Added Test classes

This commit is contained in:
Francesco Mangiacrapa 2023-03-17 14:30:11 +01:00
parent 938fff31fb
commit 6a6f013689
11 changed files with 1239 additions and 14 deletions

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@ -1,5 +1,5 @@
<?xml version="1.0" encoding="UTF-8"?><project-modules id="moduleCoreId" project-version="1.5.0">
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<wb-module deploy-name="uri-resolver-2.8.1-SNAPSHOT">
<wb-module deploy-name="uri-resolver-2.8.1">
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<wb-resource deploy-path="/" source-path="/target/m2e-wtp/web-resources"/>
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<wb-resource deploy-path="/" source-path="/src/main/webapp" tag="defaultRootSource"/>
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<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/java"/>
@ -59,7 +64,8 @@
<wb-resource deploy-path="/WEB-INF/classes" source-path="/src/main/resources"/>
@ -71,7 +77,8 @@
<property name="context-root" value="uri-resolver"/>
@ -83,7 +90,8 @@
<property name="java-output-path" value="/uri-resolver/target/classes"/>
@ -95,7 +103,8 @@
</wb-module>

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package gis;
import java.util.HashMap;
import java.util.Iterator;
import java.util.Map;
import org.gcube.common.encryption.StringEncrypter;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.GeoNetwork;
import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
import org.gcube.spatial.data.geonetwork.GeoNetworkReader;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.gcube.spatial.data.geonetwork.configuration.Configuration;
import org.gcube.spatial.data.geonetwork.model.Account;
import org.gcube.spatial.data.geonetwork.model.Account.Type;
import org.junit.Test;
import it.geosolutions.geonetwork.util.GNSearchRequest;
import it.geosolutions.geonetwork.util.GNSearchResponse;
import it.geosolutions.geonetwork.util.GNSearchResponse.GNMetadata;
/**
* The Class GeonetworkQueryTest.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
* Aug 31, 2016
*/
public class GeonetworkQueryTest {
private static final int MAX = 30;
//private String[] scopes = {"/gcube/devsec/devVRE"};
//private String[] scopes = {"/gcube/devsec/StaTabTest"};
//private String[] scopes = {"/gcube/devsec/devVRE"};
//private String[] scopes = {"/pred4s/preprod/preVRE"};
//private String[] scopes = {"/d4science.research-infrastructures.eu"};
//private String[] scopesProd = {"/d4science.research-infrastructures.eu/gCubeApps/fisheriesandecosystematmii"};
//private String[] scopesProd = {"/d4science.research-infrastructures.eu/D4Research"};
//private String[] scopesProd = {"/d4science.research-infrastructures.eu"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/BlueBridgeProject"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/AquacultureAtlasGeneration"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/FrenchTropicalTunaAtlas"};
private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/BiodiversityLab"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/SIASPA"};
//private String[] scopes = {"/d4science.research-infrastructures.eu/gCubeApps/ICCAT_BFT-E"};
private LoginLevel loginLevel = LoginLevel.CKAN;
private Type accountType = Type.CKAN;
private String textToSearch = "geo_fea";
/**
* Gets the count.
*
* @return the count
* @throws Exception the exception
*/
//@Test
public void getCount() throws Exception{
try{
for(String scope:scopes){
ScopeProvider.instance.set(scope);
GeoNetworkPublisher reader=GeoNetwork.get();
Configuration config = reader.getConfiguration();
Account account=config.getScopeConfiguration().getAccounts().get(accountType);
// Configuration config = gnInstance.getGeonetworkPublisher().getConfiguration();
// Account account = config.getScopeConfiguration().getAccounts().get(Type.CKAN);
//System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
System.out.println("USER: "+account.getUser()+", Pwd: "+account.getPassword());
System.out.println("GN: "+config.getGeoNetworkEndpoint());
try{
String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
System.out.println("Decrypted Password: "+decryptedPassword);
}catch(Exception e){
System.out.println("ignoring exception during pwd decrypting");
}
// req.addParam("keyword", "Thredds");
final GNSearchRequest req=new GNSearchRequest();
// req.addParam(GNSearchRequest.Param.any,"Thredds");
GNSearchResponse resp = reader.query(req);
int publicCount=resp.getCount();
System.out.println("Public UUIDs are: "+publicCount);
Map<Long,String> publicUUIDs = getUUIDs(resp);
System.out.println("Filled list of Public UUIDs with: "+publicUUIDs.size());
System.out.println("Public layers are: ");
printLayers(publicUUIDs);
reader.login(loginLevel);
resp = reader.query(req);
int totalCount=resp.getCount();
System.out.println("All UUIDs are: "+totalCount);
Map<Long,String> allUUIDs = getUUIDs(resp);
System.out.println("Filled list of All UUIDs with: "+allUUIDs.size());
System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
System.out.println("Private layers are: ");
allUUIDs.keySet().removeAll(publicUUIDs.keySet());
printLayers(allUUIDs);
/*if(totalCount==0)
return;
