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619 Commits

Author SHA1 Message Date
Sandro La Bruzzo cdfb7588dd code formatting 2023-11-30 15:31:42 +01:00
Sandro La Bruzzo 5e22b67b8a Merge remote-tracking branch 'origin/beta' into orcid_import 2023-11-30 15:27:46 +01:00
Claudio Atzori 6f10791e77 Merge branch 'beta' into propagationapi 2023-11-30 14:20:18 +01:00
Claudio Atzori 4e1aac2e2f resolved conflict in pom.xml before applying the changes from [COAR based resource types & Irish tender] #350 2023-11-29 14:37:52 +01:00
Sandro La Bruzzo 86b5775e08 added vocabulary in instanceTypeMapping for 
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
 2023-11-29 13:15:43 +01:00
Sandro La Bruzzo af1c2634b3 added instanceTypeMapping original field in the mapping of 
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
 2023-11-29 12:45:30 +01:00
Miriam Baglioni 8eb70e6657 refactoring 2023-11-27 15:13:15 +01:00
Sandro La Bruzzo 34a4b3cbdf Implemented ORCID Enrichment 2023-11-24 12:39:58 +01:00
Sandro La Bruzzo 6ce36b3e41 Implemented ORCID Workflow on DHP-Aggregation for retrieving ORCID DUMP and generating tables 2023-11-14 12:04:29 +01:00
Serafeim Chatzopoulos 2090003ea9 Adjust tests to new WF input params 2023-10-26 13:47:06 -07:00
Serafeim Chatzopoulos a82aaf57b2 Renaming input param for crossref input path 2023-10-25 12:05:02 -07:00
Serafeim Chatzopoulos aad5982bf1 Change the description of the workflow 2023-10-20 12:48:21 +03:00
Serafeim Chatzopoulos 6b19dcee80 Add actionset creation for pubmed affiliations 2023-10-19 19:58:25 +03:00
Claudio Atzori a460ebe215 [UnresolvedEntities] updated action name 2023-10-10 15:50:11 +02:00
Miriam Baglioni a431b04814 leftover for the properties and removal of bipfinder 2023-10-10 12:53:57 +02:00
Miriam Baglioni 110ce4b40f extend the fos model to include the level4 and the scores for level3 and level4. removed bip indicators from the instance 2023-10-10 09:46:40 +02:00
Claudio Atzori 84a58802ab [OC] using the common pid cleaning function 2023-10-06 14:48:05 +02:00
Claudio Atzori 46034630cf [OC] compress the output actionset 2023-10-06 14:42:02 +02:00
Claudio Atzori ee8a39e7d2 cleanup and refinements 2023-10-04 12:32:05 +02:00
Miriam Baglioni d7fccdc64b fixed paths in wf to match the req of the pathname 2023-10-02 14:10:57 +02:00
Miriam Baglioni 9898470b0e Addressing comments in D-Net/dnet-hadoop#340\#issuecomment-10592 2023-10-02 12:54:16 +02:00
Miriam Baglioni e84f5b5e64 extended existing codo to accomodate import of POCI from open citation 2023-10-02 09:25:16 +02:00
Claudio Atzori 4786aa0e09 added Archive ouverte UNIGE (ETHZ.UNIGENF, opendoar____::1400) to the Datacite hostedBy_map 2023-09-07 11:21:07 +02:00
Claudio Atzori 15666e86a8 added collectedfrom to the affiliation relations imported from Crossref 2023-09-04 15:56:06 +02:00
Serafeim Chatzopoulos 7de0164c26 Fix import of affiliations relations from Crossref 2023-09-04 16:04:41 +03:00
Miriam Baglioni 9c8b41475a Merge pull request '8172_impact_indicators_workflow' (#284) from 8172_impact_indicators_workflow into beta 
Reviewed-on: D-Net/dnet-hadoop#284
 2023-08-14 15:50:48 +02:00
Serafeim Chatzopoulos 97c1ba8918 Merge actionsets of results and projects 2023-08-11 15:56:53 +03:00
Serafeim Chatzopoulos 7cefe2665b Remove unnecessary classes 2023-07-28 19:14:39 +03:00
Serafeim Chatzopoulos 26a92ce762 Merge branch '8876' of https://code-repo.d4science.org/D-Net/dnet-hadoop into 8876 2023-07-28 19:03:57 +03:00
Serafeim Chatzopoulos ebfba38ab6 Add changes from code review 2023-07-28 19:03:47 +03:00
