Removed -SNAPSHOT to be released
This commit is contained in:
parent
c1abd152e3
commit
4113507376
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@ -4,7 +4,7 @@
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All notable changes to this project will be documented in this file.
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This project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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## [v2.8.1-SNAPSHOT] - 2022-06-13
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## [v2.8.1] - 2022-06-13
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**New**
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2
pom.xml
2
pom.xml
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@ -9,7 +9,7 @@
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</parent>
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<groupId>org.gcube.data.transfer</groupId>
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<artifactId>uri-resolver</artifactId>
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<version>2.8.1-SNAPSHOT</version>
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<version>2.8.1</version>
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<packaging>war</packaging>
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<description>The URI Resolver is an HTTP URI resolver implemented as a REST service which gives access trough HTTP to different gcube Resolvers and gCube Applications.</description>
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@ -0,0 +1,158 @@
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package catalogue;
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/**
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*
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*/
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import java.io.BufferedWriter;
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import java.io.FileWriter;
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import java.io.PrintWriter;
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import java.util.ArrayList;
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import java.util.List;
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import java.util.Map;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.spatial.data.geonetwork.LoginLevel;
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import org.junit.Test;
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import resources.GcoreEndpointReader;
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import resources.GetAllInfrastructureScopes;
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/**
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* The Class CatalogueMatching_SCOPE_CKANCONNECTOR.
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*
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* @author Francesco Mangiacrapa at ISTI-CNR francesco.mangiacrapa@isti.cnr.it
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*
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* Jun 7, 2022
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*/
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public class CatalogueMatching_SCOPE_CKANCONNECTOR {
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// GN CONFIGURATIONS
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static String rootScope = "/d4science.research-infrastructures.eu";
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// static String rootScope = "/pred4s";
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// static String rootScope = "/gcube";
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static LoginLevel loginLevel = LoginLevel.CKAN;
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static PrintWriter reportPrintWriter;
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static PrintWriter errorPrintWriter;
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private static int c = 0;
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/**
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* Test catalogue discovery.
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*
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* @throws Exception the exception
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*/
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@Test
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public void testCatalogueDiscovery() throws Exception {
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try {
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FileWriter reportWriter = new FileWriter(rootScope.substring(1, rootScope.length()) + "_report_"
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+ CatalogueMatching_SCOPE_CKANCONNECTOR.class.getSimpleName() + ".csv", true);
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FileWriter errorWriter = new FileWriter(rootScope.substring(1, rootScope.length()) + "_error_"
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+ CatalogueMatching_SCOPE_CKANCONNECTOR.class.getSimpleName() + ".csv", true);
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BufferedWriter reportBW = new BufferedWriter(reportWriter);
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BufferedWriter errorBW = new BufferedWriter(errorWriter);
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reportPrintWriter = new PrintWriter(reportBW);
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reportPrintWriter.println("NB.; SCOPE; CKAN_CONNECTOR_URL;");
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errorPrintWriter = new PrintWriter(errorBW);
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errorPrintWriter.println("NB.; SCOPE; ERROR MESSAGE;");
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} catch (Exception e) {
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e.printStackTrace();
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}
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// final Path destination = Paths.get("report_matching_gn_catalogue.csv");
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// Files.w(re, destination);
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List<String> scopesProd = new ArrayList<String>();
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// RuntimeResourceReader readerRR;
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try {
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// MODE-1
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// readerRR = new RuntimeResourceReader(rootScope, platformName, null);
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// System.out.println(readerRR.toString());
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// System.out.println("Using GN: "+readerRR.getParameters());
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// System.out.println("Scopes are: "+readerRR.getScopes().size());
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// scopesProd.addAll(readerRR.getScopes());
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// MODE-2
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Map<String, String> mapScopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
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scopesProd.addAll(mapScopes.values());
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} catch (Exception e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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System.out.println("Read " + scopesProd.size() + " VREs from root scope: " + rootScope);
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for (String vre : scopesProd) {
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System.out.println("VRE: " + vre);
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}
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int count = 0;
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try {
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final String ckanResource = "org.gcube.data.access.ckanconnector.CkanConnector";
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final String serviceName = "CkanConnector";
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final String serviceClass = "DataAccess";
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int totalScope = scopesProd.size();
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int reportOp = 0;
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int errorOp = 0;
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for (String scope : scopesProd) {
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count++;
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System.out.println("#### Operation "+ count+ " of "+totalScope+") Fetching scope: " + scope);
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ScopeProvider.instance.set(scope);
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GcoreEndpointReader reader = null;
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try {
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// discovery = new GCatClientDiscovery();
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reader = new GcoreEndpointReader(scope, serviceClass, serviceName, ckanResource);
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} catch (Exception e) {
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System.out.println("gCat not instanciable in the scope: " + scope);
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errorOp++;
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writeError(errorOp + "; " + scope + " ; " + e.getMessage());
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}
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if (reader != null) {
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reportOp++;
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writeReport(reportOp + "; " + scope + " ; " + reader.getEndPoints().get(0) + " ; ");
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}
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System.out.println("Sleeping...");
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Thread.sleep(500);
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}
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} catch (Exception e) {
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e.printStackTrace();
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} finally {
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if (reportPrintWriter != null)
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reportPrintWriter.close();
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if (errorPrintWriter != null)
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errorPrintWriter.close();
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System.out.println("Performed fetching from " + count + " scopes");
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System.out.println("FINISHED!!!");
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}
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}
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/**
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* Write report.