try{
int last = totalCount<MAX?totalCount:MAX;
for(int i=0; i<last; i++){
String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
System.out.println(i+") UUID: "+resp.getMetadata(i).getUUID() + " ID: "+resp.getMetadata(i).getId());
//System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
}
}catch(Exception e ){
e.printStackTrace();
}*/
System.out.println("DONE!!!");
}
}catch(Exception e){
e.printStackTrace();
}
}
/**
* Prints the layers.
*
* @param layersUUIDs the layers UUI ds
*/
public void printLayers(Map<Long,String> layersUUIDs) {
int index = 0;
for (Long key : layersUUIDs.keySet()) {
index++;
System.out.println(index+") ID: "+key+" - UUID: "+layersUUIDs.get(key));
}
}
/**
* Gets the UUI ds.
*
* @param resp the resp
* @return the UUI ds
*/
public static Map<Long,String> getUUIDs(GNSearchResponse resp){
Map<Long,String> listUUIDs = new HashMap<Long,String>();
Iterator<GNMetadata> iterator = resp.iterator();
while(iterator.hasNext()) {
GNMetadata meta = iterator.next();
//listUUIDs.add(new GN_META_REF(meta.getId(), meta.getUUID()));
listUUIDs.put(meta.getId(), meta.getUUID());
//System.out.println("Added: "+meta.getUUID());
}
return listUUIDs;
}
/**
* Gets the layers by search.
*
* @return the layers by search
* @throws Exception the exception
*/
//@Test
public void getLayersBySearch() throws Exception{
try{
for(String scope:scopes){
ScopeProvider.instance.set(scope);
GeoNetworkPublisher reader=GeoNetwork.get();
Configuration config = reader.getConfiguration();
Account account=config.getScopeConfiguration().getAccounts().get(accountType);
//System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
try{
String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
System.out.println("Decrypted Password: "+decryptedPassword);
}catch(Exception e){
System.out.println("ignoring exception during pwd decrypting");
}
// req.addParam("keyword", "Thredds");
//final GNSearchRequest req=new GNSearchRequest();
final GNSearchRequest req = getRequest(true, textToSearch);
// req.addParam(GNSearchRequest.Param.any,"Thredds");
GNSearchResponse resp = reader.query(req);
int publicCount=resp.getCount();
reader.login(loginLevel);
int totalCount=reader.query(req).getCount();
System.out.println("QUERY "+textToSearch);
System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
// if(totalCount==0)
// return;
// try{
// int last = totalCount>MAX?totalCount:MAX;
//
// for(int i=0; i<last; i++){
// //String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
// GNMetadata xml = resp.getMetadata(i);
// //System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
// System.out.println(xml.toString());
// }
// }catch(Exception e ){
// e.printStackTrace();
// }
}
}catch(Exception e){
e.printStackTrace();
}
}
/**
* Contains string.
*
* @param txt the txt
* @param value the value
* @return true, if successful
*/
private boolean containsString(String txt, String value){
return txt.contains(value);
}
/**
* Gets the request.
*
* @param sortByTitle the sort by title
* @param textToSearch the text to search
* @return the request
*/
public GNSearchRequest getRequest(boolean sortByTitle, String textToSearch) {
GNSearchRequest req = new GNSearchRequest();
if(sortByTitle)
req.addConfig(GNSearchRequest.Config.sortBy, "title");
if(textToSearch==null || textToSearch.isEmpty()){
req.addParam(GNSearchRequest.Param.any, textToSearch);
System.out.println("search by any text");
}else{
req.addParam(GNSearchRequest.Param.title, textToSearch);
req.addConfig(GNSearchRequest.Config.similarity, "1");
System.out.println("search by title");
}
System.out.println("text to search "+textToSearch);
return req;
}
/**
* The Class GN_META_REF.
*
* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
*
* May 20, 2019
*/
public static class GN_META_REF{
Long id;
String uuid;
/**
* Gets the id.
*
* @return the id
*/
public Long getId() {
return id;
}
/**
* Sets the id.
*
* @param id the new id
*/
public void setId(Long id) {
this.id = id;
}
/**
* Gets the uuid.
*
* @return the uuid
*/
public String getUuid() {
return uuid;
}
/**
* Sets the uuid.
*
* @param uuid the new uuid
*/
public void setUuid(String uuid) {
this.uuid = uuid;
}
/**
* Instantiates a new gn meta ref.
*
* @param id the id
* @param uuid the uuid
*/
public GN_META_REF(Long id, String uuid) {
super();
this.id = id;
this.uuid = uuid;
}
/* (non-Javadoc)
* @see java.lang.Object#toString()
*/
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("GN_META_REF [id=");
builder.append(id);
builder.append(", uuid=");
builder.append(uuid);
builder.append("]");
return builder.toString();
}
}
/**
* Gets the count prod.
*
* @return the count prod
* @throws Exception the exception
*/
// @Test
public void getCountProd() throws Exception{
try{
for(String scope:scopes){
ScopeProvider.instance.set(scope);
GeoNetworkReader reader=GeoNetwork.get();
final GNSearchRequest req=new GNSearchRequest();
// req.addParam("keyword", "Thredds");
// req.addParam(GNSearchRequest.Param.any,"Oscar");
int publicCount=reader.query(req).getCount();
reader.login(loginLevel);
int totalCount=reader.query(req).getCount();
System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
}
}catch (Exception e) {
e.printStackTrace();
}
}
}