Serafeim Chatzopoulos eb8684a8cf Merge branch 'beta' into 8876 2023-07-28 13:39:33 +02:00
Giambattista Bloisi e64c2854a3 Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface 
JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
 2023-07-24 15:36:24 +02:00
Serafeim Chatzopoulos 2cc5b1a39b Fixes in workflow.xml 2023-07-21 15:26:50 +03:00
Serafeim Chatzopoulos be320ba3c1 Indentation fixes 2023-07-17 16:04:21 +03:00
Serafeim Chatzopoulos bc1a4611aa Minor changes 2023-07-17 11:17:53 +03:00
Serafeim Chatzopoulos 4eba14a80e Add oozie workflow 2023-07-06 21:07:50 +03:00
Serafeim Chatzopoulos c2998a14e8 Add basic tests for affiliation relations 2023-07-06 20:28:16 +03:00
Serafeim Chatzopoulos bc7b00bcd1 Add bi-directional affiliation relations 2023-07-06 18:29:15 +03:00
Serafeim Chatzopoulos 12528ed2ef Refactor PrepareAffiliationRelations.java to use OafMapperUtils common functions 2023-07-06 18:08:33 +03:00
Serafeim Chatzopoulos bbc245696e Prepare actionsets for BIP affiliations 2023-07-06 15:56:12 +03:00
Serafeim Chatzopoulos 347a889b20 Read affiliation relations 2023-07-06 00:51:01 +03:00
Miriam Baglioni 7738372125 [UsageCount] fixed typo in attribute name for datasource table 2023-06-30 18:56:41 +02:00
Michele Artini 88a1cbc37d fixed a datasource id 2023-06-22 07:56:33 +02:00
Alessia Bardi d5be6a13e9 Updated officialnmae of pangaea in hostedbymap for Datacite to avoid duplicate entries in the source filter of the portal 2023-06-06 14:43:32 +02:00
Claudio Atzori 8acad52a0c Merge branch 'beta' into apc_affiliation 2023-05-15 15:47:33 +02:00
Claudio Atzori 8a463cc3e8 fixed organization id created when mapping APC affiliations. Factored out ROR constants in dhp-common 2023-05-15 15:44:46 +02:00
Miriam Baglioni 78b07400c0 changed test classes 2023-05-15 11:37:08 +02:00
Miriam Baglioni 86fe886c1a removed the inverse of the Citing relation 2023-05-15 11:20:51 +02:00
Serafeim Chatzopoulos 815a4ddbba Add actionset creation for project bip indicators in workflow 2023-04-26 20:40:06 +03:00
Serafeim Chatzopoulos ee04cf92bf Add actionsets for project impact indicators 2023-04-26 20:23:46 +03:00
Claudio Atzori 24e2fd828b code formatting 2023-03-08 21:17:08 +01:00
Miriam Baglioni 0fff98a14c [ECclassification] removed print 2023-03-02 11:46:57 +01:00
Miriam Baglioni b0c2f7e526 [ECclassification] removed not needed resources 2023-03-02 11:44:48 +01:00
Miriam Baglioni d4fc62c2f6 mergin with branch beta 2023-03-02 11:14:54 +01:00
Miriam Baglioni de8ad1caef [ECclassification] new implementation for the H2020 classification 2023-03-02 11:14:03 +01:00
Miriam Baglioni c1f9848953 [ECclassification] added new classes 2023-03-01 15:29:11 +01:00
Claudio Atzori 16ad42e8f3 code formatting 2023-03-01 10:22:13 +01:00
Miriam Baglioni 4f2df876cd [ECclassification] new implementation first try 2023-02-28 14:44:00 +01:00
Claudio Atzori 2f7346e9cf WIP monodirectional citations, Datacite 2023-02-28 13:30:51 +01:00
Claudio Atzori 7aebedb43c code formatting 2023-02-27 11:51:27 +01:00
Miriam Baglioni 80987801d7 [FoS] added check for null on level1 subject 2023-02-27 11:40:22 +01:00
Claudio Atzori 31e97c2a6b [unresolved entities] updated oozie wf node labels 2023-02-27 11:38:29 +01:00
Miriam Baglioni 23112929e9 [FoS] changed the default separator from comma to tab to solve the issue in subject value split 2023-02-27 10:18:39 +01:00
Claudio Atzori 0c1be41b30 code formatting 2023-02-22 10:15:25 +01:00
Claudio Atzori 477a7c416f Merge branch 'beta' into UsageCountOnProjectAndDatasource 2023-02-22 09:55:51 +01:00