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*
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* @param newline the newline
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*/
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private static synchronized void writeReport(String newline) {
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c++;
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reportPrintWriter.println(newline);
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}
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/**
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* Write error.
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*
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* @param newline the newline
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*/
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private static synchronized void writeError(String newline) {
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c++;
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errorPrintWriter.println(newline);
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}
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}
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@ -1,23 +1,10 @@
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package org.gcube.datatransfer.test;
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import javax.ws.rs.core.Response;
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import javax.ws.rs.core.Response.ResponseBuilder;
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import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.common.storagehub.client.StreamDescriptor;
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import org.gcube.common.storagehub.client.plugins.AbstractPlugin;
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import org.gcube.common.storagehub.client.proxies.ItemManagerClient;
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import org.gcube.datatransfer.resolver.catalogue.resource.CkanCatalogueConfigurationsReader;
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import org.gcube.datatransfer.resolver.catalogue.resource.GatewayCKANCatalogueReference;
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import org.gcube.datatransfer.resolver.init.UriResolverSmartGearManagerInit;
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import org.gcube.datatransfer.resolver.services.CatalogueResolver;
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import org.gcube.datatransfer.resolver.services.StorageHubResolver;
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import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
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import org.gcube.datatransfer.resolver.shub.StorageHubMetadataResponseBuilder;
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import org.junit.Before;
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import org.junit.Test;
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import com.itextpdf.text.log.SysoCounter;
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/**
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@ -34,7 +21,7 @@ public class StorageHubTest {
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private static String vreName = "BlueBridgeProject";
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private String rootContextScope = "/d4science.research-infrastructures.eu";
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private String authorizationToken = "ea16e0fa-722a-4589-83b0-0a731d2d4039-843339462";
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private String authorizationToken = "";
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//@Before
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public void init() {
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@ -0,0 +1,161 @@
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package resources;
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import static org.gcube.resources.discovery.icclient.ICFactory.client;
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import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
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import java.io.BufferedWriter;
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import java.io.FileWriter;
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import java.io.PrintWriter;
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import java.io.Serializable;
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import java.util.List;
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import java.util.Map;
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import org.gcube.common.resources.gcore.GCoreEndpoint;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.resources.discovery.client.api.DiscoveryClient;
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import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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/**
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* The Class GcoreEndpointReader.
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*
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* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
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* Jun 10, 2016
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*/
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public class GcoreEndpointReader implements Serializable{
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private static final long serialVersionUID = 7631710353375893823L;
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private static final Logger logger = LoggerFactory.getLogger(GcoreEndpointReader.class);
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private List<String> endPoints;
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/**
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* Instantiates a new gcore endpoint reader.
