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Merge branch 'ui-redesign' into Development 

# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcher.java
#	dmp-backend/web/src/main/java/eu/eudat/models/data/external/ResearchersExternalSourcesModel.java
#	dmp-backend/web/src/main/resources/externalUrls/ExternalUrls.xml
This commit is contained in:
Diamantis Tziotzios 2020-10-06 16:43:20 +03:00
parent f2613c4c87 9fd33e421b
commit e65bce0f5a
447 changed files with 90567 additions and 48762 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

66
Jenkinsfile vendored Normal file
View File

@ -0,0 +1,66 @@
def pipelineContext = [:]
pipeline {
agent any
options {
skipDefaultCheckout(true)
}
stages {
stage('Checkout') {
steps {
checkout scm
}
}
stage('Build API') {
steps {
script {
pipelineContext.apiImage = docker.build("open-dmp-api:${env.BUILD_ID}", "-f dmp-backend/Dockerfile.CI dmp-backend/")
}
}
}
stage('Build WebApp') {
steps {
script {
pipelineContext.webappImage = docker.build("open-dmp-webapp:${env.BUILD_ID}", "-f dmp-frontend/Dockerfile.CI dmp-frontend/")
}
}
}
//stage('SonarQube analysis') {
// steps {
// script {
// def scannerHome = tool 'SonarQube Scanner 4.3';
// withSonarQubeEnv('SonarQube') { // If you have configured more than one global server connection, you can specify its name
// sh "${scannerHome}/bin/sonar-scanner"
// }
// }
// }
//}
//// waiting for sonar results based into the configured web hook in Sonar server which push the status back to jenkins
//stage('SonarQube scan result check') {
// steps {
// timeout(time: 2, unit: 'MINUTES') {
// retry(3) {
// script {
// def qg = waitForQualityGate()
// if (qg.status != 'OK') {
// error "Pipeline aborted due to quality gate failure: ${qg.status}"
// }
// }
// }
// }
// }
//}
stage('Pushing to Docker Registry') {
steps {
script {
docker.withRegistry('http://drepo.local.cite.gr', 'b2c651c1-9a3b-4a98-a6da-e1dd7a20f512') {
pipelineContext.apiImage.push()
pipelineContext.webappImage.push()
}
}
}
}
}
}

15
dmp-backend/Dockerfile.CI Normal file
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@ -0,0 +1,15 @@
FROM maven:3-jdk-8-alpine AS MAVEN_BUILD
COPY pom.xml /build/
COPY data /build/data/
COPY elastic /build/elastic/
COPY queryable /build/queryable/
COPY web /build/web/
WORKDIR /build/
RUN mvn package
FROM openjdk:8-jre-alpine
WORKDIR /app
COPY --from=MAVEN_BUILD /build/web/target/web-1.0-SNAPSHOT.jar /app/app.jar
ENTRYPOINT ["java","-Djava.security.egd=file:/dev/./urandom" ,"-Dspring.profiles.active=${PROF}","-jar","/app.jar"]

5
dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/DMPDaoImpl.java
View File

@ -52,13 +52,12 @@ public class DMPDaoImpl extends DatabaseAccess<DMP> implements DMPDao {
query.where((builder, root) -> root.get("groupId").in(criteria.getGroupIds()));
if (criteria.getStatus() != null) {
if (criteria.getStatus() == DMP.DMPStatus.FINALISED.getValue()) {
query.where((builder, root) -> builder.and(builder.equal(root.get("status"), DMP.DMPStatus.FINALISED.getValue()), builder.notEqual(root.get("isPublic"), true)));
query.where((builder, root) -> builder.equal(root.get("status"), DMP.DMPStatus.FINALISED.getValue()));
} else if (criteria.getStatus() == DMP.DMPStatus.ACTIVE.getValue()) {
query.where((builder, root) -> builder.equal(root.get("status"), DMP.DMPStatus.ACTIVE.getValue()));
}
}
if (criteria.getIsPublic())
query.where(((builder, root) -> builder.equal(root.get("isPublic"), true)));
query.where(((builder, root) -> builder.equal(root.get("isPublic"), criteria.getIsPublic())));
/*if (criteria.getRole() != null) {
if (criteria.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())) {
query.where((builder, root) -> builder.equal(root.join("users", JoinType.LEFT).get("role"), UserDMP.UserDMPRoles.OWNER.getValue()));

16
dmp-backend/data/src/main/java/eu/eudat/data/entities/DMP.java
View File

@ -29,7 +29,21 @@ import java.util.stream.Collectors;
@NamedEntityGraph(
name = "dmpRecentActivity",
attributeNodes = {
@NamedAttributeNode("users"), @NamedAttributeNode("creator")})
@NamedAttributeNode("users"), @NamedAttributeNode("creator")}),
@NamedEntityGraph(
name = "recentDmpModel",
attributeNodes = {@NamedAttributeNode("organisations"), @NamedAttributeNode("researchers"), @NamedAttributeNode("associatedDmps"),
@NamedAttributeNode("grant"), @NamedAttributeNode(value = "users", subgraph = "users"), @NamedAttributeNode("creator"), @NamedAttributeNode("profile"), @NamedAttributeNode(value = "dataset", subgraph = "dataset")},
subgraphs = {
@NamedSubgraph(name = "users", attributeNodes = {@NamedAttributeNode("user")}),
@NamedSubgraph(name = "dataset", attributeNodes = {@NamedAttributeNode("id"), @NamedAttributeNode("label")})
}
),
@NamedEntityGraph(
name = "versionListingModel",
attributeNodes = {@NamedAttributeNode("id"), @NamedAttributeNode("groupId"), @NamedAttributeNode("version")}
)
})
public class DMP implements DataEntity<DMP, UUID> {

12
dmp-backend/data/src/main/java/eu/eudat/data/entities/Dataset.java
View File

@ -36,7 +36,17 @@ import java.util.stream.Collectors;
@NamedEntityGraph(
name = "datasetDataRepositories",
attributeNodes = {@NamedAttributeNode(value = "dmp", subgraph = "dmp"), @NamedAttributeNode("creator")},
subgraphs = @NamedSubgraph(name = "dmp", attributeNodes = {@NamedAttributeNode("creator"), @NamedAttributeNode("users")}))
subgraphs = @NamedSubgraph(name = "dmp", attributeNodes = {@NamedAttributeNode("creator"), @NamedAttributeNode("users")})),
@NamedEntityGraph(
name = "recentDatasetModel",
attributeNodes = {@NamedAttributeNode("services"), @NamedAttributeNode(value = "datasetDataRepositories", subgraph = "datasetDataRepositories"),
@NamedAttributeNode(value = "datasetExternalDatasets", subgraph = "datasetExternalDatasets"), @NamedAttributeNode("registries"),
@NamedAttributeNode(value = "dmp", subgraph = "dmp"), @NamedAttributeNode("profile"), @NamedAttributeNode("creator")},
subgraphs = {
@NamedSubgraph(name = "dmp", attributeNodes = {@NamedAttributeNode("creator"), @NamedAttributeNode("users"), @NamedAttributeNode("grant"), @NamedAttributeNode("organisations")}),
@NamedSubgraph(name = "datasetDataRepositories", attributeNodes = {@NamedAttributeNode("dataRepository")}),
@NamedSubgraph(name = "datasetExternalDatasets", attributeNodes = {@NamedAttributeNode("externalDataset")})
})
})
public class Dataset implements DataEntity<Dataset, UUID> {

7
dmp-backend/data/src/main/java/eu/eudat/data/query/PaginationService.java
View File

@ -21,9 +21,12 @@ public class PaginationService {
items.withFields(Arrays.asList(tableRequest.getSelection().getFields()));
return items;
}
public static <T extends DataEntity> void applyOrder(QueryableList<T> items, TableQuery tableRequest) {
ColumnOrderings columnOrderings = tableRequest.getOrderings();
applyOrder(items, tableRequest.getOrderings());
}
public static <T extends DataEntity> void applyOrder(QueryableList<T> items, ColumnOrderings columnOrderings) {
for (Ordering ordering : columnOrderings.getFieldOrderings()) {
if (ordering.getOrderByType() == Ordering.OrderByType.ASC)
applyAscOrder(items, ordering);

8
dmp-backend/elastic/src/main/java/eu/eudat/elastic/entities/Tag.java
View File

@ -13,6 +13,14 @@ public class Tag implements ElasticEntity {
private String id;
private String name;
public Tag() {
}
public Tag(String id, String name) {
this.id = id;
this.name = name;
}
public String getId() {
return id;
}

73
dmp-backend/web/src/main/java/eu/eudat/controllers/DMPs.java
View File

@ -28,6 +28,8 @@ import eu.eudat.models.data.helpers.common.DataTableData;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.listingmodels.DataManagementPlanListingModel;
import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import eu.eudat.models.data.listingmodels.VersionListingModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.query.DMPQuery;
import eu.eudat.types.ApiMessageCode;
@ -55,8 +57,7 @@ import java.util.List;
import java.util.Map;
import java.util.UUID;
import static org.springframework.http.MediaType.APPLICATION_ATOM_XML;
import static org.springframework.http.MediaType.APPLICATION_JSON;
import static org.springframework.http.MediaType.*;
@RestController
@ -158,14 +159,26 @@ public class DMPs extends BaseController {
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<Tuple<String, String>>>().status(ApiMessageCode.NO_MESSAGE).payload(dataTable));
}
@RequestMapping(method = RequestMethod.GET, value = {"/versions/{id}"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<VersionListingModel>>> getVersions(@PathVariable(value= "id") String groupId,
@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws Exception {
List<VersionListingModel> versions = this.dataManagementPlanManager.getAllVersions(groupId, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<VersionListingModel>>().status(ApiMessageCode.NO_MESSAGE).payload(versions));
}
/*
* Data Export
* */
@RequestMapping(method = RequestMethod.GET, value = {"rda/{id}"})
public @ResponseBody
ResponseEntity getRDAJsonDocument(@PathVariable String id, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IOException {
ResponseEntity getRDAJsonDocument(@PathVariable String id, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) {
try {
return this.dataManagementPlanManager.getRDAJsonDocument(id, datasetManager, principal);
} catch (Exception e) {
return ResponseEntity.status(HttpStatus.EXPECTATION_FAILED).body(new ResponseItem<>().message(e.getMessage()).status(ApiMessageCode.ERROR_MESSAGE));
}
}
@RequestMapping(method = RequestMethod.GET, value = {"/getPDF/{id}"})
@ -199,27 +212,35 @@ public class DMPs extends BaseController {
@Transactional
@RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<UUID>> createOrUpdate(@RequestBody eu.eudat.models.data.dmp.DataManagementPlanEditorModel dataManagementPlanEditorModel, Principal principal) throws Exception {
DMP dmp = this.dataManagementPlanManager.createOrUpdate(this.getApiContext(), dataManagementPlanEditorModel, principal);
ResponseEntity<ResponseItem<eu.eudat.models.data.dmp.DataManagementPlan>> createOrUpdate(@RequestBody eu.eudat.models.data.dmp.DataManagementPlanEditorModel dataManagementPlanEditorModel, Principal principal) throws Exception {
DMP dmp = this.dataManagementPlanManager.createOrUpdate(dataManagementPlanEditorModel, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<eu.eudat.models.data.dmp.DataManagementPlan>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Created").payload(new eu.eudat.models.data.dmp.DataManagementPlan().fromDataModel(dmp)));
}
@Transactional
@RequestMapping(method = RequestMethod.POST, path = "full", consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<UUID>> createOrUpdateWithDatasets(@RequestBody eu.eudat.models.data.dmp.DataManagementPlanEditorModel dataManagementPlanEditorModel, Principal principal) throws Exception {
DMP dmp = this.dataManagementPlanManager.createOrUpdateWithDatasets(dataManagementPlanEditorModel, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<UUID>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Created").payload(dmp.getId()));
}
@RequestMapping(method = RequestMethod.POST, value = {"/new/{id}"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<DMP>> newVersion(@PathVariable UUID id, @Valid @RequestBody eu.eudat.models.data.dmp.DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
ResponseEntity<ResponseItem<UUID>> newVersion(@PathVariable UUID id, @Valid @RequestBody eu.eudat.models.data.dmp.DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
try {
this.dataManagementPlanManager.newVersion(id, dataManagementPlan, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DMP>().status(ApiMessageCode.NO_MESSAGE));
UUID result = this.dataManagementPlanManager.newVersion(id, dataManagementPlan, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<UUID>().status(ApiMessageCode.NO_MESSAGE).payload(result));
} catch (DMPNewVersionException exception) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message(exception.getMessage()));
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<UUID>().status(ApiMessageCode.ERROR_MESSAGE).message(exception.getMessage()));
}
}
@RequestMapping(method = RequestMethod.POST, value = {"/clone/{id}"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<DMP>> clone(@PathVariable UUID id, @RequestBody eu.eudat.models.data.dmp.DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
this.dataManagementPlanManager.clone(dataManagementPlan, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DMP>().status(ApiMessageCode.SUCCESS_MESSAGE));
ResponseEntity<ResponseItem<UUID>> clone(@PathVariable UUID id, @RequestBody eu.eudat.models.data.dmp.DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
UUID cloneId = this.dataManagementPlanManager.clone(dataManagementPlan, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<UUID>().status(ApiMessageCode.SUCCESS_MESSAGE).payload(cloneId));
}
@Transactional
@ -238,8 +259,10 @@ public class DMPs extends BaseController {
public ResponseEntity<ResponseItem> dmpUpload(@RequestParam("file") MultipartFile[] files, @RequestParam(name = "profiles", required = false)String[] profiles, Principal principal) throws Exception {
if (files[0].getContentType().equals(APPLICATION_JSON.toString())) {
this.dataManagementPlanManager.createFromRDA(files, principal, profiles);
} else if (files[0].getContentType().equals(APPLICATION_ATOM_XML.toString())) {
} else if (files[0].getContentType().equals(APPLICATION_ATOM_XML.toString()) || files[0].getContentType().equals(TEXT_XML.toString())) {
this.dataManagementPlanManager.createDmpFromXml(this.getApiContext(), files, principal);
} else {
return ResponseEntity.badRequest().body(new ResponseItem().status(ApiMessageCode.ERROR_MESSAGE).message("File format is not supported"));
}
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List>()
.status(ApiMessageCode.SUCCESS_MESSAGE));
@ -251,7 +274,8 @@ public class DMPs extends BaseController {
this.dataManagementPlanManager.makePublic(UUID.fromString(id), principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DMP>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Successfully Data Datamanagement Plan made public."));
} catch (Exception e) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message(e.getMessage()));
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message("Failed to make Data Management Plan public."));
}
}
@ -262,7 +286,8 @@ public class DMPs extends BaseController {
this.dataManagementPlanManager.makeFinalize(UUID.fromString(id), principal, datasetsToBeFinalized);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DMP>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Successfully Data Datamanagement Plan made finalized."));
} catch (Exception e) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message(e.getMessage()));
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message("Failed to finalize Data Management Plan."));
}
}
@ -273,7 +298,21 @@ public class DMPs extends BaseController {
this.dataManagementPlanManager.undoFinalize(UUID.fromString(id), principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DMP>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Successfully Data Datamanagement Plan made active."));
} catch (Exception e) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message(e.getMessage()));
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message("Failed to unfinalize the Data Management Plan."));
}
}
@Transactional
@RequestMapping(method = RequestMethod.POST, value = {"/updateusers/{id}"})
public ResponseEntity<ResponseItem<DMP>> updateUsers(@PathVariable String id, @RequestBody List<UserInfoListingModel> users, Principal principal) {
try {
this.dataManagementPlanManager.updateUsers(UUID.fromString(id), users, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DMP>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Successfully Updated Colaborators for Data Datamanagement Plan."));
} catch (Exception e) {
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DMP>().status(ApiMessageCode.ERROR_MESSAGE).message("Failed to update the users of Data Management Plan."));
}
}
@ -289,7 +328,7 @@ public class DMPs extends BaseController {
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<String>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Successfully created DOI for Data Datamanagement Plan in question.").payload(zenodoDOI));
} catch (Exception e) {
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<String>().status(ApiMessageCode.ERROR_MESSAGE).message(e.getMessage()));
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<String>().status(ApiMessageCode.ERROR_MESSAGE).message("Failed to create DOI for the Data Management Plan."));
}
}