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//package gis;
//import it.geosolutions.geonetwork.util.GNSearchRequest;
//import it.geosolutions.geonetwork.util.GNSearchResponse;
//
//import java.io.BufferedInputStream;
//import java.io.BufferedReader;
//import java.io.FileNotFoundException;
//import java.io.FileReader;
//import java.io.IOException;
//import java.io.InputStream;
//import java.util.ArrayList;
//import java.util.List;
//import java.util.stream.Collectors;
//
//import javax.xml.parsers.DocumentBuilder;
//import javax.xml.parsers.DocumentBuilderFactory;
//
//import org.gcube.common.encryption.StringEncrypter;
//import org.gcube.common.scope.api.ScopeProvider;
//import org.gcube.spatial.data.geonetwork.GeoNetwork;
//import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
//import org.gcube.spatial.data.geonetwork.LoginLevel;
//import org.gcube.spatial.data.geonetwork.configuration.Configuration;
//import org.gcube.spatial.data.geonetwork.model.Account;
//import org.gcube.spatial.data.geonetwork.model.Account.Type;
//import org.slf4j.Logger;
//import org.slf4j.LoggerFactory;
//import org.w3c.dom.Document;
//import org.w3c.dom.Element;
//import org.w3c.dom.NodeList;
//
///**
// *
// * @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
// * Aug 31, 2016
// */
//public class ICCATQueryTest {
//
// private static final int MAX = 200;
//
// //private String[] scopes = {"/gcube/devNext/NextNext"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu"};
//
// private static String[] scopesProd = {"/d4science.research-infrastructures.eu/gCubeApps/ICCAT_BFT-E"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu/gCubeApps/fisheriesandecosystematmii"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu/D4Research"};
//
// //private String[] scopesProd = {"/d4science.research-infrastructures.eu"};
//
// private static LoginLevel loginLevel = LoginLevel.CKAN;
//
// private static Type accountType = Type.SCOPE;
//
// private static String textToSearch = "geo_fea";
//
// private static Logger logger = LoggerFactory.getLogger(ICCATQueryTest.class);
//
// private static enum LAYER_TYPE {PRIVATE, PUBLIC, ALL}
//
//
// public static List<String> getLayers(LAYER_TYPE type) throws Exception{
//
// try{
// for(String scope:scopesProd){
// ScopeProvider.instance.set(scope);
// GeoNetworkPublisher reader=GeoNetwork.get();
//
// Configuration config = reader.getConfiguration();
// Account account=config.getScopeConfiguration().getAccounts().get(accountType);
//
// //System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
// System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
//
// try{
// String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
// System.out.println("Decrypted Password: "+decryptedPassword);
// }catch(Exception e){
// System.out.println("ignoring exception during pwd decrypting");
// }
//
//
// // req.addParam("keyword", "Thredds");
// final GNSearchRequest req=new GNSearchRequest();
//// req.addParam(GNSearchRequest.Param.any,"Thredds");
// GNSearchResponse resp = reader.query(req);
// int publicCount=resp.getCount();
//
// List<String> publicLayers = new ArrayList<String>();
// for(int i=0; i<publicCount; i++)
// publicLayers.add(resp.getMetadata(i).getUUID());
//
// System.out.println("Public layers are: "+publicLayers.size());
//
// //PERFOMING LOGIN TO GET ALL LAYERS
// reader.login(loginLevel);
// resp = reader.query(req);
// int totalCount=resp.getCount();
// int privateCount = totalCount-publicCount;
//
// System.out.println("SCOPE "+scope+" found "+totalCount+" (public : "+publicCount+", private :"+privateCount+")");
//
// List<String> privateLayers = new ArrayList<String>();
// for(int i=0; i<totalCount; i++){
//
// String uuid = resp.getMetadata(i).getUUID();
// //System.out.println("Searching UUID: "+uuid);
// if(!publicLayers.contains(uuid)){
// privateLayers.add(uuid);
// }
//
//// String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
//// InputStream stream = new ByteArrayInputStream(xml.getBytes(StandardCharsets.UTF_8));
//// iccatGNUUID.add(toGetFileIdentifier(stream));
