filled list of All UUIDs with: "+allUUIDs.size());
System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
System.out.println("Private layers are: ");
allUUIDs.keySet().removeAll(publicUUIDs.keySet());
printLayers(allUUIDs);
/*if(totalCount==0)
return;
try{
int last = totalCount<MAX?totalCount:MAX;
for(int i=0; i<last; i++){
String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
System.out.println(i+") UUID: "+resp.getMetadata(i).getUUID() + " ID: "+resp.getMetadata(i).getId());
//System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
}
}catch(Exception e ){
e.printStackTrace();
}*/
System.out.println("DONE!!!");
}
}catch(Exception e){
e.printStackTrace();
}
}
/**
* Prints the layers.
*
* @param layersUUIDs the layers UUI ds
*/
public void printLayers(Map<Long,String> layersUUIDs) {
int index = 0;
for (Long key : layersUUIDs.keySet()) {
index++;
System.out.println(index+") ID: "+key+" - UUID: "+layersUUIDs.get(key));
}
}
/**
* Gets the UUI ds.
*
* @param resp the resp
* @return the UUI ds
*/
public static Map<Long,String> getUUIDs(GNSearchResponse resp){
Map<Long,String> listUUIDs = new HashMap<Long,String>();
Iterator<GNMetadata> iterator = resp.iterator();
while(iterator.hasNext()) {
GNMetadata meta = iterator.next();
//listUUIDs.add(new GN_META_REF(meta.getId(), meta.getUUID()));
listUUIDs.put(meta.getId(), meta.getUUID());
//System.out.println("Added: "+meta.getUUID());
}
return listUUIDs;
}
/**
* Gets the layers by search.
*
* @return the layers by search
* @throws Exception the exception
*/
//@Test
public void getLayersBySearch() throws Exception{
try{
for(String scope:scopes){
ScopeProvider.instance.set(scope);
GeoNetworkPublisher reader=GeoNetwork.get();
Configuration config = reader.getConfiguration();
Account account=config.getScopeConfiguration().getAccounts().get(accountType);
//System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
try{
String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
System.out.println("Decrypted Password: "+decryptedPassword);
}catch(Exception e){
System.out.println("ignoring exception during pwd decrypting");
}
// req.addParam("keyword", "Thredds");
//final GNSearchRequest req=new GNSearchRequest();
final GNSearchRequest req = getRequest(true, textToSearch);
// req.addParam(GNSearchRequest.Param.any,"Thredds");
GNSearchResponse resp = reader.query(req);
int publicCount=resp.getCount();
reader.login(loginLevel);
int totalCount=reader.query(req).getCount();
System.out.println("QUERY "+textToSearch);
System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
// if(totalCount==0)
// return;
// try{
// int last = totalCount>MAX?totalCount:MAX;
//
// for(int i=0; i<last; i++){
// //String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
// GNMetadata xml = resp.getMetadata(i);
// //System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
// System.out.println(xml.toString());
// }
// }catch(Exception e ){
// e.printStackTrace();
// }
}
}catch(Exception e){
e.printStackTrace();
}
}
/**
* Contains string.
*
* @param txt the txt
* @param value the value
* @return true, if successful
*/
private boolean containsString(String txt, String value){
return txt.contains(value);
}
/**
* Gets the request.
*
* @param sortByTitle the sort by title
* @param textToSearch the text to search
* @return the request
*/
public GNSearchRequest getRequest(boolean sortByTitle, String textToSearch) {
GNSearchRequest req = new GNSearchRequest();
if(sortByTitle)
req.addConfig(GNSearchRequest.Config.sortBy, "title");
if(textToSearch==null || textToSearch.isEmpty()){
req.addParam(GNSearchRequest.Param.any, textToSearch);
System.out.println("search by any text");
}else{
req.addParam(GNSearchRequest.Param.title, textToSearch);
req.addConfig(GNSearchRequest.Config.similarity, "1");
System.out.println("search by title");
}
System.out.println("text to search "+textToSearch);
return req;
}
/**
* The Class GN_META_REF.
*
* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
*
* May 20, 2019
*/
public static class GN_META_REF{
Long id;
String uuid;
/**
* Gets the id.
*
* @return the id
*/
public Long getId() {
return id;
}
/**
* Sets the id.
*
* @param id the new id
*/
public void setId(Long id) {
this.id = id;
}
/**
* Gets the uuid.
*
* @return the uuid
*/
public String getUuid() {
return uuid;
}
/**
* Sets the uuid.
*
* @param uuid the new uuid
*/
public void setUuid(String uuid) {
this.uuid = uuid;
}
/**
* Instantiates a new gn meta ref.
*
* @param id the id
* @param uuid the uuid
*/
public GN_META_REF(Long id, String uuid) {
super();
this.id = id;
this.uuid = uuid;
}
/* (non-Javadoc)
* @see java.lang.Object#toString()
*/
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("GN_META_REF [id=");
builder.append(id);
builder.append(", uuid=");
builder.append(uuid);
builder.append("]");
return builder.toString();
}
}
/**
* Gets the count prod.
*
* @return the count prod
* @throws Exception the exception
*/
// @Test
public void getCountProd() throws Exception{
try{
for(String scope:scopes){
ScopeProvider.instance.set(scope);
GeoNetworkReader reader=GeoNetwork.get();
final GNSearchRequest req=new GNSearchRequest();
// req.addParam("keyword", "Thredds");
// req.addParam(GNSearchRequest.Param.any,"Oscar");
int publicCount=reader.query(req).getCount();
reader.login(loginLevel);
int totalCount=reader.query(req).getCount();
System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
}
}catch (Exception e) {
e.printStackTrace();
}
}
}

