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613 Commits

Author SHA1 Message Date
George Kalampokis c41c89774b Make Dataset Validation checker to no longer be exception depedant 2022-03-29 15:13:58 +03:00
George Kalampokis 3eb27c04f6 Fix critical issue with xml import 2022-03-29 11:32:52 +03:00
George Kalampokis 72507dd1b8 Fix issue with DMP json export if it have been imported from json 2022-03-29 10:57:06 +03:00
Bernaldo Mihasi 65b4e58aad attach images in word export 2022-03-17 10:47:50 +02:00
Konstantina Galouni 2a9d8b8296 #7528: [NEW] Upload files field type. 
1. Datasets.java: In "delete()" method, call also fileManager.markAllFilesOfEntityIdAsDeleted.
2. DatasetManager.java: Added method "deleteOldFilesAndAddNew()" which is called by "createOrUpdate()", to mark as deleted files that are not used any more and save the new ones.
3. DatabaseRepository.java & DatabaseRepositoryImpl.java: Include in DAOs FileUploadDAO.
4. ModelBuilder.java & ViewStyle.java: Incluse "upload" field type.
5. field-data.ts:
	a. In "getOrdinal()" method return Integer instead of int.
	b. In "getValidations()" method added null check.
	c. In methods "fromJsonObject()" and "toMap()" added special if clauses for "upload" field type.
6. application.properties:
   a. Added property "file.storage", to set the folder where the files will be permanently saved.
   b. Changed default spring.servlet.multipart.max-file-size and pring.servlet.multipart.max-request-size to 10 MB.
7. UserInvitationController.java: Deleted a print in System.out.
8. New files for upload field type: FileUploadDao.java, FileUploadDaoImpl.java, FileUpload.java, PostgreSQLEnumType.java (necessary for the enum EntityType), FileController.java, FileManager.java, UploadData.java.
 2022-03-16 12:14:08 +02:00
George Kalampokis dc06ba9201 Allow to return DMP with no Datasets for the Dataset Editor 2022-03-15 17:58:01 +02:00
George Kalampokis 563711eae4 Fix issue saving tags from template when the field is a textField 2022-03-15 17:52:58 +02:00
George Kalampokis ea72f64ed4 Replace DB DOIFunder with a json config file 2022-03-01 14:37:49 +02:00
George Kalampokis c3aff92cd4 Don't include Funder if it's not in the Doi Funder Table 2022-02-28 16:28:31 +02:00
George Kalampokis 5a3f871c58 Remove various unnecessary info messages 2022-02-28 15:24:10 +02:00
George Kalampokis 94a225cf9f Add Description on Dataset Export 2022-02-22 16:39:35 +02:00
Bernaldo Mihasi 494ee47620 zenodo prefilling customizations 2022-02-22 15:53:25 +02:00
George Kalampokis d1eab0d019 Fix issue with not showing datasets on all version listing 2022-02-22 11:30:22 +02:00
George Kalampokis b6c28be3b3 Optimize Dashboard's recent activity logic, removed various unused fields from Listing Models and implement toDataModel conversion logic in some models 2022-02-21 17:16:32 +02:00
George Kalampokis 71b1010ea1 Merge remote-tracking branch 'origin/Development' into Development 2022-02-18 17:52:04 +02:00
George Kalampokis d16e130dc6 Optimize general metric counter 2022-02-18 17:51:57 +02:00
George Kalampokis 11ff99fd77 Improve and generalize prefilling logic 2022-02-18 17:51:32 +02:00
argirok 3aa1c1ae59 fix issue with pub api #7326#note-5 the value was a number instaed of search 2022-02-18 17:41:33 +02:00
argirok cc926970ca Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 
 Conflicts:
	dmp-frontend/src/app/ui/admin/dataset-profile/editor/components/field/dataset-profile-editor-field.component.ts
 2022-02-18 17:09:34 +02:00
Bernaldo Mihasi da5ba952e1 rda export import tag bug, format preffiling fixed 2022-02-17 10:11:34 +02:00
George Kalampokis fac6a93c0a Fix minor worldBuilder issue and a minor refactor 2022-02-10 13:21:21 +02:00
George Kalampokis 4740fbe8e0 Refactor visibilityRuleService 2022-02-09 15:23:16 +02:00
argirok 938f98100f Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 2022-02-04 10:05:32 +02:00