//
// //System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
// }
//
// System.out.println("Private layers are: "+privateLayers.size());
//
//
// switch (type) {
// case PUBLIC:
// return publicLayers;
// case PRIVATE:
// return privateLayers;
// case ALL:
// publicLayers.addAll(privateLayers);
// return publicLayers;
// default:
// break;
// }
// }
// }catch(Exception e){
// e.printStackTrace();
// }
// return null;
// }
//
// /**
// * Override summary record.
// *
// * @param doc the doc
// * @param identifier the identifier
// * @return true, if successful
// */
// private static String getFileIdentifierValue(Document doc) {
//
// // <csw:SummaryRecord> list
// NodeList nodes = doc.getElementsByTagName("gmd:MD_Metadata");
// logger.debug("gmd:MD_Metadata are: " + nodes.getLength());
// for (int i = 0; i < nodes.getLength(); i++) {
// Element mdMetadata = (Element) nodes.item(i);
//
// // <dc:identifier>
// NodeList fileIdentifierLst = mdMetadata.getElementsByTagName("gmd:fileIdentifier");
// if(fileIdentifierLst==null || fileIdentifierLst.getLength()==0 || fileIdentifierLst.item(0)==null){
// logger.info("skipping, it has not fileidentifier");
// return null;
// }
//
// Element id = (Element) fileIdentifierLst.item(0);
//
// NodeList gcoLst = id.getElementsByTagName("gco:CharacterString");
// if(gcoLst==null || gcoLst.getLength()==0 || gcoLst.item(0)==null){
// logger.info("skipping, it has not gco:CharacterString");
// return null;
// }
//
// Element gco = (Element) gcoLst.item(0);
// String idValue = gco.getTextContent();
// logger.trace("Summary gmd:fileIdentifier is: " + idValue);
// return idValue;
// }
//
// return null;
// }
//
// /**
// * Removes the summary ids by list ids.
// *
// * @param getRecordsResponse the get records response
// * @param idsToRemove the ids to remove
// * @return the input stream
// * @throws IOException Signals that an I/O exception has occurred.
// */
// public static String toGetFileIdentifier(InputStream getRecordResponse) throws IOException {
//
// try {
// // logger.trace("getRecordsResponse is: "+IOUtils.toString(getRecordsResponse));
// BufferedInputStream bis = new BufferedInputStream(getRecordResponse);
// DocumentBuilderFactory dbf = DocumentBuilderFactory.newInstance();
// dbf.setValidating(false);
// DocumentBuilder db = dbf.newDocumentBuilder();
// Document doc = db.parse(bis);
// return getFileIdentifierValue(doc);
// }
// catch (Exception e) {
// logger.error("An error occurred during removing IDS by List: ", e);
// return null;
// }
// }
//
//
// public static List<String> fileReader() throws FileNotFoundException{
//
// String fileName = "iccat_name_catalogue.csv";
//
//// //read file into stream, try-with-resources
//// try (Stream<String> stream = Files.lines(Paths.get(fileName))) {
////
//// stream.forEach(System.out::println);
////
//// } catch (IOException e) {
//// e.printStackTrace();
//// }
//
// FileReader reportReader = new FileReader(fileName);
// //Stream<String> stream = reportBW.lines();
// List<String> list = new ArrayList<>();
// try (BufferedReader reportBW = new BufferedReader(reportReader)){
//
// list = reportBW.lines().collect(Collectors.toList());
//
// }catch (Exception e) {
// e.printStackTrace();
// }
//
// return list;
// }
//
//
// public static void main(String[] args) {
//
// List<String> listCKAN;
// try {
// listCKAN = fileReader();
// System.out.println("CKAN Layers are: "+listCKAN.size());
//// for (String line : listCKAN) {
//// System.out.println("CKAN UUID: "+line);
//// }
//
// List<String> listLayersUUID = getLayers(LAYER_TYPE.PUBLIC);
// System.out.println("List Layers UUID are: "+listLayersUUID.size());
//// for (String line : listLayersUUID) {
//// System.out.println("PRIVATE GN UUID: "+line);
//// }
//
//
// listCKAN.removeAll(listLayersUUID);
//
// System.out.println("\n\n\nCKAN contains other: "+listCKAN.size());
// for (String line : listCKAN) {
// System.out.println("CKAN UUID: "+line);
// }
//
// }catch (Exception e) {
// // TODO Auto-generated catch block
// e.printStackTrace();
// }
//
//
//
// }
//}