View File

@ -0,0 +1,267 @@
//package gis;
//import it.geosolutions.geonetwork.util.GNSearchRequest;
//import it.geosolutions.geonetwork.util.GNSearchResponse;
//
//import java.io.BufferedInputStream;
//import java.io.BufferedReader;
//import java.io.FileNotFoundException;
//import java.io.FileReader;
//import java.io.IOException;
//import java.io.InputStream;
//import java.util.ArrayList;
//import java.util.List;
//import java.util.stream.Collectors;
//
//import javax.xml.parsers.DocumentBuilder;
//import javax.xml.parsers.DocumentBuilderFactory;
//
//import org.gcube.common.encryption.StringEncrypter;
//import org.gcube.common.scope.api.ScopeProvider;
//import org.gcube.spatial.data.geonetwork.GeoNetwork;
//import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
//import org.gcube.spatial.data.geonetwork.LoginLevel;
//import org.gcube.spatial.data.geonetwork.configuration.Configuration;
//import org.gcube.spatial.data.geonetwork.model.Account;
//import org.gcube.spatial.data.geonetwork.model.Account.Type;
//import org.slf4j.Logger;
//import org.slf4j.LoggerFactory;
//import org.w3c.dom.Document;
//import org.w3c.dom.Element;
//import org.w3c.dom.NodeList;
//
///**
// *
// * @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
// * Aug 31, 2016
// */
//public class ICCATQueryTest {
//
// private static final int MAX = 200;
//
// //private String[] scopes = {"/gcube/devNext/NextNext"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu"};
//
// private static String[] scopesProd = {"/d4science.research-infrastructures.eu/gCubeApps/ICCAT_BFT-E"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu/gCubeApps/fisheriesandecosystematmii"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu/D4Research"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu"};
//
// private static LoginLevel loginLevel = LoginLevel.CKAN;
//
// private static Type accountType = Type.SCOPE;
//
// private static String textToSearch = "geo_fea";
//
// private static Logger logger = LoggerFactory.getLogger(ICCATQueryTest.class);
//
// private static enum LAYER_TYPE {PRIVATE, PUBLIC, ALL}
//
//
// public static List<String> getLayers(LAYER_TYPE type) throws Exception{
//
// try{
// for(String scope:scopesProd){
// ScopeProvider.instance.set(scope);
// GeoNetworkPublisher reader=GeoNetwork.get();
//
// Configuration config = reader.getConfiguration();
// Account account=config.getScopeConfiguration().getAccounts().get(accountType);
//
// //System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
// System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
//
// try{
// String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
// System.out.println("Decrypted Password: "+decryptedPassword);
// }catch(Exception e){
// System.out.println("ignoring exception during pwd decrypting");
// }
//
//
// // req.addParam("keyword", "Thredds");
// final GNSearchRequest req=new GNSearchRequest();
//// req.addParam(GNSearchRequest.Param.any,"Thredds");
// GNSearchResponse resp = reader.query(req);
// int publicCount=resp.getCount();
//
// List<String> publicLayers = new ArrayList<String>();
// for(int i=0; i<publicCount; i++)
// publicLayers.add(resp.getMetadata(i).getUUID());
//
// System.out.println("Public layers are: "+publicLayers.size());
//
// //PERFOMING LOGIN TO GET ALL LAYERS
// reader.login(loginLevel);
// resp = reader.query(req);
// int totalCount=resp.getCount();
// int privateCount = totalCount-publicCount;
//
// System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+privateCount+")");
//
// List<String> privateLayers = new ArrayList<String>();
// for(int i=0; i<totalCount; i++){
//
// String uuid = resp.getMetadata(i).getUUID();
// //System.out.println("Searching UUID: "+uuid);
// if(!publicLayers.contains(uuid)){
// privateLayers.add(uuid);
// }
//
//// String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
//// InputStream stream = new ByteArrayInputStream(xml.getBytes(StandardCharsets.UTF_8));
//// iccatGNUUID.add(toGetFileIdentifier(stream));
//
// //System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
// }
//
// System.out.println("Private layers are: "+privateLayers.size());
//
//
// switch (type) {
// case PUBLIC:
// return publicLayers;
// case PRIVATE:
// return privateLayers;
// case ALL:
// publicLayers.addAll(privateLayers);
// return publicLayers;
// default:
// break;
// }
// }
// }catch(Exception e){
// e.printStackTrace();
// }
// return null;
// }
//
// /**
// * Override summary record.
// *
// * @param doc the doc
// * @param identifier the identifier
// * @return true, if successful
// */
// private static String getFileIdentifierValue(Document doc) {
//
// // <csw:SummaryRecord> list
// NodeList nodes = doc.getElementsByTagName("gmd:MD_Metadata");
// logger.debug("gmd:MD_Metadata are: " + nodes.getLength());
// for (int i = 0; i < nodes.getLength(); i++) {
// Element mdMetadata = (Element) nodes.item(i);
//
// // <dc:identifier>
// NodeList fileIdentifierLst = mdMetadata.getElementsByTagName("gmd:fileIdentifier");
// if(fileIdentifierLst==null || fileIdentifierLst.getLength()==0 || fileIdentifierLst.item(0)==null){
// logger.info("skipping, it has not fileidentifier");
// return null;
// }
//
// Element id = (Element) fileIdentifierLst.item(0);
//
// NodeList gcoLst = id.getElementsByTagName("gco:CharacterString");
// if(gcoLst==null || gcoLst.getLength()==0 || gcoLst.item(0)==null){
// logger.info("skipping, it has not gco:CharacterString");
// return null;
// }
//
// Element gco = (Element) gcoLst.item(0);
// String idValue = gco.getTextContent();
// logger.trace("Summary gmd:fileIdentifier is: " + idValue);
// return idValue;
// }
//
// return null;
// }
//
// /**
// * Removes the summary ids by list ids.
// *
// * @param getRecordsResponse the get records response
// * @param idsToRemove the ids to remove
// * @return the input stream
// * @throws IOException Signals that an I/O exception has occurred.
// */
// public static String toGetFileIdentifier(InputStream getRecordResponse) throws IOException {
//
// try {
// // logger.trace("getRecordsResponse is: "+IOUtils.toString(getRecordsResponse));
// BufferedInputStream bis = new BufferedInputStream(getRecordResponse);
// DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
// dbf.setValidating(false);
// DocumentBuilder db = dbf.newDocumentBuilder();
// Document doc = db.parse(bis);
// return getFileIdentifierValue(doc);
// }
// catch (Exception e) {
// logger.error("An error occurred during removing IDS by List: ", e);
// return null;
// }
// }
//
//
// public static List<String> fileReader() throws FileNotFoundException{
//
// String fileName = "iccat_name_catalogue.csv";
//
//// //read file into stream, try-with-resources
//// try (Stream<String> stream = Files.lines(Paths.get(fileName))) {
////
//// stream.forEach(System.out::println);
////
//// } catch (IOException e) {
//// e.printStackTrace();
//// }
//
// FileReader reportReader = new FileReader(fileName);
// //Stream<String> stream = reportBW.lines();
// List<String> list = new ArrayList<>();
// try (BufferedReader reportBW = new BufferedReader(reportReader)){
//
// list = reportBW.lines().collect(Collectors.toList());
//
// }catch (Exception e) {
// e.printStackTrace();
// }
//
// return list;
// }
//
//
// public static void main(String[] args) {
//
// List<String> listCKAN;
// try {
// listCKAN = fileReader();
// System.out.println("CKAN Layers are: "+listCKAN.size());
//// for (String line : listCKAN) {
//// System.out.println("CKAN UUID: "+line);
//// }
//
// List<String> listLayersUUID = getLayers(LAYER_TYPE.PUBLIC);
// System.out.println("List Layers UUID are: "+listLayersUUID.size());
//// for (String line : listLayersUUID) {
//// System.out.println("PRIVATE GN UUID: "+line);
//// }
//
//
// listCKAN.removeAll(listLayersUUID);
//
// System.out.println("\n\n\nCKAN contains other: "+listCKAN.size());
// for (String line : listCKAN) {
// System.out.println("CKAN UUID: "+line);
// }
//
// }catch (Exception e) {
// // TODO Auto-generated catch block
// e.printStackTrace();
// }
//
//
//
// }
//}