Bernaldo Mihasi 125a97baed keyword-tags exported-imported fixes, prefilling more mapping 2022-01-28 14:55:52 +02:00
George Kalampokis 70d37cead1 Fix wrong metrics count for Dataset Template 2022-01-27 11:05:40 +02:00
argirok a3c4b3c143 Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 
 Conflicts:
	dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcherUtils.java
 2022-01-24 11:12:56 +02:00
argirok 858fa3ee71 #7326 - static APIs 
1. Rename of "Registries" to "Metadata"
2. add apis for taxonomy, licenses, publications
3. change data repositories: from querying all registered to all of type data repository
4. add separate APIs for journals and pub repositories
 2022-01-21 15:44:51 +02:00
George Kalampokis 5a70ce7602 Fix issue of not keeping dataset template users after version update 2022-01-13 13:26:30 +02:00
George Kalampokis db01f2d119 Add fixedMappings for prefilling 2022-01-12 11:43:32 +02:00
George Kalampokis 728ea9a24f Add prefilling backend endpoints 2021-12-10 15:37:39 +02:00
George Kalampokis 0a39e64f9a Merge remote-tracking branch 'origin/Development' into Development 2021-12-07 17:16:41 +02:00
George Kalampokis 33784f3ee2 Add missing null check up 2021-12-07 17:16:22 +02:00
Diamantis Tziotzios 2cb985c23c bug fix 2021-12-07 16:52:49 +02:00
Diamantis Tziotzios 197de17aa5 no message 2021-12-06 15:32:38 +02:00
George Kalampokis de4c430d91 Fix issue with related datasets on dashboard 2021-12-03 16:49:23 +02:00
George Kalampokis b2825c8369 Fix issue with parsing some custom auto complete sources 2021-12-02 18:03:31 +02:00
George Kalampokis 19aa2bd411 Fix critical issue with public datasets 2021-11-25 16:45:29 +02:00
George Kalampokis aed23a655b When exporting DMP to xml or json get only the active/finalized datasets and not the deleted ones 2021-11-24 18:14:24 +02:00
George Kalampokis fc71e95cf3 Make dataset queries to return distinct results (avoid duplicate Id issues) 2021-11-24 16:23:02 +02:00
George Kalampokis e546362f58 Fix issue with elasticsearch inconsistencies 2021-11-23 14:05:57 +02:00
Konstantina Galouni bb0c398120 #7183: In DMP invitation, return authors whose name/ email contains the query string given by user (case insensitive). 
1. InvitationsManager.java:  Added method "getUsersWithCriteria()" to filter results according to "userInfoRequestItem.getCriteria().getLike()".
2. UserInvitationController.java: In method "getUsers()" added parameter "@RequestBody UserInfoRequestItem userInfoRequestItem" and call new method "invitationsManager.getUsersWithCriteria()" (instead of getUsers()).
 2021-11-22 13:44:41 +02:00
George Kalampokis 38cd336bc9 Add transactional to makeFinalize on DMP and remove jackson parsing when depositing to zenodo 2021-11-18 18:27:20 +02:00
George Kalampokis 54b142000c Merge remote-tracking branch 'origin/Development' into Development 2021-11-09 14:23:30 +02:00
George Kalampokis 1a373bc6f8 Add email notification when a user is added to a Dataset Template (ref #7148) 2021-11-09 14:23:22 +02:00
Konstantina Galouni 71b8742b0f LicenseManager.java & LocalFetchManager.java & TagController.java: #7135: No case sensitivilty for licenses, managers and tags. 2021-11-09 14:17:46 +02:00
George Kalampokis a7badfd9d5 Add nexus prometheus metrics 2021-11-09 13:05:38 +02:00
George Kalampokis 58ecadd79b Fix issue with project creation 2021-11-09 10:19:20 +02:00
George Kalampokis 39795f177f Fix critical issue with file exports on chromium based web browsers 2021-11-02 14:50:20 +02:00
George Kalampokis fd26e2a742 Fix issue with DMP index not updating after a new user is invited 2021-10-27 18:16:44 +03:00
George Kalampokis e66362ec38 Add prometheus metric for the number of grants used based on DMP status (ref #6462) 2021-10-20 12:42:08 +03:00
George Kalampokis 942782fe3c Use metrics predifined names instead of plain Strings 2021-10-13 17:49:32 +03:00