12
dmp-backend/web/src/main/java/eu/eudat/controllers/DashBoardController.java
View File

@ -1,9 +1,12 @@
package eu.eudat.controllers;
import eu.eudat.criteria.RecentActivityCriteria;
import eu.eudat.logic.managers.DashBoardManager;
import eu.eudat.logic.security.claims.ClaimedAuthorities;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.models.data.dashboard.recent.RecentActivity;
import eu.eudat.models.data.dashboard.recent.model.RecentActivityModel;
import eu.eudat.models.data.dashboard.recent.tablerequest.RecentActivityTableRequest;
import eu.eudat.models.data.dashboard.searchbar.SearchBarItem;
import eu.eudat.models.data.dashboard.statistics.DashBoardStatistics;
import eu.eudat.models.data.helpers.responses.ResponseItem;
@ -15,6 +18,7 @@ import org.springframework.http.HttpStatus;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
import javax.transaction.Transactional;
import java.io.IOException;
import java.util.List;
@ -42,6 +46,14 @@ public class DashBoardController extends BaseController {
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DashBoardStatistics>().status(ApiMessageCode.NO_MESSAGE).payload(statistics));
}
@RequestMapping(method = RequestMethod.POST, value = {"/dashboard/recentActivity"}, produces = "application/json")
@Transactional
public ResponseEntity<ResponseItem<List<RecentActivityModel>>> getNewRecentActivity(@RequestBody RecentActivityTableRequest tableRequest,
@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) {
List<RecentActivityModel> statistics = dashBoardManager.getNewRecentActivity(tableRequest, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<RecentActivityModel>>().status(ApiMessageCode.NO_MESSAGE).payload(statistics));
}
@RequestMapping(method = RequestMethod.GET, value = {"/user/recentActivity"}, produces = "application/json")
public ResponseEntity<ResponseItem<RecentActivity>> getRecentActivity(@RequestParam(name = "numOfActivities", required = false, defaultValue = "5") Integer numberOfActivities, Principal principal) {
RecentActivity statistics = dashBoardManager.getRecentActivity(principal, numberOfActivities);

224
dmp-backend/web/src/main/java/eu/eudat/controllers/DatasetWizardController.java
View File

@ -1,224 +0,0 @@
package eu.eudat.controllers;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.query.items.item.dataset.DatasetWizardAutocompleteRequest;
import eu.eudat.data.query.items.item.datasetprofile.DatasetProfileWizardAutocompleteRequest;
import eu.eudat.exceptions.datasetwizard.DatasetWizardCannotUnlockException;
import eu.eudat.exceptions.security.UnauthorisedException;
import eu.eudat.logic.managers.DatasetManager;
import eu.eudat.logic.managers.DatasetWizardManager;
import eu.eudat.logic.managers.UserManager;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.security.claims.ClaimedAuthorities;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.forms.VisibilityRuleService;
import eu.eudat.logic.utilities.documents.helpers.FileEnvelope;
import eu.eudat.models.data.datasetwizard.DataManagentPlanListingModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.dmp.AssociatedProfile;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.models.data.user.composite.PagedDatasetProfile;
import eu.eudat.types.ApiMessageCode;
import eu.eudat.types.Authorities;
import org.apache.poi.util.IOUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.env.Environment;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
import org.springframework.web.bind.annotation.*;
import org.springframework.web.multipart.MultipartFile;
import javax.persistence.NoResultException;
import javax.transaction.Transactional;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Files;
import java.util.List;
import java.util.UUID;
import static eu.eudat.types.Authorities.ANONYMOUS;
@RestController
@CrossOrigin
@RequestMapping(value = {"api/datasetwizard"})
public class DatasetWizardController extends BaseController {
private static final Logger logger = LoggerFactory.getLogger(DatasetWizardController.class);
private Environment environment;
private DatasetManager datasetManager;
private UserManager userManager;
private ConfigLoader configLoader;
@Autowired
public DatasetWizardController(ApiContext apiContext, Environment environment, DatasetManager datasetManager, UserManager userManager, ConfigLoader configLoader) {
super(apiContext);
this.environment = environment;
this.datasetManager = datasetManager;
this.userManager = userManager;
this.configLoader = configLoader;
}
@RequestMapping(method = RequestMethod.POST, value = {"/userDmps"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<DataManagentPlanListingModel>>> getUserDmps(@RequestBody DatasetWizardAutocompleteRequest datasetWizardAutocompleteRequest, Principal principal) throws IllegalAccessException, InstantiationException {
List<DataManagentPlanListingModel> dataManagementPlans = DatasetWizardManager.getUserDmps(this.getApiContext().getOperationsContext().getDatabaseRepository().getDmpDao(), datasetWizardAutocompleteRequest, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<DataManagentPlanListingModel>>().status(ApiMessageCode.NO_MESSAGE).payload(dataManagementPlans));
}
@RequestMapping(method = RequestMethod.POST, value = {"/getAvailableProfiles"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<AssociatedProfile>>> getAvailableProfiles(@RequestBody DatasetProfileWizardAutocompleteRequest datasetProfileWizardAutocompleteRequest, @ClaimedAuthorities(claims = {ANONYMOUS}) Principal principal) throws IllegalAccessException, InstantiationException {
List<AssociatedProfile> dataManagementPlans = DatasetWizardManager.getAvailableProfiles(this.getApiContext().getOperationsContext().getDatabaseRepository().getDmpDao(), datasetProfileWizardAutocompleteRequest);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<AssociatedProfile>>().status(ApiMessageCode.NO_MESSAGE).payload(dataManagementPlans));
}
@Transactional
@RequestMapping(method = RequestMethod.GET, value = {"{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity getSingle(@PathVariable String id, @RequestHeader("Content-Type") String contentType, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException {
try {
if (contentType.equals("application/xml")) {
VisibilityRuleService visibilityRuleService = this.getApiContext().getUtilitiesService().getVisibilityRuleService();
return this.datasetManager.getDocument(id, visibilityRuleService, contentType, principal);
} else if (contentType.equals("application/msword")) {
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, this.getApiContext().getUtilitiesService().getVisibilityRuleService(), principal);
InputStream resource = new FileInputStream(file.getFile());
HttpHeaders responseHeaders = new HttpHeaders();
responseHeaders.setContentLength(file.getFile().length());
responseHeaders.setContentType(MediaType.APPLICATION_OCTET_STREAM);
responseHeaders.set("Content-Disposition", "attachment;filename=" + file.getFilename());
responseHeaders.set("Access-Control-Expose-Headers", "Content-Disposition");
responseHeaders.get("Access-Control-Expose-Headers").add("Content-Type");
byte[] content = IOUtils.toByteArray(resource);
resource.close();
Files.deleteIfExists(file.getFile().toPath());
return new ResponseEntity<>(content,
responseHeaders,
HttpStatus.OK);
} else {
DatasetWizardModel dataset = this.datasetManager.getSingle(id, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
}
} catch (Exception e) {
if (e instanceof UnauthorisedException) {
if (e instanceof UnauthorisedException) {
return ResponseEntity.status(HttpStatus.FORBIDDEN).body(new ResponseItem<DataManagementPlanOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
} else if (e instanceof NoResultException) {
return ResponseEntity.status(HttpStatus.NOT_FOUND).body(new ResponseItem<DataManagementPlanOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
} else {
throw e;
}
}
}
return null; // ????
}
@RequestMapping(method = RequestMethod.GET, value = {"/public/{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity getSinglePublic(@PathVariable String id) throws Exception {
try {
DatasetWizardModel dataset = this.datasetManager.getSinglePublic(id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
}
catch (Exception ex) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).message(ex.getMessage()));
}
}
@Transactional
@RequestMapping(method = RequestMethod.DELETE, value = {"{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> delete(@PathVariable(value = "id") UUID id, Principal principal) throws Exception {
new DatasetWizardManager().delete(this.getApiContext(), id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Deleted"));
}
@Transactional
@RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> createOrUpdate(@RequestBody DatasetWizardModel profile, Principal principal) throws Exception {
this.datasetManager.createOrUpdate(profile, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<eu.eudat.data.entities.Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Created").payload(null));
}
@RequestMapping(method = RequestMethod.GET, value = {"/getPDF/{id}"})
public @ResponseBody
ResponseEntity<byte[]> getPDFDocument(@PathVariable String id, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException, InterruptedException {
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, this.getApiContext().getUtilitiesService().getVisibilityRuleService(), principal);
String fileName = file.getFilename();
if (fileName.endsWith(".docx")){
fileName = fileName.substring(0, fileName.length() - 5);
}
File pdffile = datasetManager.convertToPDF(file, environment);
InputStream resource = new FileInputStream(pdffile);
HttpHeaders responseHeaders = new HttpHeaders();
responseHeaders.setContentLength(pdffile.length());
responseHeaders.setContentType(MediaType.APPLICATION_OCTET_STREAM);
responseHeaders.set("Content-Disposition", "attachment;filename=" + fileName + ".pdf");
responseHeaders.set("Access-Control-Expose-Headers", "Content-Disposition");
responseHeaders.get("Access-Control-Expose-Headers").add("Content-Type");
byte[] content = IOUtils.toByteArray(resource);
resource.close();
Files.deleteIfExists(file.getFile().toPath());
Files.deleteIfExists(pdffile.toPath());
return new ResponseEntity<>(content,
responseHeaders,
HttpStatus.OK);
}
@RequestMapping(method = RequestMethod.GET, value = {"/get/{id}"}, produces = "application/json")
public ResponseEntity<ResponseItem<PagedDatasetProfile>> getSingle(@PathVariable String id) {
eu.eudat.data.entities.DatasetProfile profile = this.getApiContext().getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(UUID.fromString(id));
eu.eudat.models.data.user.composite.DatasetProfile datasetprofile = userManager.generateDatasetProfileModel(profile);
PagedDatasetProfile pagedDatasetProfile = new PagedDatasetProfile();
pagedDatasetProfile.buildPagedDatasetProfile(datasetprofile);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<PagedDatasetProfile>().status(ApiMessageCode.NO_MESSAGE).payload(pagedDatasetProfile));
}
@Transactional
@RequestMapping(method = RequestMethod.GET, value = {"/{id}/unlock"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> unlock(@PathVariable(value = "id") UUID id, Principal principal) throws Exception {
try {
new DatasetWizardManager().unlock(this.getApiContext(), id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Unlocked"));
} catch (DatasetWizardCannotUnlockException datasetWizardCannotUnlockException) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<Dataset>().status(ApiMessageCode.ERROR_MESSAGE).message(datasetWizardCannotUnlockException.getMessage()));
}
}
@RequestMapping(method = RequestMethod.POST, value = {"/upload"})
public ResponseEntity<ResponseItem> datasetXmlImport(@RequestParam("file") MultipartFile file, @RequestParam("dmpId") String dmpId, @RequestParam("datasetProfileId") String datasetProfileId, Principal principal) {
try {
Dataset dataset = this.datasetManager.createDatasetFromXml(file, dmpId, datasetProfileId, principal);
if (dataset != null){
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem().status(ApiMessageCode.SUCCESS_MESSAGE));
}
else {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE).message("Import was unsuccessful."));
}
} catch (Exception e) {
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE).message("Import was unsuccessful."));
}
}
@RequestMapping(method = RequestMethod.GET, value = {"profile/{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity getSingleProfileUpdate(@PathVariable String id, @ClaimedAuthorities(claims = {ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException {
DatasetWizardModel dataset = this.datasetManager.datasetUpdateProfile(id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
}
}