View File

@ -0,0 +1,169 @@
/**
*
*/
package gis;
import it.geosolutions.geonetwork.util.GNSearchRequest;
import it.geosolutions.geonetwork.util.GNSearchResponse;
import resources.GetAllInfrastructureScopes;
import java.io.BufferedWriter;
import java.io.FileWriter;
import java.io.PrintWriter;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.GeoNetwork;
import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.junit.Test;
/**
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
* Mar 10, 2017
*/
public class LayersMatchingGN_CKAN {
//GN CONFIGURATIONS
public static String rootScope = "/d4science.research-infrastructures.eu";
//static String rootScope = "/pred4s";
// static String rootScope = "/gcube";
public static String platformName = "geonetwork";
public static LoginLevel loginLevel = LoginLevel.ADMIN;
//static Type accountType = Type.SCOPE;
public static String textToSearch = "geo_fea";
public static PrintWriter reportPrintWriter;
public static PrintWriter errorPrintWriter;
public static void main(String[] args) {
try{
FileWriter reportWriter = new FileWriter(rootScope.substring(1,rootScope.length())+"_report_matching_gn_catalogue.csv", true);
FileWriter errorWriter = new FileWriter(rootScope.substring(1,rootScope.length())+"_error_matching_gn_catalogue.csv", true);
BufferedWriter reportBW = new BufferedWriter(reportWriter);
BufferedWriter errorBW = new BufferedWriter(errorWriter);
reportPrintWriter = new PrintWriter(reportBW);
reportPrintWriter.println("NB.; SCOPE; GN Endpoint; TOTAL LAYERS; PUBLIC LAYERS; PRIVATE LAYERS");
errorPrintWriter = new PrintWriter(errorBW);
errorPrintWriter.println("SCOPE;");
}catch(Exception e){
e.printStackTrace();
}
// final Path destination = Paths.get("report_matching_gn_catalogue.csv");
// Files.w(re, destination);
List<String> scopesProd = new ArrayList<String>();
//RuntimeResourceReader readerRR;
try {
//MODE-1
// readerRR = new RuntimeResourceReader(rootScope, platformName, null);
// System.out.println(readerRR.toString());
// System.out.println("Using GN: "+readerRR.getParameters());
// System.out.println("Scopes are: "+readerRR.getScopes().size());
// scopesProd.addAll(readerRR.getScopes());
//MODE-2
Map<String,String> mapScopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
scopesProd.addAll(mapScopes.values());
}
catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
System.out.println("Read "+scopesProd.size() +" VREs from root scope: "+rootScope);
int i = 0;
for (String vre : scopesProd) {
System.out.println(++i +"; "+vre);
}
System.out.println("Scope found: "+scopesProd.size());
int count = 0;
try{
for(String scope:scopesProd){
count++;
System.out.println("\n\n#"+count+" of "+scopesProd.size()+ " - Fetching scope: "+scope);
ScopeProvider.instance.set(scope);
GeoNetworkPublisher reader = null;
String gnEP = null;
try{
reader=GeoNetwork.get();
gnEP = reader.getConfiguration().getGeoNetworkEndpoint();
}catch (Exception e) {
System.out.println("GeoNetwork not instanciable in the scope: "+scope);
writeError(count+"; "+scope+" ; "+e.getMessage());
}
if(reader!=null){
// Configuration config = reader.getConfiguration();
// Account account=config.getScopeConfiguration().getAccounts().get(accountType);
//
// //System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
// System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
//
// try{
// String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
// System.out.println("Decrypted Password: "+decryptedPassword);
// }catch(Exception e){
// System.out.println("ignoring exception during pwd decrypting");
// }
// req.addParam("keyword", "Thredds");
final GNSearchRequest req=new GNSearchRequest();
// req.addParam(GNSearchRequest.Param.any,"Thredds");
GNSearchResponse resp = reader.query(req);
int publicCount=resp.getCount();
reader.login(loginLevel);
int totalCount=reader.query(req).getCount();
//System.out.println("SCOPE "+scope+" ; found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
writeReport(count+"; "+scope+" ; "+gnEP+"; "+totalCount+" ; "+publicCount+"; "+(totalCount-publicCount));
if(totalCount==0)
return;
// try{
// int last = totalCount>MAX?totalCount:MAX;
// for(int i=0; i<last; i++){
// String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
// System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
// }
// }catch(Exception e ){
// e.printStackTrace();
// }
}
}
}catch(Exception e){
e.printStackTrace();
}finally{
if(reportPrintWriter!=null)
reportPrintWriter.close();
if(errorPrintWriter!=null)
errorPrintWriter.close();
System.out.println("Performed fetching from "+count+" scopes");
System.out.println("FINISHED!!!");
}
}
private static void writeReport(String newline){
reportPrintWriter.println(newline);
}
private static void writeError(String newline){
errorPrintWriter.println(newline);
}
}