George Kalampokis 65644c3a35 Add extra sanity checks 2021-10-13 17:47:50 +03:00
George Kalampokis a4fef8e462 Refactor PDF conversion 2021-10-12 18:17:16 +03:00
George Kalampokis 1a821179db Even more Fixes over dashboard's sorting 2021-10-12 18:06:14 +03:00
George Kalampokis 29919f981a Fix issue with recent activity sorting 2021-10-12 15:41:20 +03:00
George Kalampokis 7fe84d7de5 Eliminate Duplicate user when making a new version 2021-10-08 16:52:01 +03:00
George Kalampokis a3af8ce3a5 Merge branch 'spring-update' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/controllers/Admin.java
#	dmp-backend/web/src/main/java/eu/eudat/controllers/Login.java
#	dmp-backend/web/src/main/java/eu/eudat/controllers/UserGuideController.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetProfileManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/MetricsManager.java
 2021-10-08 16:04:52 +03:00
George Kalampokis 9919886c26 Fix issues with dataset sorting on Dashboard with Elasticsearch 2021-10-08 11:02:56 +03:00
George Kalampokis 77d50773b8 Merge branch 'improved_queries' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
 2021-10-07 11:05:19 +03:00
George Kalampokis 524cededb6 Fix issue when exporting to docx/pdf 2021-10-06 18:16:39 +03:00
George Kalampokis 407961e137 Fix critical issue with DMP queries without elastic 2021-10-06 14:21:54 +03:00
George Kalampokis 3ec942cfa7 Add support for Html text when exporting to docx (alpha) 2021-10-05 17:58:46 +03:00
George Kalampokis 54c862ecbb Minor metrics refactor 2021-10-05 13:09:02 +03:00
George Kalampokis b66bde871a Fix issue of new DMPs not showing on the user's listing with elasticsearch active (#7010) 2021-10-05 12:56:20 +03:00
George Kalampokis 91729bab6d Optimize queries 2021-09-30 18:02:53 +03:00
George Kalampokis defac6afcc Fix issue with date formats on RDA import 2021-09-28 14:17:03 +03:00
George Kalampokis 06364873ca Fix issue with unordered multiplicity fields 2021-09-27 18:11:55 +03:00
George Kalampokis 1ae2788453 Fix various issues with spring update 2021-09-14 17:43:02 +03:00
George Kalampokis 6f92409f1e Update Spring boot framework to version 2.5.2 2021-09-07 09:42:31 +03:00
George Kalampokis c964af25b5 Fix critical issue with public dataset query 2021-08-23 11:48:29 +03:00
George Kalampokis 5de811a76d Vastly improve and optimize DMP and Dataset Queries (and with elastic) 2021-08-04 18:38:49 +03:00
George Kalampokis 4e87bd270e Improve error handling when user has no zenodo access token 2021-08-02 18:31:10 +03:00
George Kalampokis 6a2099c2b9 Add user role check up when it's getting dataset profiles for the manager listing 2021-07-26 10:28:58 +03:00
George Kalampokis 9da0f4e776 Allow to re insert users on Dataset profile 2021-07-23 18:27:49 +03:00
George Kalampokis c91059c854 Get latest available dataset profile instead of the version that is selected on the DMP 2021-07-20 12:55:52 +03:00
George Kalampokis 016acaaa0f When counting organizations for the user count only the active ones 2021-07-19 18:34:29 +03:00
George Kalampokis 4b3468d513 Fix issue when validating dataset for finalization (needs rework) 2021-07-19 18:31:16 +03:00
George Kalampokis d603fed61f When new version is made keep all it's contributors 2021-07-06 16:56:37 +03:00
George Kalampokis 1c22ed2321 Add extraProperties for xml export/import and restore pdf export for zenodo deposit 2021-07-06 16:33:46 +03:00
George Kalampokis d5cd90814a Improve error handling 2021-07-06 13:33:58 +03:00
George Kalampokis efe177f0b1 Fix issues with xml import and issues with zenodo deposit 2021-07-06 12:58:38 +03:00
George Kalampokis c57e10a033 Fix issue with zenodo depositions 2021-07-06 10:29:14 +03:00
George Kalampokis 244bfa5c54 Fix various critical issues 2021-07-02 14:02:32 +03:00
George Kalampokis 4e3b98f1ff Improvements over MS Word Document export 2021-06-30 17:17:17 +03:00
George Kalampokis d1e3aae36d Fix critical issue with dataset's copy dropdown 2021-06-30 12:51:12 +03:00