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*
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* @param scope the scope
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* @throws Exception the exception
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*/
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public GcoreEndpointReader(String scope, String serviceClass, String serviceName, String ckanResource) throws Exception {
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String currentScope = ScopeProvider.instance.get();
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try{
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logger.info("set scope "+scope);
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ScopeProvider.instance.set(scope);
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SimpleQuery query = queryFor(GCoreEndpoint.class);
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query.addCondition(String.format("$resource/Profile/ServiceClass/text() eq '%s'",serviceClass));
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query.addCondition("$resource/Profile/DeploymentData/Status/text() eq 'ready'");
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query.addCondition(String.format("$resource/Profile/ServiceName/text() eq '%s'",serviceName));
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query.addCondition(String.format("$resource/Scopes/Scope/text()[.='%s']", scope)); // i.e. check the resource contains among the scopes this one
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query.setResult("$resource/Profile/AccessPoint/RunningInstanceInterfaces//Endpoint[@EntryName/string() eq \""+ckanResource+"\"]/text()");
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logger.debug("submitting quey "+query.toString());
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DiscoveryClient<String> client = client();
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List<String> endpoints = client.submit(query);
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if (endpoints == null || endpoints.isEmpty()) throw new Exception("Cannot retrieve the GCoreEndpoint serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope);
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for (String endpoint : endpoints) {
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System.out.println("end point "+endpoint);
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}
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this.endPoints = endpoints;
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if(endPoints==null)
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throw new Exception("Endpoint:"+ckanResource+", is null for serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope);
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logger.info("found entyname "+endPoints+" for ckanResource: "+ckanResource);
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/*Group<Endpoint> accessPoints = se.profile().endpoints();
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if(accessPoints.size()==0) throw new Exception("Endpoint in serviceName serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope +" not found");
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Endpoint ep = accessPoints.iterator().next();
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String epName = ep.name();
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System.out.println(epName);*/
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}catch(Exception e){
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String error = "An error occurred during GCoreEndpoint discovery, serviceName: "+serviceName +", serviceClass: " +serviceClass +", in scope: "+scope +".";
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logger.error(error, e);
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throw new Exception(error);
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}finally{
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logger.info("scope provider reset");
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ScopeProvider.instance.set(currentScope);
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}
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}
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/**
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* Gets the end points.
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*
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* @return the end points
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*/
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public List<String> getEndPoints() {
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return endPoints;
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}
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// private static String[] scopes = {"" +
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// "/d4science.research-infrastructures.eu/gCubeApps",
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// "/d4science.research-infrastructures.eu/FARM",
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// "/d4science.research-infrastructures.eu/D4Research",
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// "/d4science.research-infrastructures.eu/OpenAIRE",
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// "/d4science.research-infrastructures.eu/Edison",
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// "/d4science.research-infrastructures.eu/SmartArea",
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// "/d4science.research-infrastructures.eu/SoBigData"};
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static PrintWriter reportPrintWriter;
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static PrintWriter errorPrintWriter;
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/**
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* The main method.
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*
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* @param args the arguments
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*/
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public static void main(String[] args) {
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FileWriter reportWriter = null;
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final String ckanResource = "org.gcube.data.access.ckanconnector.CkanConnector";
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final String serviceName = "CkanConnector";
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final String serviceClass = "DataAccess";
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final String rootScope = "/d4science.research-infrastructures.eu";
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try{
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reportWriter = new FileWriter("report_ckanconnector.csv", true);
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BufferedWriter reportBW = new BufferedWriter(reportWriter);
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reportPrintWriter = new PrintWriter(reportBW);
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reportPrintWriter.println("NB.; SCOPE; END POINTS;");
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try {
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int i = 0;
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Map<String, String> scopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
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for (String scope : scopes.values()) {
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System.out.println("Ckecking scope: "+scope);
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ScopeProvider.instance.set(scope);
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try{
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i++;
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GcoreEndpointReader reader = new GcoreEndpointReader(scope, serviceClass, serviceName, ckanResource);
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System.out.println("Appending endpoints: "+reader.getEndPoints());
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reportPrintWriter.println(i+"; "+scope+"; "+reader.getEndPoints());
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}catch(Exception e){
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i--;
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e.printStackTrace();
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}
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}
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}
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catch (Exception e) {
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// TODO Auto-generated catch block
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e.printStackTrace();
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}
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}catch(Exception e){
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e.printStackTrace();
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}
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finally{
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if(reportPrintWriter!=null)
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reportPrintWriter.close();
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}
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}
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}
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@ -0,0 +1,221 @@
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package resources;
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import static org.gcube.resources.discovery.icclient.ICFactory.client;
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import java.io.StringReader;
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import java.util.ArrayList;
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import java.util.HashMap;
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import java.util.List;
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import java.util.Map;
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import javax.xml.parsers.DocumentBuilder;
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import javax.xml.parsers.DocumentBuilderFactory;
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import org.gcube.common.resources.gcore.utils.XPathHelper;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.common.scope.impl.ScopeBean;
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import org.gcube.common.scope.impl.ScopeBean.Type;
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import org.gcube.resources.discovery.client.api.DiscoveryClient;
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import org.gcube.resources.discovery.client.queries.api.Query;
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import org.gcube.resources.discovery.client.queries.impl.QueryBox;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.w3c.dom.Document;
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import org.w3c.dom.Element;
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import org.xml.sax.InputSource;
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/**
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* The Class GetAllInfrastructureScopes.