Miriam Baglioni 016337a0f9 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2023-02-16 15:54:59 +01:00
Claudio Atzori 9a03f71db1 code formatting 2023-02-13 16:25:47 +01:00
Miriam Baglioni 5cf902a2b0 [UsageCount] changed query to make the sum be computed via sql instead of grouping 2023-02-10 16:16:37 +01:00
Miriam Baglioni f803530df6 [UsageCount] fixed query 2023-02-10 15:50:56 +01:00
Miriam Baglioni bb5bba51b3 [UsageCount] extended test 2023-02-09 19:08:30 +01:00
Miriam Baglioni 85e53fad00 [UsageCount] addition of usagecount for Projects and datasources. Extention of the action set created for the results with new entities for projects and datasources. Extention of the resource set and modification of the testing class 2023-02-09 18:59:45 +01:00
Michele Artini 7b7520850b fixed an invalid char 2023-01-11 09:22:18 +01:00
Sandro La Bruzzo 3c9826f186 updated lines function to it's implementation linesWithSeparators.map(l => l.stripLineEnd) in this way we force scala plugin compiler to consider this pipeline scala code and not java.string.lines() pipeline 2022-12-21 11:21:17 +01:00
Sandro La Bruzzo 72f0d88d6c formatted code 2022-10-19 14:18:42 +02:00
Sandro La Bruzzo a1f94530a3 added documentation 2022-10-13 11:47:11 +02:00
Claudio Atzori f3f7604e6c trying to fix a test that fails only on Jenkins 2022-09-27 15:21:37 +02:00
Claudio Atzori 27a91841e7 WIP: cleaning of subjects 2022-08-04 11:39:39 +02:00
Claudio Atzori eb53b52f7c code formatting 2022-08-02 13:24:47 +02:00
Claudio Atzori 209c7e9dab [datacite] avoid UnsupportedOperationException 2022-08-01 09:05:35 +02:00
Claudio Atzori 92e48f12f7 [metadata collection] updated collector plugin name 2022-07-29 13:54:00 +02:00
Claudio Atzori f62c4e05cd code formatting 2022-07-29 11:56:01 +02:00
Claudio Atzori ed98a6d9d0 [Datacite mapping] include the older datacite prefixed OpenAIRE id among the originalId[] 2022-07-28 10:15:14 +02:00
Sandro La Bruzzo 67525076ec fixed test, now it compiles after commit a6977197b3 2022-07-26 15:35:17 +02:00
Claudio Atzori d43663d30f adapted RorActionSet test, it should not create parent/child rels 2022-07-25 17:54:10 +02:00
Claudio Atzori c3ede1b379 Merge branch 'beta' into pubmed_update 2022-07-25 14:10:22 +02:00
Claudio Atzori 1138b2ac8e code formatting 2022-07-19 14:15:49 +02:00
Sandro La Bruzzo 00168303db Added unit test to verify the generation in the OriginalID the old openaire Identifier generated by OAI 2022-07-14 10:19:59 +02:00
Sandro La Bruzzo 0a4f4d98fa added PMCId to PmArticle 2022-07-13 15:27:17 +02:00
Claudio Atzori 0cb1c70788 code formatting 2022-07-01 10:44:08 +02:00
Claudio Atzori 929b145130 code formatting 2022-06-21 23:07:06 +02:00
Claudio Atzori 06b5533d4c Merge branch 'beta' into 7096-fileGZip-collector-plugin 2022-06-16 09:22:16 +02:00
Alessia Bardi 88d531dc91 exclude FAIRsharing records from Datacite 2022-06-13 16:17:17 +02:00
Claudio Atzori b8cda65487 code formatting 2022-06-13 09:20:03 +02:00
Michele Artini 634869ce95 deleted hierarchical rels from ror action set 2022-06-13 09:12:21 +02:00
Michele Artini b94a791bc5 unit tests to transform cnr explora 2022-06-09 12:25:34 +02:00
Claudio Atzori d098ad0d93 [hb patch] updated map 2022-05-16 15:54:04 +02:00
Claudio Atzori 1dda11e031 [hb patch] updated map 2022-05-16 15:53:27 +02:00
Claudio Atzori 8dd5517548 code formatting 2022-05-16 14:35:24 +02:00
Michele Artini 46c07e0724 deleted hierarchical rels from ror action set 2022-05-16 09:39:54 +02:00
Miriam Baglioni 89657a0b78 [UsageCount] refactoring 2022-05-09 14:43:27 +02:00