251
dmp-backend/web/src/main/java/eu/eudat/controllers/Datasets.java
View File

@ -1,42 +1,84 @@
package eu.eudat.controllers;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.query.items.item.dataset.DatasetWizardAutocompleteRequest;
import eu.eudat.data.query.items.item.datasetprofile.DatasetProfileWizardAutocompleteRequest;
import eu.eudat.data.query.items.table.dataset.DatasetPublicTableRequest;
import eu.eudat.data.query.items.table.dataset.DatasetTableRequest;
import eu.eudat.data.query.items.table.datasetprofile.DatasetProfileTableRequestItem;
import eu.eudat.exceptions.datasetwizard.DatasetWizardCannotUnlockException;
import eu.eudat.exceptions.security.UnauthorisedException;
import eu.eudat.logic.managers.DatasetManager;
import eu.eudat.logic.managers.DatasetWizardManager;
import eu.eudat.logic.managers.UserManager;
import eu.eudat.logic.proxy.config.configloaders.ConfigLoader;
import eu.eudat.logic.security.claims.ClaimedAuthorities;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.forms.VisibilityRuleService;
import eu.eudat.logic.utilities.documents.helpers.FileEnvelope;
import eu.eudat.models.data.dataset.DatasetOverviewModel;
import eu.eudat.models.data.datasetprofile.DatasetProfileListingModel;
import eu.eudat.models.data.datasetwizard.DataManagentPlanListingModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.dmp.AssociatedProfile;
import eu.eudat.models.data.helpers.common.DataTableData;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
import eu.eudat.models.data.listingmodels.DatasetListingModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.models.data.user.composite.PagedDatasetProfile;
import eu.eudat.types.ApiMessageCode;
import eu.eudat.types.Authorities;
import org.apache.poi.util.IOUtils;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.env.Environment;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpStatus;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.web.bind.annotation.*;
import org.springframework.web.multipart.MultipartFile;
import javax.persistence.NoResultException;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import java.nio.file.Files;
import java.util.List;
import java.util.Locale;
import java.util.UUID;
import static eu.eudat.types.Authorities.ANONYMOUS;
@RestController
@CrossOrigin
@RequestMapping(value = {"/api/datasets/"})
public class Datasets extends BaseController {
private static final Logger logger = LoggerFactory.getLogger(Datasets.class);
private Environment environment;
private DatasetManager datasetManager;
private ConfigLoader configLoader;
private UserManager userManager;
@Autowired
public Datasets(ApiContext apiContext, DatasetManager datasetManager) {
public Datasets(ApiContext apiContext, Environment environment, DatasetManager datasetManager, ConfigLoader configLoader, UserManager userManager) {
super(apiContext);
this.environment = environment;
this.datasetManager = datasetManager;
this.configLoader = configLoader;
this.userManager = userManager;
}
/*
* Data Retrieval
* */
@RequestMapping(method = RequestMethod.POST, value = {"paged"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<DataTableData<DatasetListingModel>>> getPaged(@RequestBody DatasetTableRequest datasetTableRequest, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws Exception {
@ -52,12 +94,70 @@ public class Datasets extends BaseController {
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DataTableData<DatasetListingModel>>().status(ApiMessageCode.NO_MESSAGE).payload(dataTable));
}
@Transactional
@RequestMapping(method = RequestMethod.GET, value = {"/makepublic/{id}"}, produces = "application/json")
@RequestMapping(method = RequestMethod.GET, value = {"/overview/{id}"})
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> makePublic(@PathVariable UUID id, Principal principal, Locale locale) throws Exception {
this.datasetManager.makePublic(this.getApiContext().getOperationsContext().getDatabaseRepository().getDatasetDao(), id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message(this.getApiContext().getHelpersService().getMessageSource().getMessage("dataset.public", new Object[]{}, locale)));
ResponseEntity getOverviewSingle(@PathVariable String id,@ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) {
try {
DatasetOverviewModel dataset = this.datasetManager.getOverviewSingle(id, principal, false);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetOverviewModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
} catch (Exception e) {
if (e instanceof UnauthorisedException) {
return ResponseEntity.status(HttpStatus.FORBIDDEN).body(new ResponseItem<DatasetOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
} else {
return ResponseEntity.status(HttpStatus.NOT_FOUND).body(new ResponseItem<DatasetOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
}
}
}
@RequestMapping(method = RequestMethod.GET, value = {"/publicOverview/{id}"})
public @ResponseBody
ResponseEntity getOverviewSinglePublic(@PathVariable String id, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws Exception {
// try {
DatasetOverviewModel dataset = this.datasetManager.getOverviewSingle(id, principal, true);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetOverviewModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
// } catch (Exception ex) {
// return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DataManagementPlanOverviewModel>().status(ApiMessageCode.NO_MESSAGE).message(ex.getMessage()));
// }
}
@javax.transaction.Transactional
@RequestMapping(method = RequestMethod.GET, value = {"{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity getSingle(@PathVariable String id, @RequestHeader("Content-Type") String contentType, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException {
try {
if (contentType.equals("application/xml")) {
VisibilityRuleService visibilityRuleService = this.getApiContext().getUtilitiesService().getVisibilityRuleService();
return this.datasetManager.getDocument(id, visibilityRuleService, contentType, principal);
} else if (contentType.equals("application/msword")) {
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, this.getApiContext().getUtilitiesService().getVisibilityRuleService(), principal);
InputStream resource = new FileInputStream(file.getFile());
HttpHeaders responseHeaders = new HttpHeaders();
responseHeaders.setContentLength(file.getFile().length());
responseHeaders.setContentType(MediaType.APPLICATION_OCTET_STREAM);
responseHeaders.set("Content-Disposition", "attachment;filename=" + file.getFilename());
responseHeaders.set("Access-Control-Expose-Headers", "Content-Disposition");
responseHeaders.get("Access-Control-Expose-Headers").add("Content-Type");
byte[] content = IOUtils.toByteArray(resource);
resource.close();
Files.deleteIfExists(file.getFile().toPath());
return new ResponseEntity<>(content,
responseHeaders,
HttpStatus.OK);
} else {
DatasetWizardModel dataset = this.datasetManager.getSingle(id, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
}
} catch (Exception e) {
logger.error(e.getMessage(), e);
if (e instanceof UnauthorisedException) {
return ResponseEntity.status(HttpStatus.FORBIDDEN).body(new ResponseItem<DataManagementPlanOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
} else if (e instanceof NoResultException) {
return ResponseEntity.status(HttpStatus.NOT_FOUND).body(new ResponseItem<DataManagementPlanOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
} else {
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body(new ResponseItem<DataManagementPlanOverviewModel>().status(ApiMessageCode.ERROR_MESSAGE));
}
}
}
@RequestMapping(method = RequestMethod.POST, value = {"/datasetProfilesUsedByDatasets/paged"}, produces = "application/json")
@ -67,6 +167,143 @@ public class Datasets extends BaseController {
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DataTableData<DatasetProfileListingModel>>().status(ApiMessageCode.NO_MESSAGE).payload(datasetProfileTableData));
}
@RequestMapping(method = RequestMethod.POST, value = {"/userDmps"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<DataManagentPlanListingModel>>> getUserDmps(@RequestBody DatasetWizardAutocompleteRequest datasetWizardAutocompleteRequest, Principal principal) throws IllegalAccessException, InstantiationException {
List<DataManagentPlanListingModel> dataManagementPlans = DatasetWizardManager.getUserDmps(this.getApiContext().getOperationsContext().getDatabaseRepository().getDmpDao(), datasetWizardAutocompleteRequest, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<DataManagentPlanListingModel>>().status(ApiMessageCode.NO_MESSAGE).payload(dataManagementPlans));
}
@RequestMapping(method = RequestMethod.POST, value = {"/getAvailableProfiles"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<List<AssociatedProfile>>> getAvailableProfiles(@RequestBody DatasetProfileWizardAutocompleteRequest datasetProfileWizardAutocompleteRequest, @ClaimedAuthorities(claims = {ANONYMOUS}) Principal principal) throws IllegalAccessException, InstantiationException {
List<AssociatedProfile> dataManagementPlans = DatasetWizardManager.getAvailableProfiles(this.getApiContext().getOperationsContext().getDatabaseRepository().getDmpDao(), datasetProfileWizardAutocompleteRequest);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<AssociatedProfile>>().status(ApiMessageCode.NO_MESSAGE).payload(dataManagementPlans));
}
@RequestMapping(method = RequestMethod.GET, value = {"/public/{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity getSinglePublic(@PathVariable String id) throws Exception {
try {
DatasetWizardModel dataset = this.datasetManager.getSinglePublic(id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
}
catch (Exception ex) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).message(ex.getMessage()));
}
}
@RequestMapping(method = RequestMethod.GET, value = {"/get/{id}"}, produces = "application/json")
public ResponseEntity<ResponseItem<PagedDatasetProfile>> getSingle(@PathVariable String id) {
eu.eudat.data.entities.DatasetProfile profile = this.getApiContext().getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(UUID.fromString(id));
eu.eudat.models.data.user.composite.DatasetProfile datasetprofile = userManager.generateDatasetProfileModel(profile);
PagedDatasetProfile pagedDatasetProfile = new PagedDatasetProfile();
pagedDatasetProfile.buildPagedDatasetProfile(datasetprofile);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<PagedDatasetProfile>().status(ApiMessageCode.NO_MESSAGE).payload(pagedDatasetProfile));
}
@RequestMapping(method = RequestMethod.GET, value = {"profile/{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity getSingleProfileUpdate(@PathVariable String id, @ClaimedAuthorities(claims = {ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException {
DatasetWizardModel dataset = this.datasetManager.datasetUpdateProfile(id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetWizardModel>().status(ApiMessageCode.NO_MESSAGE).payload(dataset));
}
/*
* Data Export
* */
@RequestMapping(method = RequestMethod.GET, value = {"/getPDF/{id}"})
public @ResponseBody
ResponseEntity<byte[]> getPDFDocument(@PathVariable String id, @ClaimedAuthorities(claims = {Authorities.ADMIN, Authorities.MANAGER, Authorities.USER, Authorities.ANONYMOUS}) Principal principal) throws IllegalAccessException, IOException, InstantiationException, InterruptedException {
FileEnvelope file = datasetManager.getWordDocumentFile(this.configLoader, id, this.getApiContext().getUtilitiesService().getVisibilityRuleService(), principal);
String fileName = file.getFilename();
if (fileName.endsWith(".docx")){
fileName = fileName.substring(0, fileName.length() - 5);
}
File pdffile = datasetManager.convertToPDF(file, environment);
InputStream resource = new FileInputStream(pdffile);
HttpHeaders responseHeaders = new HttpHeaders();
responseHeaders.setContentLength(pdffile.length());
responseHeaders.setContentType(MediaType.APPLICATION_OCTET_STREAM);
responseHeaders.set("Content-Disposition", "attachment;filename=" + fileName + ".pdf");
responseHeaders.set("Access-Control-Expose-Headers", "Content-Disposition");
responseHeaders.get("Access-Control-Expose-Headers").add("Content-Type");
byte[] content = IOUtils.toByteArray(resource);
resource.close();
Files.deleteIfExists(file.getFile().toPath());
Files.deleteIfExists(pdffile.toPath());
return new ResponseEntity<>(content,
responseHeaders,
HttpStatus.OK);
}
/*
* Data Management
* */
@javax.transaction.Transactional
@RequestMapping(method = RequestMethod.POST, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<UUID>> createOrUpdate(@RequestBody DatasetWizardModel profile, Principal principal) throws Exception {
Dataset dataset = this.datasetManager.createOrUpdate(profile, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<UUID>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Created").payload(dataset.getId()));
}
@Transactional
@RequestMapping(method = RequestMethod.GET, value = {"/makepublic/{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> makePublic(@PathVariable UUID id, Principal principal, Locale locale) throws Exception {
this.datasetManager.makePublic(this.getApiContext().getOperationsContext().getDatabaseRepository().getDatasetDao(), id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message(this.getApiContext().getHelpersService().getMessageSource().getMessage("dataset.public", new Object[]{}, locale)));
}
@javax.transaction.Transactional
@RequestMapping(method = RequestMethod.DELETE, value = {"/delete/{id}"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> delete(@PathVariable(value = "id") UUID id, Principal principal) throws Exception {
new DatasetWizardManager().delete(this.getApiContext(), id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Deleted"));
}
@javax.transaction.Transactional
@RequestMapping(method = RequestMethod.GET, value = {"/{id}/unlock"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Dataset>> unlock(@PathVariable(value = "id") UUID id, Principal principal) throws Exception {
try {
new DatasetWizardManager().unlock(this.getApiContext(), id);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Unlocked"));
} catch (DatasetWizardCannotUnlockException datasetWizardCannotUnlockException) {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem<Dataset>().status(ApiMessageCode.ERROR_MESSAGE).message(datasetWizardCannotUnlockException.getMessage()));
}
}
/*
* Data Import
* */
@RequestMapping(method = RequestMethod.POST, value = {"/upload"})
public ResponseEntity<ResponseItem> datasetXmlImport(@RequestParam("file") MultipartFile file, @RequestParam("dmpId") String dmpId, @RequestParam("datasetProfileId") String datasetProfileId, Principal principal) {
try {
Dataset dataset = this.datasetManager.createDatasetFromXml(file, dmpId, datasetProfileId, principal);
if (dataset != null){
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem().status(ApiMessageCode.SUCCESS_MESSAGE));
}
else {
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE).message("Import was unsuccessful."));
}
} catch (Exception e) {
logger.error(e.getMessage(), e);
return ResponseEntity.status(HttpStatus.BAD_REQUEST).body(new ResponseItem().status(ApiMessageCode.NO_MESSAGE).message("Import was unsuccessful."));
}
}
/*
* Data Index
* */
@javax.transaction.Transactional
@RequestMapping(method = RequestMethod.POST, value = {"/index"})
public @ResponseBody
@ -82,5 +319,7 @@ public class Datasets extends BaseController {
this.datasetManager.clearIndex(principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<eu.eudat.data.entities.Dataset>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Cleared").payload(null));
}
}