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*
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* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
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*
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* May 16, 2019
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*/
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public class GetAllInfrastructureScopes {
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public static Logger logger = LoggerFactory.getLogger(GetAllInfrastructureScopes.class);
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protected static final String RESOURCE_PROFILE_NAME_TEXT = "/Resource/Profile/Name/text()";
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/**
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* Load map of scope name to full scope.
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*
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* @param rootScope the root scope
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* @return the map of binding between (VRE_NAME, FULL_SCOPE_OF_VRE_NAME)
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* @throws Exception the exception
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*/
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public static Map<String, String> loadMapOfScopeNameToFullScope(String rootScope) throws Exception{
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String originalScope = ScopeProvider.instance.get();
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try{
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ScopeBean scopeBean = null;
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Map<String, String> scopeNameToFullScopeMap = new HashMap<String,String>();
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ScopeProvider.instance.set(rootScope);
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String secondaryType = Type.INFRASTRUCTURE.name();
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scopeBean = new ScopeBean(rootScope);
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logger.info("Added the couple ({},{}) as {} (NAME, FULL SCOPE) into map", scopeBean.name(), rootScope, secondaryType);
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||||
scopeNameToFullScopeMap.put(scopeBean.name(), rootScope);
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||||
List<String> listVOScopes = getListOfVOScopes(secondaryType);
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||||
logger.info("Searching for secondaryType={} the scope/s found is/are: " +secondaryType, listVOScopes);
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||||
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||||
//int noVOTypeCount = 0;
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||||
for (String voScope : listVOScopes) {
|
||||
//int count = voScope.length() - voScope.replace("/", "").length();
|
||||
scopeBean = new ScopeBean(voScope);
|
||||
//IS A VO
|
||||
//if(count==2){
|
||||
if(scopeBean.is(Type.VO)){
|
||||
secondaryType = Type.VO.name();
|
||||
logger.info("{} is a {}...",voScope,secondaryType);
|
||||
ScopeProvider.instance.set(voScope);
|
||||
scopeBean = new ScopeBean(voScope);
|
||||
logger.info("Added the couple ({},{}) as {} (NAME, FULL SCOPE) into map", scopeBean.name(), voScope, secondaryType);
|
||||
scopeNameToFullScopeMap.put(scopeBean.name(), voScope);
|
||||
secondaryType = Type.VRE.name();
|
||||
List<String> listVREs = getListOfResourcesForSecondaryType(secondaryType);
|
||||
logger.debug("VREs found for VO "+voScope+ " is/are "+listVREs.size()+ ": "+listVREs);
|
||||
for (String vreName : listVREs) {
|
||||
String vreScope = String.format("%s/%s", voScope,vreName);
|
||||
scopeNameToFullScopeMap.put(vreName, vreScope);
|
||||
}
|
||||
|
||||
}else{
|
||||
//noVOTypeCount++;
|
||||
logger.info(voScope +" is not a VO, skipping it");
|
||||
}
|
||||
}
|
||||
|
||||
/*System.out.println("Total VO is: "+(listVOScopes.size()+noVOTypeCount));
|
||||
for (String vreName : vreNameFullScope.keySet()) {
|
||||
System.out.println("VRE Name: "+vreName + " has scope: "+vreNameFullScope.get(vreName));
|
||||
}*/
|
||||
|
||||
logger.info("Total VRE is: "+scopeNameToFullScopeMap.size());
|
||||
return scopeNameToFullScopeMap;
|
||||
|
||||
}catch(Exception e ){
|
||||
throw new Exception("Error on loading the map of VRE nameto scope: ", e);
|
||||
}
|
||||
finally{
|
||||
if(originalScope!=null && !originalScope.isEmpty()){
|
||||
ScopeProvider.instance.set(originalScope);
|
||||
}else
|
||||
ScopeProvider.instance.reset();
|
||||
}
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Gets the list of resources for secondary type.