George Kalampokis dcd7f24cac Fix listing issues and improve elastic query 2021-06-29 11:45:20 +03:00
George Kalampokis 03b7699973 Reduce severity 2021-06-25 19:29:51 +03:00
George Kalampokis d1df83f689 Add query db fallback for DMPs 2021-06-25 19:27:02 +03:00
George Kalampokis 42a22b4a65 Improve external researcher support 2021-06-17 18:48:18 +03:00
George Kalampokis e94944abb1 Merge remote-tracking branch 'origin/Development' into Development 2021-06-17 13:58:36 +03:00
George Kalampokis 78186fb96d If the invitation is accepted then send the user to the accepted DMP if the user click again the link from the email 2021-06-17 13:58:28 +03:00
Diamantis Tziotzios d3d6c4a6aa prometheus fix 2021-06-15 15:43:45 +03:00
George Kalampokis be311f238b Add visibility rules checkup on dataset finalize checkup 2021-06-01 12:30:01 +03:00
George Kalampokis b76a787972 Hide grants without any active dmp 2021-05-10 17:17:08 +03:00
George Kalampokis 1d5befaf6a Add new endpoint in order to validate datasets 2021-05-10 13:40:08 +03:00
Diamantis Tziotzios ae2168b2d7 bug fix regarding template import 2021-05-05 11:20:43 +03:00
George Kalampokis 8a7cfab3b8 Fix various issues 2021-04-30 13:10:11 +03:00
George Kalampokis df5281eeaa Allow to manually add reference 2021-04-29 11:28:46 +03:00
George Kalampokis 77bcb95ad7 Fix issues when cloning dataset templates 2021-04-27 10:38:20 +03:00
George Kalampokis e5264780c3 When finalize DMP properly finalize it's datasets first 2021-04-21 18:21:52 +03:00
Diamantis Tziotzios ede8bbf48e metrics update 2021-04-15 18:30:16 +03:00
George Kalampokis 961a4df270 Add total Users metric 2021-04-13 12:19:55 +03:00
George Kalampokis 48730e7937 Fix issue when accessing dataset profile users when there are no users. 2021-04-12 12:12:21 +03:00
George Kalampokis c27ff1d446 Add missing metrics counters and made the metrics init task scheduled (per Hour) (ref #294) 2021-04-12 12:00:07 +03:00
George Kalampokis 27bf69268e Fix issue when creating new dataset profile 2021-04-12 10:49:22 +03:00
George Kalampokis aca31dc9da Add prometheus integration (ref #294) 2021-04-09 19:05:04 +03:00
George Kalampokis c57820d6b1 Remove "External References" from docx generation 2021-04-08 16:48:14 +03:00
George Kalampokis 4156875bae Refactor and add logic for removing users from Dataset Templates 2021-04-07 19:08:57 +03:00
George Kalampokis bc3c8b44d2 Add option to add or remove users from Dataset Templates 2021-04-07 19:03:22 +03:00
George Kalampokis af04e34b6f Add new User Role Dataset Template Editor. 2021-04-06 19:03:00 +03:00
George Kalampokis c929eb3a2b When uploading to zenodo upload both pdf and the RDA json files 2021-04-05 14:03:14 +03:00
George Kalampokis fcd24fd907 Add community when depositing to zenodo (ARGOS). 2020-11-23 18:16:32 +02:00
George Kalampokis 66358acfcf Replace the openDMP Affiliation on Zenodo with either a configurable 
affiliation or the related organizations of the DMP
 2020-11-19 18:39:25 +02:00
George Kalampokis 1e0b828a48 Prevent to check deleted Datasets when checking which Dataset Templates are in use 2020-11-16 18:31:41 +02:00
George Kalampokis f5533e1b95 Prevent user to send merge request email to itself 2020-11-10 17:39:43 +02:00
George Kalampokis da9872576e Initial commit for the new Dataset Template Field (identifier validator) 2020-11-05 18:20:37 +02:00
George Kalampokis df8af6e6cd Trim time on Dataset's modified time in order to match with the Database 2020-10-30 11:29:43 +02:00
George Kalampokis 03da1f3f7b When merging users delete the remaining credentials of the user to be 
merged
 2020-10-29 12:08:09 +02:00
George Kalampokis c1d473f8d4 When merging users remove the email from the user to be merged 2020-10-29 11:54:15 +02:00
George Kalampokis ff169ae806 Made User Merge logic functional 2020-10-27 18:06:58 +02:00
George Kalampokis 981eb48d89 Add email for Merge requests 2020-10-27 12:06:32 +02:00