15
dmp-backend/web/src/main/java/eu/eudat/controllers/Login.java
View File

@ -31,6 +31,7 @@ import eu.eudat.logic.services.operations.authentication.AuthenticationService;
import eu.eudat.models.data.helpers.responses.ResponseItem;
import eu.eudat.models.data.login.Credentials;
import eu.eudat.models.data.login.LoginInfo;
import eu.eudat.models.data.principal.PrincipalModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.types.ApiMessageCode;
import org.slf4j.Logger;
@ -91,17 +92,17 @@ public class Login {
@Transactional
@RequestMapping(method = RequestMethod.POST, value = {"/externallogin"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Principal>> externallogin(@RequestBody LoginInfo credentials) throws GeneralSecurityException, NullEmailException {
ResponseEntity<ResponseItem<PrincipalModel>> externallogin(@RequestBody LoginInfo credentials) throws GeneralSecurityException, NullEmailException {
logger.info("Trying To Login With " + credentials.getProvider());
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Principal>().payload(customAuthenticationProvider.authenticate(credentials)).status(ApiMessageCode.SUCCESS_MESSAGE));
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<PrincipalModel>().payload(customAuthenticationProvider.authenticate(credentials)).status(ApiMessageCode.SUCCESS_MESSAGE));
}
@Transactional
@RequestMapping(method = RequestMethod.POST, value = {"/nativelogin"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Principal>> nativelogin(@RequestBody Credentials credentials) throws NullEmailException {
ResponseEntity<ResponseItem<PrincipalModel>> nativelogin(@RequestBody Credentials credentials) throws NullEmailException {
logger.info(credentials.getUsername() + " Trying To Login");
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Principal>().payload(userManager.authenticate(this.nonVerifiedUserAuthenticationService, credentials)).status(ApiMessageCode.SUCCESS_MESSAGE));
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<PrincipalModel>().payload(userManager.authenticate(this.nonVerifiedUserAuthenticationService, credentials)).status(ApiMessageCode.SUCCESS_MESSAGE));
}
@RequestMapping(method = RequestMethod.GET, value = {"/twitterRequestToken"}, produces = "application/json")
@ -148,9 +149,11 @@ public class Login {
@RequestMapping(method = RequestMethod.POST, value = {"/me"}, consumes = "application/json", produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<Principal>> authMe(Principal principal) throws NullEmailException {
ResponseEntity<ResponseItem<PrincipalModel>> authMe(Principal principal) throws NullEmailException {
logger.info(principal + " Getting Me");
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<Principal>().payload(this.nonVerifiedUserAuthenticationService.Touch(principal.getToken())).status(ApiMessageCode.NO_MESSAGE));
Principal principal1 = this.nonVerifiedUserAuthenticationService.Touch(principal.getToken());
PrincipalModel principalModel = PrincipalModel.fromEntity(principal1);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<PrincipalModel>().payload(principalModel).status(ApiMessageCode.NO_MESSAGE));
}
@Transactional

11
dmp-backend/web/src/main/java/eu/eudat/controllers/QuickWizardController.java
View File

@ -1,6 +1,8 @@
package eu.eudat.controllers;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.entities.DatasetProfile;
import eu.eudat.data.entities.Funder;
import eu.eudat.data.entities.Project;
import eu.eudat.logic.managers.DatasetManager;
@ -86,8 +88,8 @@ public class QuickWizardController extends BaseController {
quickWizard.getDmp().setId(dmpEntity.getId());
for (DatasetDescriptionQuickWizardModel dataset : quickWizard.getDatasets().getDatasetsList()) {
DataManagementPlan dmp = quickWizard.getDmp().toDataDmp(grantEntity, projectEntity, principal);
UUID uuid = quickWizard.getDmp().getDatasetProfile().getId();
DatasetWizardModel datasetWizardModel = dataset.toDataModel(dmp, uuid);
DatasetProfile profile = quickWizard.getDmp().getDatasetProfile();
DatasetWizardModel datasetWizardModel = dataset.toDataModel(dmp, profile);
this.datasetManager.createOrUpdate(datasetWizardModel, principal);
}
@ -98,7 +100,10 @@ public class QuickWizardController extends BaseController {
public @ResponseBody
ResponseEntity<ResponseItem<DatasetCreateWizardModel>> addDatasetWizard(@RequestBody DatasetCreateWizardModel datasetCreateWizardModel, Principal principal) throws Exception{
for(DatasetDescriptionQuickWizardModel dataset : datasetCreateWizardModel.getDatasets().getDatasetsList()){
this.datasetManager.createOrUpdate(dataset.toDataModel(datasetCreateWizardModel.getDmpMeta().getDmp(), datasetCreateWizardModel.getDmpMeta().getDatasetProfile().getId()), principal);
DatasetProfile profile = new DatasetProfile();
profile.setId(datasetCreateWizardModel.getDmpMeta().getDatasetProfile().getId());
profile.setLabel(datasetCreateWizardModel.getDmpMeta().getDatasetProfile().getLabel());
this.datasetManager.createOrUpdate(dataset.toDataModel(datasetCreateWizardModel.getDmpMeta().getDmp(), profile), principal);
}
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<DatasetCreateWizardModel>().status(ApiMessageCode.SUCCESS_MESSAGE).message("Dataset added!"));

8
dmp-backend/web/src/main/java/eu/eudat/controllers/TagController.java
View File

@ -48,8 +48,12 @@ public class TagController extends BaseController {
//ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria(query);
/*List<Map<String, String>> remoteRepos = this.getApiContext().getOperationsContext().getRemoteFetcher().getTags(externalUrlCriteria, type);
TagExternalSourcesModel researchersExternalSourcesModel = new TagExternalSourcesModel().fromExternalItem(remoteRepos);*/
List<Tag> tags = this.getApiContext().getOperationsContext().getElasticRepository().getDatasetRepository().query(new DatasetCriteria()).stream().map(Dataset::getTags).flatMap(Collection::stream).filter(StreamDistinctBy.distinctByKey(Tag::getId)).collect(Collectors.toList());
if (this.getApiContext().getOperationsContext().getElasticRepository().getDatasetRepository().exists()) {
List<Tag> tags = this.getApiContext().getOperationsContext().getElasticRepository().getDatasetRepository().query(new DatasetCriteria()).stream().map(Dataset::getTags).flatMap(Collection::stream).filter(StreamDistinctBy.distinctByKey(Tag::getId)).collect(Collectors.toList());
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<Tag>>().payload(tags).status(ApiMessageCode.NO_MESSAGE));
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<List<Tag>>().payload(tags).status(ApiMessageCode.NO_MESSAGE));
} else {
return ResponseEntity.status(HttpStatus.INTERNAL_SERVER_ERROR).body(new ResponseItem<List<Tag>>().status(ApiMessageCode.ERROR_MESSAGE).message("Elastic Services are not available"));
}
}
}

3
dmp-backend/web/src/main/java/eu/eudat/controllers/UserInvitationController.java
View File

@ -14,6 +14,7 @@ import org.springframework.http.ResponseEntity;
import org.springframework.transaction.annotation.Transactional;
import org.springframework.web.bind.annotation.*;
import javax.xml.bind.JAXBException;
import java.util.List;
import java.util.UUID;
@ -41,7 +42,7 @@ public class UserInvitationController extends BaseController {
@Transactional
@RequestMapping(method = RequestMethod.GET, value = {"/exchange/{invitationID}"}, produces = "application/json")
public @ResponseBody
ResponseEntity<ResponseItem<UUID>> exchange(@PathVariable UUID invitationID, Principal principal) {
ResponseEntity<ResponseItem<UUID>> exchange(@PathVariable UUID invitationID, Principal principal) throws JAXBException {
UUID dmpId = invitationsManager.assignUserAcceptedInvitation(invitationID, principal);
return ResponseEntity.status(HttpStatus.OK).body(new ResponseItem<UUID>().status(ApiMessageCode.SUCCESS_MESSAGE).payload(dmpId));
}

22
dmp-backend/web/src/main/java/eu/eudat/criteria/RecentActivityCriteria.java Normal file
View File

@ -0,0 +1,22 @@
package eu.eudat.criteria;
public class RecentActivityCriteria {
private String like;
private String order;
public String getLike() {
return like;
}
public void setLike(String like) {
this.like = like;
}
public String getOrder() {
return order;
}
public void setOrder(String order) {
this.order = order;
}
}

7
dmp-backend/web/src/main/java/eu/eudat/logic/builders/model/models/PrincipalBuilder.java
View File

@ -17,6 +17,7 @@ public class PrincipalBuilder extends Builder<Principal> {
private UUID id;
private UUID token;
private String name;
private String email;
private Date expiresAt;
private String avatarUrl;
private Set<Authorities> authorities;
@ -43,6 +44,11 @@ public class PrincipalBuilder extends Builder<Principal> {
return this;
}
public PrincipalBuilder email(String email) {
this.email = email;
return this;
}
public PrincipalBuilder expiresAt(Date expiresAt) {
this.expiresAt = expiresAt;
return this;
@ -98,6 +104,7 @@ public class PrincipalBuilder extends Builder<Principal> {
Principal principal = new Principal();
principal.setAuthorities(authorities);
principal.setName(name);
principal.setEmail(email);
principal.setExpiresAt(expiresAt);
principal.setToken(token);
principal.setId(id);

181
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DashBoardManager.java
View File