|
||||
*
|
||||
* @param secondaryType the secondary type
|
||||
* @return the list of resource names for the input secondary type
|
||||
*/
|
||||
private static List<String> getListOfResourcesForSecondaryType(String secondaryType) {
|
||||
|
||||
String queryString = "for $profile in collection('/db/Profiles/GenericResource')//Resource " +
|
||||
"where $profile/Profile/SecondaryType/string() eq '"+secondaryType+"' return $profile";
|
||||
|
||||
List<String> listResourceName = new ArrayList<String>();
|
||||
|
||||
try {
|
||||
logger.info("Trying to fetch GenericResource in the scope: "+ScopeProvider.instance.get()+", SecondaryType: " + secondaryType);
|
||||
Query q = new QueryBox(queryString);
|
||||
DiscoveryClient<String> client = client();
|
||||
List<String> listGenericResources = client.submit(q);
|
||||
|
||||
logger.info("# of GenericResource returned are: "+listGenericResources.size());
|
||||
|
||||
if (listGenericResources == null || listGenericResources.size() == 0)
|
||||
throw new Exception("GenericResource with SecondaryType: " + secondaryType + ", is not registered in the scope: "+ScopeProvider.instance.get());
|
||||
else {
|
||||
|
||||
|
||||
for (String genericResource : listGenericResources) {
|
||||
try{
|
||||
String elem = genericResource;
|
||||
DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
|
||||
Document document = docBuilder.parse(new InputSource(new StringReader(elem)));
|
||||
Element rootElement = document.getDocumentElement();
|
||||
XPathHelper helper = new XPathHelper(rootElement);
|
||||
List<String> resourceNames = helper.evaluate(RESOURCE_PROFILE_NAME_TEXT);
|
||||
|
||||
if(resourceNames!=null && resourceNames.size()>0)
|
||||
listResourceName.add(resourceNames.get(0));
|
||||
|
||||
}catch(Exception e){
|
||||
throw new Exception("Error during parsing the generic resource: "+genericResource + " in the scope: "+ScopeProvider.instance.get());
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
} catch (Exception e) {
|
||||
logger.error("Error while trying to fetch generic resource from the infrastructure", e);
|
||||
}
|
||||
|
||||
return listResourceName;
|
||||
|
||||
}
|
||||
|
||||
|
||||
/**
|
||||
* Gets the list of resources for secondary type.
|
||||
*
|
||||
* @param secondaryType the secondary type
|
||||
* @return the list of resource names for the input secondary type
|
||||
*/
|
||||
private static List<String> getListOfVOScopes(String secondaryType) {
|
||||
|
||||
String queryString = "for $profile in collection('/db/Profiles/GenericResource')//Resource " +
|
||||
"where $profile/Profile/SecondaryType/string() eq '"+secondaryType+"' return $profile";
|
||||
|
||||
List<String> listOfVOScopes = new ArrayList<String>();
|
||||
|
||||
try {
|
||||
logger.info("Trying to fetch GenericResource in the scope: "+ScopeProvider.instance.get()+", SecondaryType: " + secondaryType);
|
||||
Query q = new QueryBox(queryString);
|
||||
DiscoveryClient<String> client = client();
|
||||
List<String> listGenericResources = client.submit(q);
|
||||
|
||||
logger.info("# of GenericResource returned searching for secondaryType= "+secondaryType+" is/are: "+listGenericResources.size());
|
||||
|
||||
if (listGenericResources == null || listGenericResources.size() == 0)
|
||||
throw new Exception("GenericResource with SecondaryType: " + secondaryType + ", is not registered in the scope: "+ScopeProvider.instance.get());
|
||||
else {
|
||||
|
||||
|
||||
for (String genericResource : listGenericResources) {
|
||||
try{
|
||||
String elem = genericResource;
|
||||
DocumentBuilder docBuilder = DocumentBuilderFactory.newInstance().newDocumentBuilder();
|
||||
Document document = docBuilder.parse(new InputSource(new StringReader(elem)));
|
||||
Element rootElement = document.getDocumentElement();
|
||||
XPathHelper helper = new XPathHelper(rootElement);
|
||||
// List<String> resourceNames = helper.evaluate(RESOURCE_PROFILE_NAME_TEXT);
|
||||
//
|
||||
// if(resourceNames!=null && resourceNames.size()>0)
|
||||
// listResourceName.add(resourceNames.get(0));
|
||||
|
||||
List<String> scopes = helper.evaluate("/Resource/Profile/Body/infrastructures/infrastructure/vos/vo/scope/text()");
|
||||
for (String scopeFound : scopes) {
|
||||
listOfVOScopes.add(scopeFound);
|
||||
}
|
||||
|
||||
}catch(Exception e){
|
||||
throw new Exception("Error during parsing the generic resource: "+genericResource + " in the scope: "+ScopeProvider.instance.get());
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
||||
} catch (Exception e) {
|
||||
logger.error("Error while trying to fetch generic resource from the infrastructure", e);
|
||||
}
|
||||
|
||||
return listOfVOScopes;
|
||||
|
||||
}
|
||||
}
|
||||
Loading…
Reference in New Issue