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@ -0,0 +1,169 @@
package gis;
import static org.gcube.resources.discovery.icclient.ICFactory.clientFor;
import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
import java.util.ArrayList;
import java.util.List;
import org.gcube.common.encryption.StringEncrypter;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.resources.gcore.ServiceEndpoint;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
import org.gcube.resources.discovery.client.api.DiscoveryClient;
import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* The Class RuntimeResourceReader.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it Mar 10, 2017
*/
public class RuntimeResourceReader {
// public static final String GEONETWORK_END_POINT =
// "http://geonetwork.d4science.org/geonetwork";
public static final Logger logger = LoggerFactory.getLogger(RuntimeResourceReader.class);
// private List<String> scopes = new ArrayList<String>();
private List<ServiceEndpointBean> listSE = new ArrayList<ServiceEndpointBean>();
/**
* Instantiates a new runtime resource reader.
*
* @param scope the scope
* @param platformName the platform name
* @param endPoint the end point
* @throws Exception the exception
*/
public RuntimeResourceReader(String scope, String platformName, String category, String endPoint) throws Exception {
read(scope, platformName, category, endPoint);
}
/**
* Read.
*
* @param scope the scope
* @param platformName the platform name
* @param endPoint the end point
* @return the server parameters
* @throws Exception the exception
*/
private List<ServiceEndpointBean> read(String scope, String platformName, String category, String endPoint)
throws Exception {
String originalScope = null;
try {
originalScope = ScopeProvider.instance.get();
ScopeProvider.instance.set(scope);
SimpleQuery query = queryFor(ServiceEndpoint.class);
query.addCondition("$resource/Profile/Platform/Name/text() eq '" + platformName + "'");
query.addCondition("$resource/Profile/Category/text() eq '" + category + "'");
if (endPoint != null && !endPoint.isEmpty())
query.addCondition("$resource/Profile/AccessPoint/Interface/Endpoint/text() eq '" + endPoint + "'");
// query.addVariable("$prop", "$resource/Profile/AccessPoint/Properties/Property")
// .addCondition("$prop/Name/text() eq 'priority'")
// .addCondition("$prop/Value/text() eq '1'");
logger.info("GeoRuntimeReader, using scope: " + scope + ", to get resource: " + platformName);
DiscoveryClient<ServiceEndpoint> client = clientFor(ServiceEndpoint.class);
List<ServiceEndpoint> listServiceEndpoint = client.submit(query);
if (listServiceEndpoint == null || listServiceEndpoint.isEmpty())
throw new Exception("Cannot retrieve the runtime resource: " + platformName);
for (ServiceEndpoint serviceEndpoint : listServiceEndpoint) {
ServiceEndpointBean seb = new ServiceEndpointBean();
seb.setRuntime(serviceEndpoint.profile().runtime());
List<AccessPoint> listAp = new ArrayList<ServiceEndpoint.AccessPoint>();
try {
for (AccessPoint accessPoint : serviceEndpoint.profile().accessPoints()) {
listAp.add(accessPoint);
}
} catch (Exception e) {
System.err.println("Error on reading Access point not found");
}
System.out.println("sono qui");
seb.setListAP(listAp);
listSE.add(seb);
}
} catch (Exception e) {
logger.error("Sorry, an error occurred on reading parameters in Runtime Resources", e);
} finally {
if (originalScope != null && !originalScope.isEmpty()) {
ScopeProvider.instance.set(originalScope);
logger.info("scope provider setted to orginal scope: " + originalScope);
} else {
ScopeProvider.instance.reset();
logger.info("scope provider reset");
}
}
return listSE;
}
public List<ServiceEndpointBean> getListSE() {
return listSE;
}
/**
* The main method.
*
* @param args the arguments
*/
public static void main(String[] args) {
String scope = "/gcube/devsec/devVRE";
//String platformName = "GeoServer";
String platformName = "postgis";
String category = "Database";
//scope = "/pred4s/preprod/preVRE";
RuntimeResourceReader reader;
try {
ScopeProvider.instance.set(scope);
reader = new RuntimeResourceReader(scope, platformName, category, null);
for (ServiceEndpointBean seb : reader.getListSE()) {
System.out.println("Found: " + seb);
List<AccessPoint> listAp = seb.getListAP();
for (AccessPoint ap : listAp) {
System.out.println("username: " + ap.username());
System.out.println("password: " + ap.password());
try{
String decryptedPassword = StringEncrypter.getEncrypter().decrypt(ap.password());
System.out.println("Decrypted Password: "+decryptedPassword);
}catch(Exception e){
System.out.println("ignoring exception during pwd decrypting");
}
}
}
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
}