@ -1,38 +1,59 @@
package eu.eudat.logic.managers;
import eu.eudat.data.dao.criteria.*;
import eu.eudat.data.dao.criteria.DataManagementPlanCriteria;
import eu.eudat.data.dao.criteria.DatasetCriteria;
import eu.eudat.data.dao.criteria.GrantCriteria;
import eu.eudat.data.dao.criteria.OrganisationCriteria;
import eu.eudat.data.dao.entities.DMPDao;
import eu.eudat.data.dao.entities.DatasetDao;
import eu.eudat.data.dao.entities.OrganisationDao;
import eu.eudat.data.dao.entities.GrantDao;
import eu.eudat.data.entities.*;
import eu.eudat.data.query.items.table.dmp.DataManagmentPlanPublicTableRequest;
import eu.eudat.data.dao.entities.OrganisationDao;
import eu.eudat.data.entities.DMP;
import eu.eudat.data.entities.Dataset;
import eu.eudat.data.entities.Grant;
import eu.eudat.data.entities.UserInfo;
import eu.eudat.data.query.PaginationService;
import eu.eudat.elastic.entities.Dmp;
import eu.eudat.logic.builders.model.models.RecentActivityDataBuilder;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.services.operations.DatabaseRepository;
import eu.eudat.models.HintedModelFactory;
import eu.eudat.models.data.dashboard.recent.RecentActivity;
import eu.eudat.models.data.dashboard.recent.RecentActivityData;
import eu.eudat.models.data.dashboard.recent.model.RecentActivityModel;
import eu.eudat.models.data.dashboard.recent.model.RecentDatasetModel;
import eu.eudat.models.data.dashboard.recent.model.RecentDmpModel;
import eu.eudat.models.data.dashboard.recent.tablerequest.RecentActivityTableRequest;
import eu.eudat.models.data.dashboard.searchbar.SearchBarItem;
import eu.eudat.models.data.dashboard.statistics.DashBoardStatistics;
import eu.eudat.models.data.security.Principal;
import eu.eudat.queryable.QueryableList;
import eu.eudat.types.searchbar.SearchBarItemType;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import javax.transaction.Transactional;
import java.io.IOException;
import java.util.LinkedList;
import java.util.List;
import java.util.UUID;
import java.util.*;
import java.util.concurrent.CompletableFuture;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@Component
public class DashBoardManager {
private static final Logger logger = LoggerFactory.getLogger(DashBoardManager.class);
private final Map<String, Comparator<RecentActivityModel>> comparators = Stream.of(new Object[][] {
{ "modified", Comparator.comparing(o -> ((RecentActivityModel)o).getModified()).reversed()},
{ "created", Comparator.comparing(o -> ((RecentActivityModel)o).getCreated()).reversed()},
{ "label", Comparator.comparing(o -> ((RecentActivityModel)o).getTitle())},
{ "status", Comparator.comparing(o -> ((RecentActivityModel)o).getStatus()).reversed()},
{ "finalizedAt", Comparator.comparing(o -> ((RecentActivityModel)o).getFinalizedAt(), Comparator.nullsLast(Comparator.naturalOrder())).reversed()},
{ "publishedAt", Comparator.comparing(o -> ((RecentActivityModel)o).getPublishedAt(), Comparator.nullsLast(Comparator.naturalOrder())).reversed()}
}).collect(Collectors.toMap(data -> (String) data[0], data -> (Comparator<RecentActivityModel>)data[1]));
private ApiContext apiContext;
private DatabaseRepository databaseRepository;
@ -45,17 +66,12 @@ public class DashBoardManager {
public DashBoardStatistics getStatistics() {
DashBoardStatistics statistics = new DashBoardStatistics();
DataManagmentPlanPublicTableRequest publicTableRequest = new DataManagmentPlanPublicTableRequest();
DataManagementPlanPublicCriteria publicCriteria = new DataManagementPlanPublicCriteria();
DataManagementPlanCriteria publicCriteria = new DataManagementPlanCriteria();
publicCriteria.setIsPublic(true);
publicCriteria.setOnlyPublic(true);
publicCriteria.setAllVersions(false);
publicTableRequest.setCriteria(publicCriteria);
publicTableRequest.setQuery(databaseRepository.getDmpDao().asQueryable());
List<DMP> dmps = publicTableRequest.applyCriteria().toList();
List<DMP> dmps = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(publicCriteria).toList();
// DataManagementPlanCriteria dataManagementPlanCriteria = new DataManagementPlanCriteria();
OrganisationCriteria organisationCriteria = new OrganisationCriteria();
@ -121,10 +137,10 @@ public class DashBoardManager {
List<Integer> roles = new LinkedList<>();
List<Dmp> finalDmps = dmps;
CompletableFuture dmpFuture = dataManagementPlanRepository.getAuthenticated(dmps != null ? dataManagementPlanRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDmps.stream().map(Dmp::getId).collect(Collectors.toList()))) : dataManagementPlanRepository.getWithCriteria(dataManagementPlanCriteria), principal.getId(), roles).countAsync()
CompletableFuture dmpFuture = dataManagementPlanRepository.getAuthenticated((dmps != null && !dmps.isEmpty()) ? dataManagementPlanRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDmps.stream().map(Dmp::getId).collect(Collectors.toList()))) : dataManagementPlanRepository.getWithCriteria(dataManagementPlanCriteria), principal.getId(), roles).distinct().countAsync()
.whenComplete((dmpsStats, throwable) -> statistics.setTotalDataManagementPlanCount(dmpsStats));
List<eu.eudat.elastic.entities.Dataset> finalDatasets = datasets;
CompletableFuture datasetFuture = datasetRepository.getAuthenticated(datasets != null ? datasetRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDatasets.stream().map(x -> UUID.fromString(x.getId())).collect(Collectors.toList()))) : datasetRepository.getWithCriteria(datasetCriteria), user, roles).countAsync()
CompletableFuture datasetFuture = datasetRepository.getAuthenticated((datasets != null && !datasets.isEmpty()) ? datasetRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDatasets.stream().map(x -> UUID.fromString(x.getId())).collect(Collectors.toList()))) : datasetRepository.getWithCriteria(datasetCriteria), user, roles).countAsync()
.whenComplete((datasetsStats, throwable) -> statistics.setTotalDataSetCount(datasetsStats));
CompletableFuture grantFuture = grantRepository.getAuthenticated(grantRepository.getWithCriteria(grantCriteria), user).countAsync()
.whenComplete((grantsStats, throwable) -> statistics.setTotalGrantCount(grantsStats));
@ -175,6 +191,135 @@ public class DashBoardManager {
return activity;
}
@Transactional
public List<RecentActivityModel> getNewRecentActivity(RecentActivityTableRequest tableRequest, Principal principal) {
boolean isAuthenticated = principal.getId() != null;
List<RecentActivityModel> recentActivityModels = new ArrayList<>();
DMPDao dataManagementPlanRepository = databaseRepository.getDmpDao();
DatasetDao datasetRepository = databaseRepository.getDatasetDao();
UserInfo user = new UserInfo();
if (isAuthenticated) {
user.setId(principal.getId());
}
DatasetCriteria datasetCriteria = new DatasetCriteria();
datasetCriteria.setLike(tableRequest.getCriteria().getLike());
datasetCriteria.setAllVersions(false);
datasetCriteria.setIsPublic(!isAuthenticated);
DataManagementPlanCriteria dataManagementPlanCriteria = new DataManagementPlanCriteria();
dataManagementPlanCriteria.setAllVersions(false);
dataManagementPlanCriteria.setLike(tableRequest.getCriteria().getLike());
dataManagementPlanCriteria.setIsPublic(!isAuthenticated);
dataManagementPlanCriteria.setOnlyPublic(!isAuthenticated);
QueryableList<DMP> dmpList;
QueryableList<Dataset> datasetList;
List<eu.eudat.elastic.entities.Dataset> datasets = null;
List<eu.eudat.elastic.entities.Dmp> dmps = null;
if (apiContext.getOperationsContext().getElasticRepository().getDatasetRepository() != null) {
try {
eu.eudat.elastic.criteria.DatasetCriteria datasetElasticCriteria = new eu.eudat.elastic.criteria.DatasetCriteria();
datasetElasticCriteria.setLike(tableRequest.getCriteria().getLike());
datasetElasticCriteria.setAllowAllVersions(false);
datasetElasticCriteria.setPublic(!isAuthenticated);
datasets = apiContext.getOperationsContext().getElasticRepository().getDatasetRepository().query(datasetElasticCriteria);
}catch (Exception e) {
logger.warn(e.getMessage(), e);
datasets = null;
}
}
if (apiContext.getOperationsContext().getElasticRepository().getDmpRepository() != null) {
try {
eu.eudat.elastic.criteria.DmpCriteria dmpElasticCriteria = new eu.eudat.elastic.criteria.DmpCriteria();
dmpElasticCriteria.setLike(tableRequest.getCriteria().getLike());
dmpElasticCriteria.setAllowAllVersions(false);
dmpElasticCriteria.setPublic(!isAuthenticated);
dmps = apiContext.getOperationsContext().getElasticRepository().getDmpRepository().query(dmpElasticCriteria);
}catch (Exception e) {
logger.warn(e.getMessage(), e);
datasets = null;
}
}
if (dmps != null && !dmps.isEmpty()) {
List<Dmp> finalDmps = dmps;
dmpList = dataManagementPlanRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDmps.stream().map(Dmp::getId).collect(Collectors.toList()))).distinct();
} else {
dmpList = dataManagementPlanRepository.getWithCriteria(dataManagementPlanCriteria).distinct();
}
if (datasets != null && !datasets.isEmpty()) {
List<eu.eudat.elastic.entities.Dataset> finalDatasets = datasets;
datasetList = datasetRepository.asQueryable().where((builder, root) -> root.get("id").in(finalDatasets.stream().map(x -> UUID.fromString(x.getId())).collect(Collectors.toList())));
} else {
datasetList = datasetRepository.getWithCriteria(datasetCriteria);
}
if (isAuthenticated) {
List<Integer> roles = new LinkedList<>();
dmpList = dataManagementPlanRepository.getAuthenticated(dmpList, principal.getId(), roles);
datasetList = datasetRepository.getAuthenticated(datasetList, user, roles);
}
PaginationService.applyOrder(dmpList, tableRequest.getOrderings());
for (int i = 0; i< tableRequest.getOrderings().getFields().length; i++) {
if (tableRequest.getOrderings().getFields()[i].contains("publishedAt")) {
String newField = tableRequest.getOrderings().getFields()[i].toCharArray()[0] + "dmp:publishedAt|join|";
tableRequest.getOrderings().getFields()[i] = newField;
}
}
PaginationService.applyOrder(datasetList, tableRequest.getOrderings());
/*CompletableFuture future = CompletableFuture.runAsync(() -> */{
recentActivityModels.addAll(dmpList
.withHint(HintedModelFactory.getHint(RecentDmpModel.class))
// .orderBy((builder, root) -> builder.desc(root.get(tableRequest.getCriteria().getOrder())))
.skip(tableRequest.getDmpOffset())
.take(tableRequest.getLength())
.select(item -> {
item.setDataset(
item.getDataset().stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue())).collect(Collectors.toList()).stream()
.filter(dataset -> dataset.getDmp().getUsers().stream()
.filter(x -> x.getUser().getId().equals(principal.getId()))
.collect(Collectors.toList()).size() > 0)
.collect(Collectors.toSet()));
return new RecentDmpModel().fromEntity(item);
}));
recentActivityModels.addAll(datasetList
.withHint(HintedModelFactory.getHint(RecentDatasetModel.class))
// .orderBy((builder, root) -> builder.desc(root.get(tableRequest.getCriteria().getOrder())))
.skip(tableRequest.getDatasetOffset())
.take(tableRequest.getLength())
.select(item -> {
return new RecentDatasetModel().fromEntity(item);
}));
}/*);*/
//GK: Shuffle the deck otherwise we will summon the DMPodia when sorting with status
int pos = -1;
for (int i = (recentActivityModels.size() / 2); i < recentActivityModels.size(); i++) {
RecentActivityModel recentActivityModel = recentActivityModels.remove(i);
while (pos < recentActivityModels.size()) {
pos++;
if (pos % 2 != 0) {
break;
}
}
recentActivityModels.add(pos, recentActivityModel);
}
//CompletableFuture.allOf(future).join();
// CompletableFuture.allOf(dmps, datasets).join();
return recentActivityModels.stream().sorted(this.comparators.get(tableRequest.getCriteria().getOrder())).limit(tableRequest.getLength()).collect(Collectors.toList());
}
public List<SearchBarItem> searchUserData(String like, Principal principal) {
UserInfo user = new UserInfo();
user.setId(principal.getId());