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/**
*
*/
package gis;
import it.geosolutions.geonetwork.util.GNSearchRequest;
import it.geosolutions.geonetwork.util.GNSearchResponse;
import resources.GetAllInfrastructureScopes;
import java.io.BufferedWriter;
import java.io.FileWriter;
import java.io.PrintWriter;
import java.util.ArrayList;
import java.util.List;
import java.util.Map;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.GeoNetwork;
import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.junit.Test;
/**
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
* Mar 10, 2017
*/
public class LayersMatchingGN_CKAN {
//GN CONFIGURATIONS
public static String rootScope = "/d4science.research-infrastructures.eu";
//static String rootScope = "/pred4s";
// static String rootScope = "/gcube";
public static String platformName = "geonetwork";
public static LoginLevel loginLevel = LoginLevel.ADMIN;
//static Type accountType = Type.SCOPE;
public static String textToSearch = "geo_fea";
public static PrintWriter reportPrintWriter;
public static PrintWriter errorPrintWriter;
public static void main(String[] args) {
try{
FileWriter reportWriter = new FileWriter(rootScope.substring(1,rootScope.length())+"_report_matching_gn_catalogue.csv", true);
FileWriter errorWriter = new FileWriter(rootScope.substring(1,rootScope.length())+"_error_matching_gn_catalogue.csv", true);
BufferedWriter reportBW = new BufferedWriter(reportWriter);
BufferedWriter errorBW = new BufferedWriter(errorWriter);
reportPrintWriter = new PrintWriter(reportBW);
reportPrintWriter.println("NB.; SCOPE; GN Endpoint; TOTAL LAYERS; PUBLIC LAYERS; PRIVATE LAYERS");
errorPrintWriter = new PrintWriter(errorBW);
errorPrintWriter.println("SCOPE;");
}catch(Exception e){
e.printStackTrace();
}
// final Path destination = Paths.get("report_matching_gn_catalogue.csv");
// Files.w(re, destination);
List<String> scopesProd = new ArrayList<String>();
//RuntimeResourceReader readerRR;
try {
//MODE-1
// readerRR = new RuntimeResourceReader(rootScope, platformName, null);
// System.out.println(readerRR.toString());
// System.out.println("Using GN: "+readerRR.getParameters());
// System.out.println("Scopes are: "+readerRR.getScopes().size());
// scopesProd.addAll(readerRR.getScopes());
//MODE-2
Map<String,String> mapScopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
scopesProd.addAll(mapScopes.values());
}
catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
System.out.println("Read "+scopesProd.size() +" VREs from root scope: "+rootScope);
int i = 0;
for (String vre : scopesProd) {
System.out.println(++i +"; "+vre);
}
System.out.println("Scope found: "+scopesProd.size());
int count = 0;
try{
for(String scope:scopesProd){
count++;
System.out.println("\n\n#"+count+" of "+scopesProd.size()+ " - Fetching scope: "+scope);
ScopeProvider.instance.set(scope);
GeoNetworkPublisher reader = null;
String gnEP = null;
try{
reader=GeoNetwork.get();
gnEP = reader.getConfiguration().getGeoNetworkEndpoint();
}catch (Exception e) {
System.out.println("GeoNetwork not instanciable in the scope: "+scope);
writeError(count+"; "+scope+" ; "+e.getMessage());
}
if(reader!=null){
// Configuration config = reader.getConfiguration();
// Account account=config.getScopeConfiguration().getAccounts().get(accountType);
//
// //System.out.println("User: "+account.getUser()+", Pwd: "+account.getPassword());
// System.out.println("Admin: "+config.getAdminAccount().getUser()+", Pwd: "+config.getAdminAccount().getPassword());
//
// try{
// String decryptedPassword = StringEncrypter.getEncrypter().decrypt(account.getPassword());
// System.out.println("Decrypted Password: "+decryptedPassword);
// }catch(Exception e){
// System.out.println("ignoring exception during pwd decrypting");
// }
// req.addParam("keyword", "Thredds");
final GNSearchRequest req=new GNSearchRequest();
// req.addParam(GNSearchRequest.Param.any,"Thredds");
GNSearchResponse resp = reader.query(req);
int publicCount=resp.getCount();
reader.login(loginLevel);
int totalCount=reader.query(req).getCount();
//System.out.println("SCOPE "+scope+" ; found "+totalCount+" (public : "+publicCount+", private :"+(totalCount-publicCount)+")");
writeReport(count+"; "+scope+" ; "+gnEP+"; "+totalCount+" ; "+publicCount+"; "+(totalCount-publicCount));
if(totalCount==0)
return;
// try{
// int last = totalCount>MAX?totalCount:MAX;
// for(int i=0; i<last; i++){
// String xml = reader.getByIdAsRawString(resp.getMetadata(i).getUUID());
// System.out.println(i+") is Thredds? "+containsString(xml, "Thredds"));
// }
// }catch(Exception e ){
// e.printStackTrace();
// }
}
}
}catch(Exception e){
e.printStackTrace();
}finally{
if(reportPrintWriter!=null)
reportPrintWriter.close();
if(errorPrintWriter!=null)
errorPrintWriter.close();
System.out.println("Performed fetching from "+count+" scopes");
System.out.println("FINISHED!!!");
}
}
private static void writeReport(String newline){
reportPrintWriter.println(newline);
}
private static void writeError(String newline){
errorPrintWriter.println(newline);
}
}