View File

@ -0,0 +1,167 @@
/**
*
*/
package gis;
import it.geosolutions.geonetwork.util.GNSearchRequest;
import it.geosolutions.geonetwork.util.GNSearchResponse;
import resources.GetAllInfrastructureScopes;
import java.io.BufferedWriter;
import java.io.FileWriter;
import java.io.PrintWriter;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.GeoNetwork;
import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.junit.Test;
import com.itextpdf.text.log.SysoCounter;
/**
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it Mar 10, 2017
*/
public class SE_Harvester_from_IS {
// GN CONFIGURATIONS
public static String rootScope = "/d4science.research-infrastructures.eu";
// static String rootScope = "/pred4s";
// static String rootScope = "/gcube";
public static final String platformName = "geoserver";
public static final String category = "Gis";
public static LoginLevel loginLevel = LoginLevel.ADMIN;
public static PrintWriter reportPrintWriter;
public static PrintWriter errorPrintWriter;
public static HashSet<String> uniqueGNs = new HashSet<String>();
public static void main(String[] args) {
try {
FileWriter reportWriter = new FileWriter(
rootScope.substring(1, rootScope.length()) + "_report_" + platformName + "_harvester.csv", true);
FileWriter errorWriter = new FileWriter(
rootScope.substring(1, rootScope.length()) + "_error_" + platformName + "_harvester.csv", true);
BufferedWriter reportBW = new BufferedWriter(reportWriter);
BufferedWriter errorBW = new BufferedWriter(errorWriter);
reportPrintWriter = new PrintWriter(reportBW);
reportPrintWriter.println("NB.; SCOPE; SE Hosted_On; SE AccessPoint;");
errorPrintWriter = new PrintWriter(errorBW);
errorPrintWriter.println("SCOPE;");
} catch (Exception e) {
e.printStackTrace();
}
// final Path destination = Paths.get("report_matching_gn_catalogue.csv");
// Files.w(re, destination);
List<String> listScopes = new ArrayList<String>();
// RuntimeResourceReader readerRR;
try {
// MODE-1
// readerRR = new RuntimeResourceReader(rootScope, platformName, null);
// System.out.println(readerRR.toString());
// System.out.println("Using GN: "+readerRR.getParameters());
// System.out.println("Scopes are: "+readerRR.getScopes().size());
// scopesProd.addAll(readerRR.getScopes());
// MODE-2
Map<String, String> mapScopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
listScopes.addAll(mapScopes.values());
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
System.out.println("Read " + listScopes.size() + " VREs from root scope: " + rootScope);
int i = 0;
for (String vre : listScopes) {
System.out.println(++i + "; " + vre);
}
System.out.println("Scope found: " + listScopes.size());
try {
searchFor(listScopes, platformName, category);
searchFor(listScopes, "GeoServer", category);
System.out.println("\n\nUnique " + platformName + " addresses");
uniqueGNs.stream().forEach(s -> System.out.println(s));
} catch (Exception e) {
e.printStackTrace();
} finally {
if (reportPrintWriter != null)
reportPrintWriter.close();
if (errorPrintWriter != null)
errorPrintWriter.close();
System.out.println("Performed fetching from " + listScopes.size() + " scopes");
System.out.println("FINISHED!!!");
}
}
private static void searchFor(List<String> listScopes, String platformName, String category) {
int count = 0;
int writerCount = 0;
try {
for (String scope : listScopes) {
count++;
System.out.println("\n\n#" + count + " of " + listScopes.size() + " - Fetching scope: " + scope);
RuntimeResourceReader rrr = new RuntimeResourceReader(scope, platformName, category, null);
List<ServiceEndpointBean> listSE = rrr.getListSE();
for (ServiceEndpointBean seb : listSE) {
StringBuilder sb = new StringBuilder();
for (AccessPoint ap : seb.getListAP()) {
sb.append(ap.address());
sb.append(", ");
uniqueGNs.add(ap.address());
}
sb.toString();
writerCount++;
writeReport(
writerCount + "; " + scope + " ; " + seb.getRuntime().hostedOn() + "; " + sb.toString());
}
Thread.sleep(200);
// if(count==10)
// break;
}
} catch (Exception e) {
e.printStackTrace();
}
}
private static void writeReport(String newline) {
reportPrintWriter.println(newline);
}
private static void writeError(String newline) {
errorPrintWriter.println(newline);
}
}

View File

@ -0,0 +1,60 @@
package gis;
import java.io.Serializable;
import java.util.List;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
/**
* The Class ServerParameters.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it May 16, 2017
*/
public class ServiceEndpointBean implements Serializable {
/**
*
*/
private static final long serialVersionUID = 2459971193655529274L;
protected org.gcube.common.resources.gcore.ServiceEndpoint.Runtime runtime;
protected List<AccessPoint> listAP;
public ServiceEndpointBean() {
// TODO Auto-generated constructor stub
}
public ServiceEndpointBean(org.gcube.common.resources.gcore.ServiceEndpoint.Runtime runtime, List<AccessPoint> listAP) {
super();
this.runtime = runtime;
this.listAP = listAP;
}
public org.gcube.common.resources.gcore.ServiceEndpoint.Runtime getRuntime() {
return runtime;
}
public List<AccessPoint> getListAP() {
return listAP;
}
public void setRuntime(org.gcube.common.resources.gcore.ServiceEndpoint.Runtime runtime2) {
this.runtime = runtime2;
}
public void setListAP(List<AccessPoint> listAP) {
this.listAP = listAP;
}
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("ServiceEndpoint [runtime=");
builder.append(runtime);
builder.append(", listAP=");
builder.append(listAP);
builder.append("]");
return builder.toString();
}
}