184
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
View File

@ -50,10 +50,7 @@ import eu.eudat.models.data.funder.FunderDMPEditorModel;
import eu.eudat.models.data.grant.GrantDMPEditorModel;
import eu.eudat.models.data.helpermodels.Tuple;
import eu.eudat.models.data.helpers.common.DataTableData;
import eu.eudat.models.data.listingmodels.DataManagementPlanListingModel;
import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
import eu.eudat.models.data.listingmodels.DatasetListingModel;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import eu.eudat.models.data.listingmodels.*;
import eu.eudat.models.data.project.ProjectDMPEditorModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.models.data.user.composite.PagedDatasetProfile;
@ -87,6 +84,7 @@ import java.io.*;
import java.math.BigInteger;
import java.nio.file.Files;
import java.time.Instant;
import java.time.temporal.ChronoUnit;
import java.util.*;
import java.util.concurrent.CompletableFuture;
import java.util.stream.Collectors;
@ -158,6 +156,7 @@ public class DataManagementPlanManager {
if (fieldsGroup.equals("listing")) {
if (!dataManagementPlanTableRequest.getCriteria().isOnlyPublic()) {
itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
.distinct()
.selectAsync(item -> {
item.setDataset(
item.getDataset().stream()
@ -171,6 +170,7 @@ public class DataManagementPlanManager {
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
} else {
itemsFuture = pagedItems.withHint(HintedModelFactory.getHint(DataManagementPlanListingModel.class))
.distinct()
.selectAsync(item -> {
item.setDataset(
item.getDataset().stream()
@ -181,15 +181,17 @@ public class DataManagementPlanManager {
}
} else if (fieldsGroup.equals("autocomplete")) {
itemsFuture = pagedItems
.distinct()
.selectAsync(item -> new DataManagementPlanListingModel().fromDataModelAutoComplete(item))
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
} else {
itemsFuture = pagedItems
.distinct()
.selectAsync(item -> new DataManagementPlanListingModel().fromDataModelAssociatedProfiles(item))
.whenComplete((resultList, throwable) -> dataTable.setData(resultList));
}
CompletableFuture countFuture = authItems.countAsync().whenComplete((count, throwable) -> dataTable.setTotalCount(count));
CompletableFuture countFuture = authItems.distinct().countAsync().whenComplete((count, throwable) -> dataTable.setTotalCount(count));
CompletableFuture.allOf(itemsFuture, countFuture).join();
return dataTable;
}
@ -207,6 +209,24 @@ public class DataManagementPlanManager {
throw new ForbiddenException("Selected DMP is not public");
}
dataManagementPlan.fromDataModel(dataManagementPlanEntity);
List<Dataset> datasetEnities = new ArrayList<>(dataManagementPlanEntity.getDataset());
/*for (int i = 0; i < datasetEnities.size(); i++) {
for (int j = i; j < dataManagementPlan.getDatasets().size(); j++) {
if (dataManagementPlan.getDatasets().get(j).getId().equals(datasetEnities.get(i).getId())) {
dataManagementPlan.getDatasets().get(j).setDatasetProfileDefinition(datasetManager.getPagedProfile(dataManagementPlan.getDatasets().get(j), datasetEnities.get(i)));
break;
}
}
}*/
datasetEnities.stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED) && !dataset.getStatus().equals(Dataset.Status.CANCELED))
.forEach(dataset -> {
dataManagementPlan.getDatasets().stream().filter(datasetWizardModel -> datasetWizardModel.getId().equals(dataset.getId())).forEach(datasetWizardModel -> {
DatasetWizardModel wizardModel = datasetManager.getSingle(datasetWizardModel.getId().toString(), principal);
datasetWizardModel.setDatasetProfileDefinition(wizardModel.getDatasetProfileDefinition());
datasetWizardModel.setTags(wizardModel.getTags());
});
});
if (isPublic) {
dataManagementPlan.setDatasets(dataManagementPlan.getDatasets().stream().filter(dataset -> dataset.getStatus() == Dataset.Status.FINALISED.getValue()).collect(Collectors.toList()));
}
@ -301,19 +321,49 @@ public class DataManagementPlanManager {
return data;
}
public List<VersionListingModel> getAllVersions(String groupId, Principal principal) {
UUID principalId = principal.getId();
List<VersionListingModel> versions = new ArrayList<>();
QueryableList<DMP> items = null;
QueryableList<DMP> authItems = null;
List<Integer> roles = new LinkedList<>();
DataManagementPlanCriteria criteria = new DataManagementPlanCriteria();
criteria.setGroupIds(Collections.singletonList(UUID.fromString(groupId)));
criteria.setAllVersions(true);
criteria.setIsPublic(principalId == null);
criteria.setOnlyPublic(principalId == null);
items = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getWithCriteria(criteria);
if (principalId != null) {
authItems = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().getAuthenticated(items, principalId, roles);
} else {
authItems = items;
}
CompletableFuture<List<VersionListingModel>> versionFuture = authItems.withHint(HintedModelFactory.getHint(VersionListingModel.class))
.orderBy(((builder, root) -> builder.desc(root.get("version"))))
.selectAsync(item -> new VersionListingModel().fromDataModel(item))
.whenComplete(((versionListingModels, throwable) -> versions.addAll(versionListingModels)));
CompletableFuture.allOf(versionFuture).join();
return versions;
}
/*
* Data Management
* */
public DMP createOrUpdate(ApiContext apiContext, DataManagementPlanEditorModel dataManagementPlan, Principal principal) throws Exception {
public DMP createOrUpdate(DataManagementPlanEditorModel dataManagementPlan, Principal principal) throws Exception {
boolean setNotification = false;
if (dataManagementPlan.getId() != null) {
DMP dmp1 = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(dataManagementPlan.getId());
Instant dbTime = Instant.ofEpochMilli(dmp1.getModified().getTime()).truncatedTo(ChronoUnit.SECONDS);
Instant modelTime = Instant.ofEpochMilli(dataManagementPlan.getModified().getTime()).truncatedTo(ChronoUnit.SECONDS);
if (!isUserOwnerOfDmp(dmp1, principal)) {
throw new Exception("User not being the creator is not authorized to edit this DMP.");
}
if (dmp1.getModified().getTime() != dataManagementPlan.getModified().getTime()) {
if (dbTime.toEpochMilli() != modelTime.toEpochMilli()) {
throw new Exception("Another user have already edit that DMP.");
}
List<Dataset> datasetList = new ArrayList<>(dmp1.getDataset());
@ -360,7 +410,9 @@ public class DataManagementPlanManager {
}
}
checkIfUserCanEditGrant(newDmp, user);
if (newDmp.getGrant().getType().equals(Grant.GrantType.INTERNAL.getValue())) {
checkIfUserCanEditGrant(newDmp, user);
}
assignGrandUserIfInternal(newDmp, user);
assignFunderUserIfInternal(newDmp, user);
assignProjectUserIfInternal(newDmp, user);
@ -382,11 +434,14 @@ public class DataManagementPlanManager {
apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao()
.asQueryable().where((builder, root) -> root.get("id").in(dataManagementPlan.getDatasetsToBeFinalized()))
.update(root -> root.<Integer>get("status"), Dataset.Status.FINALISED.getValue());
apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao()
.asQueryable().where((builder, root) -> root.get("id").in(dataManagementPlan.getDatasetsToBeFinalized()))
.update(root -> root.<Date>get("finalizedat"), new Date());
List<UUID> datasetsToBeCanceled = new LinkedList<>();
for (DatasetListingModel dataset : dataManagementPlan.getDatasets()) {
if (!(dataset.getStatus() == (int) Dataset.Status.FINALISED.getValue()) && !dataManagementPlan.getDatasetsToBeFinalized().contains(UUID.fromString(dataset.getId()))) {
datasetsToBeCanceled.add(UUID.fromString(dataset.getId()));
for (DatasetWizardModel dataset : dataManagementPlan.getDatasets()) {
if (!(dataset.getStatus() == (int) Dataset.Status.FINALISED.getValue()) && !dataManagementPlan.getDatasetsToBeFinalized().contains(dataset.getId())) {
datasetsToBeCanceled.add(UUID.fromString(dataset.getId().toString()));
}
}
if (!datasetsToBeCanceled.isEmpty())
@ -395,9 +450,9 @@ public class DataManagementPlanManager {
.update(root -> root.<Integer>get("status"), Dataset.Status.CANCELED.getValue());
} else {
List<UUID> datasetsToBeCanceled = new LinkedList<>();
for (DatasetListingModel dataset : dataManagementPlan.getDatasets()) {
for (DatasetWizardModel dataset : dataManagementPlan.getDatasets()) {
if (!(dataset.getStatus() == (int) Dataset.Status.FINALISED.getValue())) {
datasetsToBeCanceled.add(UUID.fromString(dataset.getId()));
datasetsToBeCanceled.add(dataset.getId());
}
}
if (!datasetsToBeCanceled.isEmpty())
@ -423,7 +478,49 @@ public class DataManagementPlanManager {
return newDmp;
}
public void newVersion(UUID uuid, DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
public DMP createOrUpdateWithDatasets(DataManagementPlanEditorModel dataManagementPlan, Principal principal) throws Exception {
if (dataManagementPlan.getId() != null) {
DMP dmp1 = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(dataManagementPlan.getId());
Instant dbTime = Instant.ofEpochMilli(dmp1.getModified().getTime()).truncatedTo(ChronoUnit.SECONDS);
Instant modelTime = Instant.ofEpochMilli(dataManagementPlan.getModified().getTime()).truncatedTo(ChronoUnit.SECONDS);
if (!isUserOwnerOfDmp(dmp1, principal)) {
throw new Exception("User not being the creator is not authorized to edit this DMP.");
}
if (dbTime.toEpochMilli() != modelTime.toEpochMilli()) {
throw new Exception("Another user have already edit that DMP.");
}
for (DatasetWizardModel dataset : dataManagementPlan.getDatasets()) {
if (dataManagementPlan.getProfiles().stream().filter(associatedProfile -> dataset.getProfile().getId().equals(associatedProfile.getId())).findAny().orElse(null) == null)
throw new Exception("Dataset Template for Dataset Description is missing from the DMP.");
}
if (dataManagementPlan.getStatus() == (int) DMP.DMPStatus.FINALISED.getValue() && dmp1.getStatus().equals(DMP.DMPStatus.FINALISED.getValue()))
throw new Exception("DMP is finalized, therefore cannot be edited.");
}
List<Dataset> datasets = new ArrayList<>();
DMP tempDMP = dataManagementPlan.toDataModel();
if (tempDMP.getStatus() == (int) DMP.DMPStatus.FINALISED.getValue()) {
checkDmpValidationRules(tempDMP);
}
UserInfo user = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal.getId());
createOrganisationsIfTheyDontExist(tempDMP, apiContext.getOperationsContext().getDatabaseRepository().getOrganisationDao());
createResearchersIfTheyDontExist(tempDMP, apiContext.getOperationsContext().getDatabaseRepository().getResearcherDao(), user);
createFunderIfItDoesntExist(tempDMP, apiContext.getOperationsContext().getDatabaseRepository().getFunderDao());
createGrantIfItDoesntExist(tempDMP, apiContext.getOperationsContext().getDatabaseRepository().getGrantDao());
DMP result = createOrUpdate(dataManagementPlan, principal);
for (DatasetWizardModel datasetWizardModel: dataManagementPlan.getDatasets()) {
datasetWizardModel.setDmp(new DataManagementPlan().fromDataModel(result));
Dataset dataset = datasetManager.createOrUpdate(datasetWizardModel, principal);
datasets.add(dataset);
}
return result;
}
public UUID newVersion(UUID uuid, DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
DMP oldDmp = databaseRepository.getDmpDao().find(uuid);
if (!isUserOwnerOfDmp(oldDmp, principal)) {
throw new Exception("User not being the creator is not authorized to perform this action.");
@ -473,13 +570,13 @@ public class DataManagementPlanManager {
newDmp.setDataset(new HashSet<>(databaseRepository.getDatasetDao().getWithCriteria(criteria1).toList()));
this.updateGroupIndex(newDmp.getGroupId());
return newDmp.getId();
} else {
throw new DMPNewVersionException("Version to update not the latest.");
}
}
public void clone(DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
public UUID clone(DataManagementPlanNewVersionModel dataManagementPlan, Principal principal) throws Exception {
DMP newDmp = dataManagementPlan.toDataModel();
UserInfo user = apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserInfoBuilder.class).id(principal.getId()).build();
@ -515,6 +612,8 @@ public class DataManagementPlanManager {
newDmp.setDataset(new HashSet<>(databaseRepository.getDatasetDao().getWithCriteria(criteria1).toList()));
this.updateIndex(newDmp);
return newDmp.getId();
}
public void delete(UUID uuid) throws DMPWithDatasetsDeleteException, IOException {
@ -817,8 +916,15 @@ public class DataManagementPlanManager {
apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao()
.asQueryable().where((builder, root) -> root.get("id").in(datasetsToBeFinalized.getUuids()))
.update(root -> root.<Integer>get("status"), Dataset.Status.FINALISED.getValue());
apiContext.getOperationsContext().getDatabaseRepository().getDatasetDao()
.asQueryable().where((builder, root) -> root.get("id").in(datasetsToBeFinalized.getUuids()))
.update(root -> root.<Date>get("finalizedAt"), new Date());
List<Dataset> finalizedDatasets = dmp.getDataset().stream().filter(dataset -> datasetsToBeFinalized.getUuids().contains(dataset.getId())).collect(Collectors.toList());
finalizedDatasets.forEach(dataset -> dataset.setStatus(Dataset.Status.FINALISED.getValue()));
finalizedDatasets.forEach(dataset ->{
dataset.setStatus(Dataset.Status.FINALISED.getValue());
dataset.setFinalizedAt(new Date());
dataset.setModified(new Date());
} );
indexDatasets.addAll(finalizedDatasets);
List<UUID> datasetsToBeCanceled = new LinkedList<>();
for (Dataset dataset : dmp.getDataset()) {
@ -867,12 +973,24 @@ public class DataManagementPlanManager {
this.updateIndex(dmp);
}
public void updateUsers(UUID id, List<UserInfoListingModel> users, Principal principal) throws Exception {
DMP dmp = this.apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(id);
if (!isUserOwnerOfDmp(dmp, principal))
throw new Exception("User does not have the privilege to do this action.");
clearUsers(dmp);
for (UserInfoListingModel userListing : users) {
UserInfo tempUser = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(userListing.getId());
assignUser(dmp, tempUser, UserDMP.UserDMPRoles.fromInteger(userListing.getRole()));
}
}
/*
* Export Data
* */
public FileEnvelope getWordDocument(String id, Principal principal, ConfigLoader configLoader) throws IOException {
return this.getWordDocument(id, principal, configLoader, false);
return this.getWordDocument(id, principal, configLoader, true);
}
public FileEnvelope getWordDocument(String id, Principal principal, ConfigLoader configLoader, Boolean versioned) throws IOException {
@ -1021,11 +1139,9 @@ public class DataManagementPlanManager {
document.removeBodyElement(0);
}
String fileName = "";
String fileName = "DMP_" + dmpEntity.getGrant().getLabel();
if (versioned) {
fileName = dmpEntity.getLabel() + " v" + dmpEntity.getVersion();
} else {
fileName = dmpEntity.getLabel();
fileName += "_" + dmpEntity.getVersion();
}
fileName = fileName.replaceAll("[^a-zA-Z0-9+ ]", "");
FileEnvelope exportEnvelope = new FileEnvelope();
@ -1171,7 +1287,7 @@ public class DataManagementPlanManager {
writer.close();
FileEnvelope fileEnvelope = new FileEnvelope();
fileEnvelope.setFile(xmlFile);
fileEnvelope.setFilename(dmp.getLabel() + ".xml");
fileEnvelope.setFilename("DMP_" + dmp.getGrant().getLabel() + "_" + dmp.getVersion() + ".xml");
return fileEnvelope;
}
@ -1185,7 +1301,7 @@ public class DataManagementPlanManager {
/*ObjectMapper mapper = new ObjectMapper();
mapper.setSerializationInclusion(JsonInclude.Include.NON_NULL);*/
String fileName = dmp.getLabel();
String fileName = "DMP_" + dmp.getGrant().getLabel() + "_" + dmp.getVersion();//dmp.getLabel();
fileName = fileName.replaceAll("[^a-zA-Z0-9+ ]", "");
String uuid = UUID.randomUUID().toString();
File file = new File(this.environment.getProperty("temp.temp") + uuid + ".json");
@ -1341,7 +1457,7 @@ public class DataManagementPlanManager {
dm.setDefinition(dmpProfile);
//createOrUpdate(apiContext, dm, principal);
DMP dmp = this.createOrUpdate(apiContext, dm, principal);
DMP dmp = this.createOrUpdate(dm, principal);
if (dmp.getOrganisations() == null) {
dmp.setOrganisations(new HashSet<>());
}
@ -1802,21 +1918,17 @@ public class DataManagementPlanManager {
if (!update) {
if (unpublishedUrl == null) {
// Second step, add the file to the entry.
HttpHeaders fileHeaders = new HttpHeaders();
fileHeaders.setContentType(MediaType.MULTIPART_FORM_DATA);
LinkedMultiValueMap<String, Object> addFileMap = new LinkedMultiValueMap<>();
FileEnvelope file = getWordDocument(id.toString(), principal, configLoader);
addFileMap.add("filename", file.getFilename());
FileSystemResource fileSystemResource = new FileSystemResource(file.getFile());
addFileMap.add("file", fileSystemResource);
HttpEntity<MultiValueMap<String, Object>> addFileMapRequest = new HttpEntity<>(addFileMap, fileHeaders);
String name = file.getFilename().substring(0, file.getFilename().length() - 5);
File pdfFile = datasetManager.convertToPDF(file, environment);
String fileName = name + ".pdf";
FileSystemResource fileSystemResource = new FileSystemResource(pdfFile);
HttpEntity<FileSystemResource> addFileMapRequest = new HttpEntity<>(fileSystemResource, null);
String addFileUrl = links.get("files") + "?access_token=" + zenodoToken;
ResponseEntity<String> addFileResponse = restTemplate.postForEntity(addFileUrl, addFileMapRequest, String.class);
String addFileUrl = links.get("bucket") + "/" + fileName + "?access_token=" + zenodoToken;
restTemplate.put(addFileUrl, addFileMapRequest);
Files.deleteIfExists(file.getFile().toPath());
// Third post call to Zenodo to publish the entry and return the DOI.
publishUrl = links.get("publish") + "?access_token=" + zenodoToken;
} else {