View File

@ -0,0 +1,166 @@
package gis;
import static org.gcube.resources.discovery.icclient.ICFactory.clientFor;
import static org.gcube.resources.discovery.icclient.ICFactory.queryFor;
import java.util.ArrayList;
import java.util.List;
import org.gcube.common.encryption.StringEncrypter;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.common.resources.gcore.ServiceEndpoint;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
import org.gcube.resources.discovery.client.api.DiscoveryClient;
import org.gcube.resources.discovery.client.queries.api.SimpleQuery;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
/**
* The Class RuntimeResourceReader.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it Mar 10, 2017
*/
public class RuntimeResourceReader {
// public static final String GEONETWORK_END_POINT =
// "http://geonetwork.d4science.org/geonetwork";
public static final Logger logger = LoggerFactory.getLogger(RuntimeResourceReader.class);
// private List<String> scopes = new ArrayList<String>();
private List<ServiceEndpointBean> listSE = new ArrayList<ServiceEndpointBean>();
/**
* Instantiates a new runtime resource reader.
*
* @param scope the scope
* @param platformName the platform name
* @param endPoint the end point
* @throws Exception the exception
*/
public RuntimeResourceReader(String scope, String platformName, String category, String endPoint) throws Exception {
read(scope, platformName, category, endPoint);
}
/**
* Read.
*
* @param scope the scope
* @param platformName the platform name
* @param endPoint the end point
* @return the server parameters
* @throws Exception the exception
*/
private List<ServiceEndpointBean> read(String scope, String platformName, String category, String endPoint)
throws Exception {
String originalScope = null;
try {
originalScope = ScopeProvider.instance.get();
ScopeProvider.instance.set(scope);
SimpleQuery query = queryFor(ServiceEndpoint.class);
query.addCondition("$resource/Profile/Platform/Name/text() eq '" + platformName + "'");
query.addCondition("$resource/Profile/Category/text() eq '" + category + "'");
if (endPoint != null && !endPoint.isEmpty())
query.addCondition("$resource/Profile/AccessPoint/Interface/Endpoint/text() eq '" + endPoint + "'");
// query.addVariable("$prop", "$resource/Profile/AccessPoint/Properties/Property")
// .addCondition("$prop/Name/text() eq 'priority'")
// .addCondition("$prop/Value/text() eq '1'");
logger.info("GeoRuntimeReader, using scope: " + scope + ", to get resource: " + platformName);
DiscoveryClient<ServiceEndpoint> client = clientFor(ServiceEndpoint.class);
List<ServiceEndpoint> listServiceEndpoint = client.submit(query);
if (listServiceEndpoint == null || listServiceEndpoint.isEmpty())
throw new Exception("Cannot retrieve the runtime resource: " + platformName);
for (ServiceEndpoint serviceEndpoint : listServiceEndpoint) {
ServiceEndpointBean seb = new ServiceEndpointBean();
seb.setRuntime(serviceEndpoint.profile().runtime());
List<AccessPoint> listAp = new ArrayList<ServiceEndpoint.AccessPoint>();
try {
for (AccessPoint accessPoint : serviceEndpoint.profile().accessPoints()) {
listAp.add(accessPoint);
}
} catch (Exception e) {
System.err.println("Error on reading Access point not found");
}
System.out.println("sono qui");
seb.setListAP(listAp);
listSE.add(seb);
}
} catch (Exception e) {
logger.error("Sorry, an error occurred on reading parameters in Runtime Resources", e);
} finally {
if (originalScope != null && !originalScope.isEmpty()) {
ScopeProvider.instance.set(originalScope);
logger.info("scope provider setted to orginal scope: " + originalScope);
} else {
ScopeProvider.instance.reset();
logger.info("scope provider reset");
}
}
return listSE;
}
public List<ServiceEndpointBean> getListSE() {
return listSE;
}
/**
* The main method.
*
* @param args the arguments
*/
public static void main(String[] args) {
String scope = "/gcube/devsec/devVRE";
String platformName = "GeoServer";
//scope = "/pred4s/preprod/preVRE";
RuntimeResourceReader reader;
try {
ScopeProvider.instance.set(scope);
reader = new RuntimeResourceReader(scope, "postgis", "Database", null);
for (ServiceEndpointBean seb : reader.getListSE()) {
System.out.println("Found: " + seb);
List<AccessPoint> listAp = seb.getListAP();
for (AccessPoint ap : listAp) {
System.out.println("username: " + ap.username());
System.out.println("password: " + ap.password());
try{
String decryptedPassword = StringEncrypter.getEncrypter().decrypt(ap.password());
System.out.println("Decrypted Password: "+decryptedPassword);
}catch(Exception e){
System.out.println("ignoring exception during pwd decrypting");
}
}
}
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
}
}