View File

@ -49,7 +49,7 @@ public class GeonetworkResolverTest {
/*String scopeValue ="/gcube/devsec/devVRE";
String remainValue = "/srv/en/mef.export";
String queryString = "scope=/gcube/devsec/devVRE&remainPath=/srv/en/mef.export&version=2.0.2&request=GetCapabilities&service=CSW";
ServerParameters geonetworkParams = new ServerParameters("http://geoserver-dev2.d4science-ii.research-infrastructures.eu/geonetwork", "", "");
ServiceEndpointParameters geonetworkParams = new ServiceEndpointParameters("http://geoserver-dev2.d4science-ii.research-infrastructures.eu/geonetwork", "", "");
String newQueryString = purgeScopeFromQueryString(scopeValue, queryString);
logger.info("Purged query string from "+scopeValue+" is: "+newQueryString);

View File

@ -18,7 +18,7 @@ public class GisResolverTest {
public static void main(String[] args) {
GisResolver gisResolver = new GisResolver();
ScopeProvider.instance.set(scope);
//ServerParameters geonetworkParams = getCachedServerParameters(scope);
//ServiceEndpointParameters geonetworkParams = getCachedServerParameters(scope);
try {
GisLayerItem gisLayerItem = gisResolver.getGisLayerForLayerUUID(null, scope, gisUUID);
} catch (Exception e) {
@ -33,7 +33,7 @@ public class GisResolverTest {
String scope = "/gcube/devsec/devVRE";
String UUID = "177e1c3c-4a22-4ad9-b015-bfc443d16cb8";
try {
ServerParameters geonetworkParams = gisResolver.getCachedServerParameters(scope);
ServiceEndpointParameters geonetworkParams = gisResolver.getCachedServerParameters(scope);
String wmsRequest = gisResolver.getLayerWmsRequest(scope, UUID, geonetworkParams);
System.out.println("Final url is: " + wmsRequest);
wmsRequest = URLEncoder.encode(wmsRequest, UTF_8);

View File

@ -84,7 +84,7 @@ public class ServiceEndpointReader {
if (accessPointPwd != null) {
accessPointPwd = StringEncrypter.getEncrypter().decrypt(accessPointPwd);
LOG.info("Decrypted pwd registered into Access Point '" + accessPoint.name() + "' is: "
+ accessPointPwd.substring(0,accessPointPwd.length()/2)+"...");
+ accessPointPwd+"...");
System.out.println("AccessPoint pwd is: "+accessPointPwd);
}

View File

@ -1,23 +1,10 @@
package org.gcube.datatransfer.test;
import javax.ws.rs.core.Response;
import javax.ws.rs.core.Response.ResponseBuilder;
import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.storagehub.client.StreamDescriptor;
import org.gcube.common.storagehub.client.plugins.AbstractPlugin;
import org.gcube.common.storagehub.client.proxies.ItemManagerClient;
import org.gcube.datatransfer.resolver.catalogue.resource.CkanCatalogueConfigurationsReader;
import org.gcube.datatransfer.resolver.catalogue.resource.GatewayCKANCatalogueReference;
import org.gcube.datatransfer.resolver.init.UriResolverSmartGearManagerInit;
import org.gcube.datatransfer.resolver.services.CatalogueResolver;
import org.gcube.datatransfer.resolver.services.StorageHubResolver;
import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
import org.gcube.datatransfer.resolver.shub.StorageHubMetadataResponseBuilder;
import org.junit.Before;
import org.junit.Test;
import com.itextpdf.text.log.SysoCounter;
/**
@ -34,7 +21,7 @@ public class StorageHubTest {
private static String vreName = "BlueBridgeProject";
private String rootContextScope = "/d4science.research-infrastructures.eu";
private String authorizationToken = "ea16e0fa-722a-4589-83b0-0a731d2d4039-843339462";
private String authorizationToken = "";
//@Before
public void init() {

View File

@ -0,0 +1,161 @@
package resources;
import static org.gcube.resources.discovery.icclient.ICFactory.client;
import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
import java.io.BufferedWriter;
import java.io.FileWriter;
import java.io.PrintWriter;
import java.io.Serializable;
import java.util.List;
import java.util.Map;
import org.gcube.common.resources.gcore.GCoreEndpoint;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.resources.discovery.client.api.DiscoveryClient;
import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* The Class GcoreEndpointReader.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
* Jun 10, 2016
*/
public class GcoreEndpointReader implements Serializable{
private static final long serialVersionUID = 7631710353375893823L;
private static final Logger logger = LoggerFactory.getLogger(GcoreEndpointReader.class);
private List<String> endPoints;
/**
* Instantiates a new gcore endpoint reader.
*
* @param scope the scope
* @throws Exception the exception
*/
public GcoreEndpointReader(String scope, String serviceClass, String serviceName, String ckanResource) throws Exception {
String currentScope = ScopeProvider.instance.get();
try{
logger.info("set scope "+scope);
ScopeProvider.instance.set(scope);
SimpleQuery query = queryFor(GCoreEndpoint.class);
query.addCondition(String.format("$resource/Profile/ServiceClass/text() eq '%s'",serviceClass));
query.addCondition("$resource/Profile/DeploymentData/Status/text() eq 'ready'");
query.addCondition(String.format("$resource/Profile/ServiceName/text() eq '%s'",serviceName));
query.addCondition(String.format("$resource/Scopes/Scope/text()[.='%s']", scope)); // i.e. check the resource contains among the scopes this one
query.setResult("$resource/Profile/AccessPoint/RunningInstanceInterfaces//Endpoint[@EntryName/string() eq \""+ckanResource+"\"]/text()");
logger.debug("submitting quey "+query.toString());
DiscoveryClient<String> client = client();
List<String> endpoints = client.submit(query);
if (endpoints == null || endpoints.isEmpty()) throw new Exception("Cannot retrieve the GCoreEndpoint serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope);
for (String endpoint : endpoints) {
System.out.println("end point "+endpoint);
}
this.endPoints = endpoints;
if(endPoints==null)
throw new Exception("Endpoint:"+ckanResource+", is null for serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope);
logger.info("found entyname "+endPoints+" for ckanResource: "+ckanResource);
/*Group<Endpoint> accessPoints = se.profile().endpoints();
if(accessPoints.size()==0) throw new Exception("Endpoint in serviceName serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope +" not found");
Endpoint ep = accessPoints.iterator().next();
String epName = ep.name();
System.out.println(epName);*/
}catch(Exception e){
String error = "An error occurred during GCoreEndpoint discovery, serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope +".";
logger.error(error, e);
throw new Exception(error);
}finally{
logger.info("scope provider reset");
ScopeProvider.instance.set(currentScope);
}
}
/**
* Gets the end points.
*
* @return the end points
*/
public List<String> getEndPoints() {
return endPoints;
}
// private static String[] scopes = {"" +
// "/d4science.research-infrastructures.eu/gCubeApps",
// "/d4science.research-infrastructures.eu/FARM",
// "/d4science.research-infrastructures.eu/D4Research",
// "/d4science.research-infrastructures.eu/OpenAIRE",
// "/d4science.research-infrastructures.eu/Edison",
// "/d4science.research-infrastructures.eu/SmartArea",
// "/d4science.research-infrastructures.eu/SoBigData"};
static PrintWriter reportPrintWriter;
static PrintWriter errorPrintWriter;
/**
* The main method.
*
* @param args the arguments
*/
public static void main(String[] args) {
FileWriter reportWriter = null;
final String ckanResource = "org.gcube.data.access.ckanconnector.CkanConnector";
final String serviceName = "CkanConnector";
final String serviceClass = "DataAccess";
final String rootScope = "/d4science.research-infrastructures.eu";
try{
reportWriter = new FileWriter("report_ckanconnector.csv", true);
BufferedWriter reportBW = new BufferedWriter(reportWriter);
reportPrintWriter = new PrintWriter(reportBW);
reportPrintWriter.println("NB.; SCOPE; END POINTS;");
try {
int i = 0;
Map<String, String> scopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
for (String scope : scopes.values()) {
System.out.println("Ckecking scope: "+scope);
ScopeProvider.instance.set(scope);
try{
i++;
GcoreEndpointReader reader = new GcoreEndpointReader(scope, serviceClass, serviceName, ckanResource);
System.out.println("Appending endpoints: "+reader.getEndPoints());
reportPrintWriter.println(i+"; "+scope+"; "+reader.getEndPoints());
}catch(Exception e){
i--;
e.printStackTrace();
}
}
}
catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}catch(Exception e){
e.printStackTrace();
}
finally{
if(reportPrintWriter!=null)
reportPrintWriter.close();
}
}
}