90
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetManager.java
View File

@ -17,6 +17,7 @@ import eu.eudat.data.query.items.table.datasetprofile.DatasetProfileTableRequest
import eu.eudat.elastic.criteria.DatasetCriteria;
import eu.eudat.elastic.entities.Tag;
import eu.eudat.elastic.repository.DatasetRepository;
import eu.eudat.exceptions.security.ForbiddenException;
import eu.eudat.exceptions.security.UnauthorisedException;
import eu.eudat.logic.builders.BuilderFactory;
import eu.eudat.logic.builders.entity.UserInfoBuilder;
@ -32,9 +33,11 @@ import eu.eudat.logic.utilities.documents.xml.ExportXmlBuilder;
import eu.eudat.logic.utilities.helpers.StreamDistinctBy;
import eu.eudat.logic.utilities.json.JsonSearcher;
import eu.eudat.models.HintedModelFactory;
import eu.eudat.models.data.dataset.DatasetOverviewModel;
import eu.eudat.models.data.datasetImport.DatasetImportField;
import eu.eudat.models.data.datasetImport.DatasetImportPagedDatasetProfile;
import eu.eudat.models.data.datasetprofile.DatasetProfileListingModel;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.dmp.AssociatedProfile;
import eu.eudat.models.data.dmp.DataManagementPlan;
@ -49,6 +52,7 @@ import org.apache.poi.xwpf.extractor.XWPFWordExtractor;
import org.apache.poi.xwpf.usermodel.XWPFDocument;
import org.apache.poi.xwpf.usermodel.XWPFParagraph;
import org.apache.poi.xwpf.usermodel.XWPFRun;
import org.json.JSONArray;
import org.json.JSONObject;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -67,6 +71,7 @@ import org.w3c.dom.NodeList;
import javax.activation.MimetypesFileTypeMap;
import javax.persistence.criteria.Join;
import javax.persistence.criteria.JoinType;
import javax.transaction.Transactional;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBException;
import javax.xml.bind.Unmarshaller;
@ -163,7 +168,7 @@ public class DatasetManager {
QueryableList<eu.eudat.data.entities.Dataset> authItems;
if (!datasetTableRequest.getCriteria().getIsPublic()) {
if (principal.getId() == null) {
throw new UnauthorisedException();
throw new UnauthorisedException("You are not allowed to access those datasets");
}
if (datasetTableRequest.getCriteria().getRole() != null)
roles.add(datasetTableRequest.getCriteria().getRole());
@ -177,24 +182,19 @@ public class DatasetManager {
});
}
String[] strings = new String[1];
strings[0] = "-dmp:publishedAt|join|";
datasetTableRequest.getOrderings().setFields(strings);
//strings[0] = "-dmp:publishedAt|join|";
//datasetTableRequest.getOrderings().setFields(strings);
authItems = items;
pagedItems = PaginationManager.applyPaging(items, datasetTableRequest);
}
DataTableData<DatasetListingModel> dataTable = new DataTableData<>();
CompletableFuture<List<DatasetListingModel>> itemsFuture = pagedItems.
selectAsync(item -> new DatasetListingModel().fromDataModel(item)).whenComplete((resultList, throwable) -> {
dataTable.setData(resultList);
});
dataTable.setData(pagedItems.select(this::mapModel).stream().filter(Objects::nonNull).collect(Collectors.toList()));
CompletableFuture countFuture = authItems.countAsync().whenComplete((count, throwable) -> {
dataTable.setTotalCount(count);
});
dataTable.setTotalCount(authItems.count());
CompletableFuture.allOf(itemsFuture, countFuture).join();
//CompletableFuture.allOf(itemsFuture, countFuture).join();
return dataTable;
}
@ -240,8 +240,8 @@ public class DatasetManager {
DataTableData<DatasetListingModel> dataTable = new DataTableData<>();
CompletableFuture<List<DatasetListingModel>> itemsFuture = pagedItems.
selectAsync(item -> new DatasetListingModel().fromDataModel(item)).whenComplete((resultList, throwable) -> {
dataTable.setData(resultList);
selectAsync(this::mapModel).whenComplete((resultList, throwable) -> {
dataTable.setData(resultList.stream().filter(Objects::nonNull).collect(Collectors.toList()));
});
CompletableFuture countFuture = pagedItems.countAsync().whenComplete((count, throwable) -> {
@ -257,7 +257,7 @@ public class DatasetManager {
eu.eudat.data.entities.Dataset datasetEntity = databaseRepository.getDatasetDao().find(UUID.fromString(id), HintedModelFactory.getHint(DatasetWizardModel.class));
if (datasetEntity.getDmp().getUsers()
.stream().filter(userInfo -> userInfo.getUser().getId() == principal.getId())
.collect(Collectors.toList()).size() == 0)
.collect(Collectors.toList()).size() == 0 && !datasetEntity.getDmp().isPublic())
throw new UnauthorisedException();
eu.eudat.elastic.entities.Dataset datasetElastic;
try {
@ -296,7 +296,11 @@ public class DatasetManager {
Stream<DatasetProfile> sorted = profileVersionsIncluded.stream().sorted(Comparator.comparing(DatasetProfile::getVersion).reversed());
// Make the Stream into List and get the first item.
DatasetProfile profile = sorted.collect(Collectors.toList()).iterator().next();
List<DatasetProfile> profiles = sorted.collect(Collectors.toList());
if (profiles.isEmpty())
throw new NoSuchElementException("No profiles found for the specific Dataset");
DatasetProfile profile = profiles.get(0);
// Check if the dataset is on the latest Version.
boolean latestVersion = profile.getVersion().toString().equals(datasetEntity.getProfile().getVersion().toString());
@ -325,6 +329,26 @@ public class DatasetManager {
}
}
public DatasetOverviewModel getOverviewSingle(String id, Principal principal, boolean isPublic) throws Exception {
Dataset datasetEntity = databaseRepository.getDatasetDao().find(UUID.fromString(id));
if (datasetEntity.getStatus() == Dataset.Status.DELETED.getValue()) {
throw new Exception("Dataset is deleted.");
}
if (!isPublic && principal == null) {
throw new UnauthorisedException();
} else
if (!isPublic && datasetEntity.getDmp().getUsers()
.stream().noneMatch(userInfo -> userInfo.getUser().getId() == principal.getId())) {
throw new UnauthorisedException();
} else if (isPublic && !datasetEntity.getDmp().isPublic()) {
throw new ForbiddenException("Selected Dataset is not public");
}
DatasetOverviewModel dataset = new DatasetOverviewModel();
dataset.fromDataModel(datasetEntity);
return dataset;
}
public PagedDatasetProfile getPagedProfile(DatasetWizardModel dataset, eu.eudat.data.entities.Dataset datasetEntity) {
eu.eudat.models.data.user.composite.DatasetProfile datasetprofile = userManager.generateDatasetProfileModel(datasetEntity.getProfile());
datasetprofile.setStatus(dataset.getStatus());
@ -584,7 +608,7 @@ public class DatasetManager {
if (datasetWizardModel.getDmp().getGrant() == null) {
datasetWizardModel.setDmp(new DataManagementPlan().fromDataModelNoDatasets(dataset1.getDmp()));
}
dataset1.setProfile(this.apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(datasetWizardModel.getProfile()));
dataset1.setProfile(this.apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().find(datasetWizardModel.getProfile().getId()));
// datasetWizardModel.setDatasetProfileDefinition(getPagedProfile(datasetWizardModel, dataset1));
updateTags(dataset1, datasetWizardModel.getTags());
if (sendNotification) {
@ -916,7 +940,7 @@ public class DatasetManager {
// Sets the latest version of dataet Profile to the Dataset in question.
dataset.setDatasetProfileDefinition(getLatestDatasetProfile(datasetEntity, item));
dataset.setProfile(item.getId());
dataset.setProfile(new DatasetProfileOverviewModel().fromDataModel(item));
// Now at latest version.
dataset.setIsProfileLatestVersion(true);
@ -995,15 +1019,12 @@ public class DatasetManager {
if (!tagNodes.isEmpty()) {
tagNodes.forEach(node -> {
JsonNode value = node.get("value");
if (value.isArray()) {
value.elements().forEachRemaining(element -> {
try {
Map<String, String> data = mapper.readValue(element.asText(), HashMap.class);
this.addTag(tags, wizardModel.getTags(), data.get("id"), data.get("name"));
} catch (IOException e) {
logger.error(e.getMessage(), e);
}
String stringValue = value.asText().replaceAll("=", ":");
JSONArray values = new JSONArray(stringValue);
if (values != null) {
values.iterator().forEachRemaining(element -> {
Map<String, Object> data = ((JSONObject) element).toMap();
this.addTag(tags, wizardModel.getTags(), data.get("id").toString(), data.get("name").toString());
});
} else {
this.addTag(tags, wizardModel.getTags(), "", value.asText());
@ -1024,4 +1045,21 @@ public class DatasetManager {
dstTags.add(tag);
}
}
@Transactional
private DatasetListingModel mapModel(Dataset item) {
if (item.getProfile() == null)
return null;
DatasetListingModel listingModel = new DatasetListingModel().fromDataModel(item);
DatasetProfileCriteria criteria = new DatasetProfileCriteria();
criteria.setGroupIds(Collections.singletonList(item.getProfile().getGroupId()));
List<DatasetProfile> profiles = apiContext.getOperationsContext().getDatabaseRepository().getDatasetProfileDao().getWithCriteria(criteria).toList();
boolean islast = false;
if (!profiles.isEmpty()) {
profiles = profiles.stream().sorted(Comparator.comparing(DatasetProfile::getVersion)).collect(Collectors.toList());
islast = profiles.get(0).getId().equals(item.getProfile().getId());
}
listingModel.setProfileLatestVersion(islast);
return listingModel;
}
}

28
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetProfileManager.java
View File

@ -26,6 +26,10 @@ import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.core.env.Environment;
import org.springframework.http.*;
import org.springframework.http.client.ClientHttpRequestFactory;
import org.springframework.http.client.SimpleClientHttpRequestFactory;
import org.springframework.http.converter.HttpMessageConverter;
import org.springframework.http.converter.json.MappingJackson2HttpMessageConverter;
import org.springframework.stereotype.Component;
import org.springframework.web.client.RestTemplate;
import org.springframework.web.multipart.MultipartFile;
@ -109,7 +113,9 @@ public class DatasetProfileManager {
public List<ExternalAutocompleteFieldModel> getAutocomplete(AutoCompleteData data, String like) {
List<ExternalAutocompleteFieldModel> result = new LinkedList<>();
RestTemplate restTemplate = new RestTemplate();
SimpleClientHttpRequestFactory simpleFactory = new SimpleClientHttpRequestFactory();
RestTemplate restTemplate = new RestTemplate(simpleFactory);
HttpHeaders headers = new HttpHeaders();
DocumentContext jsonContext = null;
HttpEntity<String> entity;
@ -122,8 +128,12 @@ public class DatasetProfileManager {
String url = singleData.getUrl();
String mediaType = "";
if (url.contains("openaire")) {
mediaType = "application/json; charset=utf-8";
if (url.contains("openaire") || url.contains("zenodo")) {
mediaType = "application/json; charset=utf-8";
if (url.contains("zenodo")) {
url = url.replace("?", "/?");
}
url = url.replace("{like}", like.equals("") ? "*" : like);
url = url.replace("%20", " ");
url = url.replace("%22", "\"");
@ -133,14 +143,17 @@ public class DatasetProfileManager {
url += "?search=" + like;
}
headers.setAccept(Collections.singletonList(MediaType.valueOf(mediaType)));
if (!url.contains("zenodo")) {
headers.setAccept(Collections.singletonList(MediaType.valueOf(mediaType)));
}
headers.setContentType(MediaType.APPLICATION_JSON);
entity = new HttpEntity<>("parameters", headers);
response = restTemplate.exchange(url, HttpMethod.GET, entity, Object.class);
jsonContext = JsonPath.parse(response.getBody());
jsonItems = jsonContext.read(singleData.getOptionsRoot() + "['" + singleData.getAutoCompleteOptions().getLabel() + "','" + singleData.getAutoCompleteOptions().getValue() + "','" + singleData.getAutoCompleteOptions().getSource() + "','" + "uri" + "']");
jsonItems.forEach(item -> result.add(new ExternalAutocompleteFieldModel(item.get(singleData.getAutoCompleteOptions().getValue()), item.get(singleData.getAutoCompleteOptions().getLabel()), item.get(singleData.getAutoCompleteOptions().getSource()), item.get("uri"))));
jsonItems.forEach(item -> result.add(new ExternalAutocompleteFieldModel(item.get(singleData.getAutoCompleteOptions().getValue()), item.get(singleData.getAutoCompleteOptions().getLabel()), item.get(singleData.getAutoCompleteOptions().getSource()) != null ? item.get(singleData.getAutoCompleteOptions().getSource()) : singleData.getAutoCompleteOptions().getSource(), item.get("uri"))));
break;
case CACHED:
headers.setAccept(Collections.singletonList(MediaType.valueOf("text/plain; charset=utf-8")));
@ -199,7 +212,10 @@ public class DatasetProfileManager {
public eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.DatasetProfile createDatasetProfileFromXml(MultipartFile multiPartFile) {
ImportXmlBuilderDatasetProfile xmlBuilder = new ImportXmlBuilderDatasetProfile();
try {
return xmlBuilder.build(convert(multiPartFile));
File localFile = convert(multiPartFile);
eu.eudat.logic.utilities.documents.xml.datasetProfileXml.datasetProfileModel.DatasetProfile profile = xmlBuilder.build(localFile);
Files.deleteIfExists(localFile.toPath());
return profile;
} catch (IOException e) {
logger.error(e.getMessage(), e);
}