View File

@ -0,0 +1,167 @@
/**
*
*/
package gis;
import it.geosolutions.geonetwork.util.GNSearchRequest;
import it.geosolutions.geonetwork.util.GNSearchResponse;
import resources.GetAllInfrastructureScopes;
import java.io.BufferedWriter;
import java.io.FileWriter;
import java.io.PrintWriter;
import java.util.ArrayList;
import java.util.HashSet;
import java.util.List;
import java.util.Map;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
import org.gcube.common.scope.api.ScopeProvider;
import org.gcube.spatial.data.geonetwork.GeoNetwork;
import org.gcube.spatial.data.geonetwork.GeoNetworkPublisher;
import org.gcube.spatial.data.geonetwork.LoginLevel;
import org.junit.Test;
import com.itextpdf.text.log.SysoCounter;
/**
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it Mar 10, 2017
*/
public class SE_Harvester_from_IS {
// GN CONFIGURATIONS
public static String rootScope = "/d4science.research-infrastructures.eu";
// static String rootScope = "/pred4s";
// static String rootScope = "/gcube";
public static final String platformName = "geoserver";
public static final String category = "Gis";
public static LoginLevel loginLevel = LoginLevel.ADMIN;
public static PrintWriter reportPrintWriter;
public static PrintWriter errorPrintWriter;
public static HashSet<String> uniqueGNs = new HashSet<String>();
public static void main(String[] args) {
try {
FileWriter reportWriter = new FileWriter(
rootScope.substring(1, rootScope.length()) + "_report_" + platformName + "_harvester.csv", true);
FileWriter errorWriter = new FileWriter(
rootScope.substring(1, rootScope.length()) + "_error_" + platformName + "_harvester.csv", true);
BufferedWriter reportBW = new BufferedWriter(reportWriter);
BufferedWriter errorBW = new BufferedWriter(errorWriter);
reportPrintWriter = new PrintWriter(reportBW);
reportPrintWriter.println("NB.; SCOPE; SE Hosted_On; SE AccessPoint;");
errorPrintWriter = new PrintWriter(errorBW);
errorPrintWriter.println("SCOPE;");
} catch (Exception e) {
e.printStackTrace();
}
// final Path destination = Paths.get("report_matching_gn_catalogue.csv");
// Files.w(re, destination);
List<String> listScopes = new ArrayList<String>();
// RuntimeResourceReader readerRR;
try {
// MODE-1
// readerRR = new RuntimeResourceReader(rootScope, platformName, null);
// System.out.println(readerRR.toString());
// System.out.println("Using GN: "+readerRR.getParameters());
// System.out.println("Scopes are: "+readerRR.getScopes().size());
// scopesProd.addAll(readerRR.getScopes());
// MODE-2
Map<String, String> mapScopes = GetAllInfrastructureScopes.loadMapOfScopeNameToFullScope(rootScope);
listScopes.addAll(mapScopes.values());
} catch (Exception e) {
// TODO Auto-generated catch block
e.printStackTrace();
}
System.out.println("Read " + listScopes.size() + " VREs from root scope: " + rootScope);
int i = 0;
for (String vre : listScopes) {
System.out.println(++i + "; " + vre);
}
System.out.println("Scope found: " + listScopes.size());
try {
searchFor(listScopes, platformName, category);
searchFor(listScopes, "GeoServer", category);
System.out.println("\n\nUnique " + platformName + " addresses");
uniqueGNs.stream().forEach(s -> System.out.println(s));
} catch (Exception e) {
e.printStackTrace();
} finally {
if (reportPrintWriter != null)
reportPrintWriter.close();
if (errorPrintWriter != null)
errorPrintWriter.close();
System.out.println("Performed fetching from " + listScopes.size() + " scopes");
System.out.println("FINISHED!!!");
}
}
private static void searchFor(List<String> listScopes, String platformName, String category) {
int count = 0;
int writerCount = 0;
try {
for (String scope : listScopes) {
count++;
System.out.println("\n\n#" + count + " of " + listScopes.size() + " - Fetching scope: " + scope);
RuntimeResourceReader rrr = new RuntimeResourceReader(scope, platformName, category, null);
List<ServiceEndpointBean> listSE = rrr.getListSE();
for (ServiceEndpointBean seb : listSE) {
StringBuilder sb = new StringBuilder();
for (AccessPoint ap : seb.getListAP()) {
sb.append(ap.address());
sb.append(", ");
uniqueGNs.add(ap.address());
}
sb.toString();
writerCount++;
writeReport(
writerCount + "; " + scope + " ; " + seb.getRuntime().hostedOn() + "; " + sb.toString());
}
Thread.sleep(200);
// if(count==10)
// break;
}
} catch (Exception e) {
e.printStackTrace();
}
}
private static void writeReport(String newline) {
reportPrintWriter.println(newline);
}
private static void writeError(String newline) {
errorPrintWriter.println(newline);
}
}