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@ -0,0 +1,221 @@
package resources;
import static org.gcube.resources.discovery.icclient.ICFactory.client;
import java.io.StringReader;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import javax.xml.parsers.DocumentBuilder;
import javax.xml.parsers.DocumentBuilderFactory;
import org.gcube.common.resources.gcore.utils.XPathHelper;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.scope.impl.ScopeBean;
import org.gcube.common.scope.impl.ScopeBean.Type;
import org.gcube.resources.discovery.client.api.DiscoveryClient;
import org.gcube.resources.discovery.client.queries.api.Query;
import org.gcube.resources.discovery.client.queries.impl.QueryBox;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.w3c.dom.Document;
import org.w3c.dom.Element;
import org.xml.sax.InputSource;
/**
* The Class GetAllInfrastructureScopes.
*
* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
*
* May 16, 2019
*/
public class GetAllInfrastructureScopes {
public static Logger logger = LoggerFactory.getLogger(GetAllInfrastructureScopes.class);
protected static final String RESOURCE_PROFILE_NAME_TEXT = "/Resource/Profile/Name/text()";
/**
* Load map of scope name to full scope.
*
* @param rootScope the root scope
* @return the map of binding between (VRE_NAME, FULL_SCOPE_OF_VRE_NAME)
* @throws Exception the exception
*/
public static Map<String, String> loadMapOfScopeNameToFullScope(String rootScope) throws Exception{
String originalScope = ScopeProvider.instance.get();
try{
ScopeBean scopeBean = null;
Map<String, String> scopeNameToFullScopeMap = new HashMap<String,String>();
ScopeProvider.instance.set(rootScope);
String secondaryType = Type.INFRASTRUCTURE.name();
scopeBean = new ScopeBean(rootScope);
logger.info("Added the couple ({},{}) as {} (NAME, FULL SCOPE) into map", scopeBean.name(), rootScope, secondaryType);
scopeNameToFullScopeMap.put(scopeBean.name(), rootScope);
List<String> listVOScopes = getListOfVOScopes(secondaryType);
logger.info("Searching for secondaryType={} the scope/s found is/are: " +secondaryType, listVOScopes);
//int noVOTypeCount = 0;
for (String voScope : listVOScopes) {
//int count = voScope.length() - voScope.replace("/", "").length();
scopeBean = new ScopeBean(voScope);
//IS A VO
//if(count==2){
if(scopeBean.is(Type.VO)){
secondaryType = Type.VO.name();
logger.info("{} is a {}...",voScope,secondaryType);
ScopeProvider.instance.set(voScope);
scopeBean = new ScopeBean(voScope);
logger.info("Added the couple ({},{}) as {} (NAME, FULL SCOPE) into map", scopeBean.name(), voScope, secondaryType);
scopeNameToFullScopeMap.put(scopeBean.name(), voScope);
secondaryType = Type.VRE.name();
List<String> listVREs = getListOfResourcesForSecondaryType(secondaryType);
logger.debug("VREs found for VO "+voScope+ " is/are "+listVREs.size()+ ": "+listVREs);
for (String vreName : listVREs) {
String vreScope = String.format("%s/%s", voScope,vreName);
scopeNameToFullScopeMap.put(vreName, vreScope);
}
}else{
//noVOTypeCount++;
logger.info(voScope +" is not a VO, skipping it");
}
}
/*System.out.println("Total VO is: "+(listVOScopes.size()+noVOTypeCount));
for (String vreName : vreNameFullScope.keySet()) {
System.out.println("VRE Name: "+vreName + " has scope: "+vreNameFullScope.get(vreName));
}*/
logger.info("Total VRE is: "+scopeNameToFullScopeMap.size());
return scopeNameToFullScopeMap;
}catch(Exception e ){
throw new Exception("Error on loading the map of VRE nameto scope: ", e);
}
finally{
if(originalScope!=null && !originalScope.isEmpty()){
ScopeProvider.instance.set(originalScope);
}else
ScopeProvider.instance.reset();
}
}
/**
* Gets the list of resources for secondary type.
*
* @param secondaryType the secondary type
* @return the list of resource names for the input secondary type
*/
private static List<String> getListOfResourcesForSecondaryType(String secondaryType) {
String queryString = "for $profile in collection('/db/Profiles/GenericResource')//Resource " +
"where $profile/Profile/SecondaryType/string() eq '"+secondaryType+"' return $profile";
List<String> listResourceName = new ArrayList<String>();
try {
logger.info("Trying to fetch GenericResource in the scope: "+ScopeProvider.instance.get()+", SecondaryType: " + secondaryType);
Query q = new QueryBox(queryString);
DiscoveryClient<String> client = client();
List<String> listGenericResources = client.submit(q);
logger.info("# of GenericResource returned are: "+listGenericResources.size());
if (listGenericResources == null || listGenericResources.size() == 0)
throw new Exception("GenericResource with SecondaryType: " + secondaryType + ", is not registered in the scope: "+ScopeProvider.instance.get());
else {
for (String genericResource : listGenericResources) {
try{
String elem = genericResource;
DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
Document document = docBuilder.parse(new InputSource(new StringReader(elem)));
Element rootElement = document.getDocumentElement();
XPathHelper helper = new XPathHelper(rootElement);
List<String> resourceNames = helper.evaluate(RESOURCE_PROFILE_NAME_TEXT);
if(resourceNames!=null && resourceNames.size()>0)
listResourceName.add(resourceNames.get(0));
}catch(Exception e){
throw new Exception("Error during parsing the generic resource: "+genericResource + " in the scope: "+ScopeProvider.instance.get());
}
}
}
} catch (Exception e) {
logger.error("Error while trying to fetch generic resource from the infrastructure", e);
}
return listResourceName;
}
/**
* Gets the list of resources for secondary type.
*
* @param secondaryType the secondary type
* @return the list of resource names for the input secondary type
*/
private static List<String> getListOfVOScopes(String secondaryType) {
String queryString = "for $profile in collection('/db/Profiles/GenericResource')//Resource " +
"where $profile/Profile/SecondaryType/string() eq '"+secondaryType+"' return $profile";
List<String> listOfVOScopes = new ArrayList<String>();
try {
logger.info("Trying to fetch GenericResource in the scope: "+ScopeProvider.instance.get()+", SecondaryType: " + secondaryType);
Query q = new QueryBox(queryString);
DiscoveryClient<String> client = client();
List<String> listGenericResources = client.submit(q);
logger.info("# of GenericResource returned searching for secondaryType= "+secondaryType+" is/are: "+listGenericResources.size());
if (listGenericResources == null || listGenericResources.size() == 0)
throw new Exception("GenericResource with SecondaryType: " + secondaryType + ", is not registered in the scope: "+ScopeProvider.instance.get());
else {
for (String genericResource : listGenericResources) {
try{
String elem = genericResource;
DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
Document document = docBuilder.parse(new InputSource(new StringReader(elem)));
Element rootElement = document.getDocumentElement();
XPathHelper helper = new XPathHelper(rootElement);
// List<String> resourceNames = helper.evaluate(RESOURCE_PROFILE_NAME_TEXT);
//
// if(resourceNames!=null && resourceNames.size()>0)
// listResourceName.add(resourceNames.get(0));
List<String> scopes = helper.evaluate("/Resource/Profile/Body/infrastructures/infrastructure/vos/vo/scope/text()");
for (String scopeFound : scopes) {
listOfVOScopes.add(scopeFound);
}
}catch(Exception e){
throw new Exception("Error during parsing the generic resource: "+genericResource + " in the scope: "+ScopeProvider.instance.get());
}
}
}
} catch (Exception e) {
logger.error("Error while trying to fetch generic resource from the infrastructure", e);
}
return listOfVOScopes;
}
}