George Kalampokis 9674ec2b6b Add user merge related services and updates on existing services on the frontend 2020-10-26 10:36:20 +02:00
George Kalampokis e1212383ff Add expirimental logic for userMerge (+ some updates for DB) 2020-10-23 18:40:17 +03:00
George Kalampokis 56d6b12555 Add Organization and roleOrganization to the User Info. Also allow to 
edit the user's name from the updateSettings
 2020-10-23 11:48:27 +03:00
George Kalampokis a78044920a Fixed issues with elastic and last public version 2020-10-12 12:45:32 +03:00
George Kalampokis 78903bf930 Add the backend logic to export all users to .csv 2020-10-07 17:29:53 +03:00
George Kalampokis 7a3b4a18ca Fixed compile issues 2020-10-07 14:22:37 +03:00
Diamantis Tziotzios e65bce0f5a Merge branch 'ui-redesign' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcher.java
#	dmp-backend/web/src/main/java/eu/eudat/models/data/external/ResearchersExternalSourcesModel.java
#	dmp-backend/web/src/main/resources/externalUrls/ExternalUrls.xml
 2020-10-06 16:43:20 +03:00
George Kalampokis e2326e1070 Minor refactoring 2020-10-06 11:50:14 +03:00
apapachristou a1b067071a Backend: Fixes modified time check on save dmp without previous reload. Frontend: Adds dialog to proceed to dataset editor on "save & add dataset" 2020-10-06 11:21:15 +03:00
George Kalampokis 7b9ae7c91d Add support for Zenodo license autocomplete source 2020-10-01 16:08:32 +03:00
George Kalampokis b3be89fb88 Allow to invite others with just the email even if they don't have an 
user
 2020-09-29 12:41:47 +03:00
George Kalampokis 08271c88cb When getting just the email for invitation, find it's user and set it's 
id to the invited user
 2020-09-28 12:36:37 +03:00
George Kalampokis 36b380e738 Check if the grant can be edited only when the grant is internal 2020-09-16 18:37:24 +03:00
George Kalampokis 4cc44814e2 Minor improvements to error checkups 2020-09-14 18:09:57 +03:00
George Kalampokis 2390a33a98 When uploading dataset template xmls delete the working directory copy of the file 2020-09-11 16:31:57 +03:00
George Kalampokis b66fe982f5 Update Tags field with multiple autocomplete like in the dataset editor 2020-09-11 14:27:53 +03:00
George Kalampokis aac277020a Add support for zenodo source on autocomplete combobox 2020-09-10 18:06:37 +03:00
George Kalampokis f0502b94df Change the tags on the dmp editor to a multiple auto select, that allow to create tags or use existing ones 2020-09-09 17:49:45 +03:00
George Kalampokis 7300e2fe85 When creating a DMP with datasets, add datasets after the DMP is created 2020-09-08 17:50:38 +03:00
George Kalampokis a706a9c8f6 Improve the retrieval of the datasetpagedefinition from the dmp api 2020-09-08 16:42:35 +03:00
George Kalampokis db0cee542c When creating or updating a DMP with datasets, check the datasets template validity from the datasets of the request and not from the ones in DB 2020-09-08 10:53:10 +03:00
George Kalampokis d890763b41 Updated The DatasetWizardModel on the backend in order to be similar to it's front end counterpart 2020-09-04 17:00:34 +03:00
George Kalampokis 072a1c8a18 Change the filename of the exported DMP (also affects DOI generation) (ref #288) 2020-09-03 18:08:53 +03:00
George Kalampokis e4713d60bd When creating a new version of a DMP return the Id of the new DMP 2020-09-03 17:57:14 +03:00
George Kalampokis 8951b61b3b Return the id of the cloned dmp when calling the dmp/clone endpoint 2020-09-02 18:32:12 +03:00
George Kalampokis e1368e270a Update Zenodo's file API 2020-08-25 17:30:29 +03:00
George Kalampokis fa86258197 Fixed minor issue with Zenodo file names 2020-08-24 12:03:29 +03:00
George Kalampokis 4d249eeae4 Changed the file format when creating Zenodo Deposit 2020-08-24 10:49:50 +03:00
George Kalampokis 1c876cbcca RecentActivity can now be sorted by finalizedAt and publishedAt 2020-07-31 17:04:18 +03:00