View File

@ -0,0 +1,60 @@
package gis;
import java.io.Serializable;
import java.util.List;
import org.gcube.common.resources.gcore.ServiceEndpoint.AccessPoint;
/**
* The Class ServerParameters.
*
* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it May 16, 2017
*/
public class ServiceEndpointBean implements Serializable {
/**
*
*/
private static final long serialVersionUID = 2459971193655529274L;
protected org.gcube.common.resources.gcore.ServiceEndpoint.Runtime runtime;
protected List<AccessPoint> listAP;
public ServiceEndpointBean() {
// TODO Auto-generated constructor stub
}
public ServiceEndpointBean(org.gcube.common.resources.gcore.ServiceEndpoint.Runtime runtime, List<AccessPoint> listAP) {
super();
this.runtime = runtime;
this.listAP = listAP;
}
public org.gcube.common.resources.gcore.ServiceEndpoint.Runtime getRuntime() {
return runtime;
}
public List<AccessPoint> getListAP() {
return listAP;
}
public void setRuntime(org.gcube.common.resources.gcore.ServiceEndpoint.Runtime runtime2) {
this.runtime = runtime2;
}
public void setListAP(List<AccessPoint> listAP) {
this.listAP = listAP;
}
@Override
public String toString() {
StringBuilder builder = new StringBuilder();
builder.append("ServiceEndpoint [runtime=");
builder.append(runtime);
builder.append(", listAP=");
builder.append(listAP);
builder.append("]");
return builder.toString();
}
}

View File

@ -49,7 +49,7 @@ public class GeonetworkResolverTest {
/*String scopeValue ="/gcube/devsec/devVRE";
String remainValue = "/srv/en/mef.export";
String queryString = "scope=/gcube/devsec/devVRE&remainPath=/srv/en/mef.export&version=2.0.2&request=GetCapabilities&service=CSW";
ServerParameters geonetworkParams = new ServerParameters("http://geoserver-dev2.d4science-ii.research-infrastructures.eu/geonetwork", "", "");
ServiceEndpointParameters geonetworkParams = new ServiceEndpointParameters("http://geoserver-dev2.d4science-ii.research-infrastructures.eu/geonetwork", "", "");
String newQueryString = purgeScopeFromQueryString(scopeValue, queryString);
logger.info("Purged query string from "+scopeValue+" is: "+newQueryString);

View File

@ -18,7 +18,7 @@ public class GisResolverTest {
public static void main(String[] args) {
GisResolver gisResolver = new GisResolver();
ScopeProvider.instance.set(scope);
//ServerParameters geonetworkParams = getCachedServerParameters(scope);
//ServiceEndpointParameters geonetworkParams = getCachedServerParameters(scope);
try {
GisLayerItem gisLayerItem = gisResolver.getGisLayerForLayerUUID(null, scope, gisUUID);
} catch (Exception e) {
@ -33,7 +33,7 @@ public class GisResolverTest {
String scope = "/gcube/devsec/devVRE";
String UUID = "177e1c3c-4a22-4ad9-b015-bfc443d16cb8";
try {
ServerParameters geonetworkParams = gisResolver.getCachedServerParameters(scope);
ServiceEndpointParameters geonetworkParams = gisResolver.getCachedServerParameters(scope);
String wmsRequest = gisResolver.getLayerWmsRequest(scope, UUID, geonetworkParams);
System.out.println("Final url is: " + wmsRequest);
wmsRequest = URLEncoder.encode(wmsRequest, UTF_8);

View File

@ -84,7 +84,7 @@ public class ServiceEndpointReader {
if (accessPointPwd != null) {
accessPointPwd = StringEncrypter.getEncrypter().decrypt(accessPointPwd);
LOG.info("Decrypted pwd registered into Access Point '" + accessPoint.name() + "' is: "
+ accessPointPwd.substring(0,accessPointPwd.length()/2)+"...");
+ accessPointPwd+"...");
System.out.println("AccessPoint pwd is: "+accessPointPwd);
}

View File

@ -12,3 +12,9 @@
/preprod.gcubekey
/pred4s.gcubekey
/log4j.properties
/D4OS.gcubekey
/D4Research.gcubekey
/OpenAIRE.gcubekey
/ParthenosVO.gcubekey
/SmartArea.gcubekey
/SoBigData.gcubekey