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@ -15,19 +15,10 @@ import java.nio.file.StandardCopyOption;
import java.util.List;
import java.util.Map;
import javax.ws.rs.core.Response;
import javax.ws.rs.core.Response.ResponseBuilder;
import org.apache.commons.io.FilenameUtils;
import org.apache.commons.io.IOUtils;
import org.apache.http.HttpStatus;
import org.gcube.common.storagehub.client.StreamDescriptor;
import org.gcube.common.storagehub.client.plugins.AbstractPlugin;
import org.gcube.common.storagehub.client.proxies.ItemManagerClient;
import org.gcube.datatransfer.resolver.applicationprofile.ApplicationProfileReader;
import org.gcube.datatransfer.resolver.services.StorageHubResolver;
import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
import org.gcube.datatransfer.resolver.shub.StorageHubMetadataResponseBuilder;
import org.gcube.datatransfer.resolver.util.HTTPCallsUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -42,7 +33,7 @@ import org.slf4j.LoggerFactory;
public class TestResolvers {
public static final String URI_RESOLVER_SERVICE_ENDPOINT = "https://data1-d.d4science.net";
public static final String URI_RESOLVER_SERVICE_ENDPOINT = "https://data.dev.d4science.org";
public static final Logger logger = LoggerFactory.getLogger(TestResolvers.class);

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@ -12,3 +12,9 @@
/preprod.gcubekey
/pred4s.gcubekey
/log4j.properties
/D4OS.gcubekey
/D4Research.gcubekey
/OpenAIRE.gcubekey
/ParthenosVO.gcubekey
/SmartArea.gcubekey
/SoBigData.gcubekey