65
dmp-backend/web/src/main/java/eu/eudat/logic/managers/InvitationsManager.java
View File

@ -7,15 +7,18 @@ import eu.eudat.exceptions.security.UnauthorisedException;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.utilities.helpers.StreamDistinctBy;
import eu.eudat.models.data.invitation.Invitation;
import eu.eudat.models.data.invitation.Properties;
import eu.eudat.models.data.security.Principal;
import eu.eudat.models.data.userinfo.UserInfoInvitationModel;
import eu.eudat.queryable.QueryableList;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.stereotype.Component;
import java.util.Collection;
import java.util.LinkedList;
import java.util.List;
import java.util.UUID;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.JAXBException;
import javax.xml.bind.Unmarshaller;
import java.io.StringReader;
import java.util.*;
import java.util.stream.Collectors;
import java.util.stream.Stream;
@ -32,12 +35,19 @@ public class InvitationsManager {
public void inviteUsers(Invitation invitation, Principal principal) throws Exception {
UserInfo principalUser = new UserInfo();
principalUser.setId(principal.getId());
invitation.getUsers().stream().filter(item -> item.getId() == null).forEach(item -> {
UserInfo existingUser = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().asQueryable().where((builder, root) -> builder.equal(root.get("email"), item.getEmail())).getSingleOrDefault();
if (existingUser != null) {
item.setId(existingUser.getId());
}
});
List<UserInfoInvitationModel> alreadySignedInUsers = invitation.getUsers().stream().filter(item -> item.getId() != null).collect(Collectors.toList());
List<UserInfo> alreadySignedInUsersEntities = alreadySignedInUsers.stream().map(UserInfoInvitationModel::toDataModel).collect(Collectors.toList());
List<UserDMP> userInfoToUserDmp = new LinkedList<>();
for (UserInfo userInfo : alreadySignedInUsersEntities) {
UserDMP userDMP = new UserDMP();
userDMP.setUser(userInfo);
userDMP.setRole(invitation.getRole());
userInfoToUserDmp.add(userDMP);
/*if (!apiContext.getOperationsContext().getDatabaseRepository().getUserAssociationDao().areAssociated(principalUser, userInfo)) {
UserAssociation userAssociation = new UserAssociation();
@ -47,7 +57,7 @@ public class InvitationsManager {
}*/
}
DMP dataManagementPlan = apiContext.getOperationsContext().getDatabaseRepository().getDmpDao().find(invitation.getDataManagementPlan());
apiContext.getUtilitiesService().getInvitationService().createInvitations(apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao(), apiContext.getUtilitiesService().getMailService(), invitation.getUsers().stream().map(UserInfoInvitationModel::toDataModel).collect(Collectors.toList()), dataManagementPlan, principalUser);
apiContext.getUtilitiesService().getInvitationService().createInvitations(apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao(), apiContext.getUtilitiesService().getMailService(), invitation.getUsers().stream().map(UserInfoInvitationModel::toDataModel).collect(Collectors.toList()), dataManagementPlan, invitation.getRole(), principalUser);
apiContext.getUtilitiesService().getInvitationService().assignToDmp(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao(), userInfoToUserDmp, dataManagementPlan);
}
@ -69,27 +79,50 @@ public class InvitationsManager {
return userModels;
}
public UUID assignUserAcceptedInvitation(UUID invitationID, Principal principal) throws UnauthorisedException {
public UUID assignUserAcceptedInvitation(UUID invitationID, Principal principal) throws UnauthorisedException, JAXBException {
eu.eudat.data.entities.Invitation invitation = apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao().find(invitationID);
if (invitation == null)
throw new UnauthorisedException("There is no Data Management Plan assigned to this Link");
if (invitation.getAcceptedInvitation()) throw new UnauthorisedException("This Url Has Expired");
JAXBContext context = JAXBContext.newInstance(Properties.class);
Unmarshaller unmarshaller = context.createUnmarshaller();
Properties properties = (Properties) unmarshaller.unmarshal(new StringReader(invitation.getProperties()));
UserInfo invitedUser = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(principal.getId());
UserDMP userDMP = new UserDMP();
userDMP.setUser(invitedUser);
userDMP.setDmp(invitation.getDmp());
userDMP.setRole(UserDMP.UserDMPRoles.USER.getValue());
QueryableList<UserDMP> userDMPQueryableList = apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().asQueryable().where(((builder, root) -> builder.and(builder.equal(root.get("dmp").get("id"), invitation.getDmp().getId()), builder.equal(root.get("user").get("id"), invitedUser.getId()))));
UserDMP existingUserDMP = userDMPQueryableList.getSingleOrDefault();
if (existingUserDMP != null) {
if (properties.getRole() != null && existingUserDMP.getRole() > properties.getRole()) {
existingUserDMP.setRole(properties.getRole());
DMP datamanagementPlan = invitation.getDmp();
apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(existingUserDMP);
apiContext.getUtilitiesService().getInvitationService().assignToDmp(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao(), existingUserDMP, datamanagementPlan);
invitation.setAcceptedInvitation(true);
apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao().createOrUpdate(invitation);
return datamanagementPlan.getId();
}
} else {
UserDMP userDMP = new UserDMP();
userDMP.setUser(invitedUser);
userDMP.setDmp(invitation.getDmp());
if (properties.getRole() != null) {
userDMP.setRole(properties.getRole());
} else {
userDMP.setRole(UserDMP.UserDMPRoles.USER.getValue());
}
/*if (!apiContext.getOperationsContext().getDatabaseRepository().getUserAssociationDao().areAssociated(invitedUser, invitation.getUser())) {
UserAssociation userAssociation = new UserAssociation();
userAssociation.setFirstUser(invitedUser);
userAssociation.setSecondUser(invitation.getUser());
apiContext.getOperationsContext().getDatabaseRepository().getUserAssociationDao().createOrUpdate(userAssociation);
}*/
DMP datamanagementPlan = invitation.getDmp();
apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(userDMP);
apiContext.getUtilitiesService().getInvitationService().assignToDmp(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao(), userDMP, datamanagementPlan);
invitation.setAcceptedInvitation(true);
apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao().createOrUpdate(invitation);
return datamanagementPlan.getId();
DMP datamanagementPlan = invitation.getDmp();
apiContext.getOperationsContext().getDatabaseRepository().getUserDmpDao().createOrUpdate(userDMP);
apiContext.getUtilitiesService().getInvitationService().assignToDmp(apiContext.getOperationsContext().getDatabaseRepository().getDmpDao(), userDMP, datamanagementPlan);
invitation.setAcceptedInvitation(true);
apiContext.getOperationsContext().getDatabaseRepository().getInvitationDao().createOrUpdate(invitation);
return datamanagementPlan.getId();
}
return invitation.getDmp().getId();
}
}

6
dmp-backend/web/src/main/java/eu/eudat/logic/managers/UserManager.java
View File

@ -24,6 +24,7 @@ import eu.eudat.models.data.dmp.DataManagementPlan;
import eu.eudat.models.data.doi.DOIRequest;
import eu.eudat.models.data.helpers.common.DataTableData;
import eu.eudat.models.data.login.Credentials;
import eu.eudat.models.data.principal.PrincipalModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.models.data.userinfo.UserListingModel;
import eu.eudat.models.data.userinfo.UserProfile;
@ -105,10 +106,11 @@ public class UserManager {
.createOrUpdate(userInfo);
}
public Principal authenticate(AuthenticationService authenticationServiceImpl, Credentials credentials) throws NullEmailException {
public PrincipalModel authenticate(AuthenticationService authenticationServiceImpl, Credentials credentials) throws NullEmailException {
Principal principal = authenticationServiceImpl.Touch(credentials);
if (principal == null) throw new UnauthorisedException("Could not Sign In User");
return principal;
PrincipalModel principalModel = PrincipalModel.fromEntity(principal);
return principalModel;
}
public DataTableData<UserListingModel> getCollaboratorsPaged(UserInfoTableRequestItem userInfoTableRequestItem, Principal principal) throws Exception {

5
dmp-backend/web/src/main/java/eu/eudat/logic/mapper/elastic/DatasetMapper.java
View File

@ -3,9 +3,7 @@ package eu.eudat.logic.mapper.elastic;
import eu.eudat.data.dao.criteria.DataManagementPlanCriteria;
import eu.eudat.data.entities.DMP;
import eu.eudat.elastic.criteria.DatasetCriteria;
import eu.eudat.elastic.entities.Collaborator;
import eu.eudat.elastic.entities.Dataset;
import eu.eudat.elastic.entities.Organization;
import eu.eudat.elastic.entities.Tag;
import eu.eudat.logic.managers.DatasetManager;
import eu.eudat.logic.services.ApiContext;
@ -39,6 +37,9 @@ public class DatasetMapper {
tags.forEach(tag -> tag.setId(UUID.randomUUID().toString()));
elastic.setTags(tags);
} else {
if (tags1.size() < tags.size()) {
tags.stream().filter(tag -> tag.getId() == null || tag.getId().equals("")).forEach(tag -> tags1.add(new Tag(UUID.randomUUID().toString(), tag.getName())));
}
elastic.setTags(tags1);
}
}

18
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/config/DataFieldsUrlConfiguration.java
View File

@ -15,6 +15,8 @@ public class DataFieldsUrlConfiguration {
private String path;
private String host;
private String types;
private String firstName;
private String lastName;
public String getId() {
return id;
@ -94,4 +96,20 @@ public class DataFieldsUrlConfiguration {
public void setTypes(String types) {
this.types = types;
}
@XmlElement(name = "firstName")
public String getFirstName() {
return firstName;
}
public void setFirstName(String firstName) {
this.firstName = firstName;
}
@XmlElement(name = "lastName")
public String getLastName() {
return lastName;
}
public void setLastName(String lastName) {
this.lastName = lastName;
}
}

188
dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcher.java
View File

@ -16,7 +16,14 @@ import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import org.springframework.beans.factory.annotation.Autowired;
import org.springframework.cache.annotation.Cacheable;
import org.springframework.http.HttpEntity;
import org.springframework.http.HttpHeaders;
import org.springframework.http.HttpMethod;
import org.springframework.http.HttpStatus;
import org.springframework.stereotype.Service;
import org.springframework.web.client.RestTemplate;
import org.springframework.http.MediaType;
import org.springframework.http.ResponseEntity;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.Unmarshaller;
@ -43,7 +50,7 @@ public class RemoteFetcher {
}
@Cacheable("repositories")
public List<Map<String, Object>> getRepositories(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getRepositories(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getRepositories().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getRepositories().getUrls();
@ -52,28 +59,28 @@ public class RemoteFetcher {
}
@Cacheable("grants")
public List<Map<String, Object>> getGrants(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getGrants(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs = configLoader.getExternalUrls().getGrants().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getGrants().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable("projects")
public List<Map<String, Object>> getProjects(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getProjects(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs = configLoader.getExternalUrls().getProjects().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getProjects().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable("funders")
public List<Map<String, Object>> getFunders(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getFunders(ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs = configLoader.getExternalUrls().getFunders().getUrls();
FetchStrategy fetchStrategy = configLoader.getExternalUrls().getFunders().getFetchMode();
return getAll(urlConfigs, fetchStrategy, externalUrlCriteria);
}
@Cacheable("organisations")
public List<Map<String, Object>> getOrganisations(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getOrganisations(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getOrganisations().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getOrganisations().getUrls();
@ -82,7 +89,7 @@ public class RemoteFetcher {
}
@Cacheable("registries")
public List<Map<String, Object>> getRegistries(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getRegistries(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getRegistries().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getRegistries().getUrls();
@ -91,7 +98,7 @@ public class RemoteFetcher {
}
@Cacheable("services")
public List<Map<String, Object>> getServices(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getServices(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getServices().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getServices().getUrls();
@ -100,7 +107,7 @@ public class RemoteFetcher {
}
@Cacheable("researchers")
public List<Map<String, Object>> getResearchers(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getResearchers(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getResearchers().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getResearchers().getUrls();
@ -118,7 +125,7 @@ public class RemoteFetcher {
}*/
@Cacheable("externalDatasets")
public List<Map<String, Object>> getDatasets(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getDatasets(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getDatasets().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getDatasets().getUrls();
@ -127,7 +134,7 @@ public class RemoteFetcher {
}
@Cacheable("licenses")
public List<Map<String, Object>> getlicenses(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
public List<Map<String, String>> getlicenses(ExternalUrlCriteria externalUrlCriteria, String key) throws NoURLFound, HugeResultSet {
List<UrlConfiguration> urlConfigs =
key != null && !key.isEmpty() ? configLoader.getExternalUrls().getLicenses().getUrls().stream().filter(item -> item.getKey().equals(key)).collect(Collectors.toList())
: configLoader.getExternalUrls().getLicenses().getUrls();
@ -136,9 +143,9 @@ public class RemoteFetcher {
}
private List<Map<String, Object>> getAll(List<UrlConfiguration> urlConfigs, FetchStrategy fetchStrategy, ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
private List<Map<String, String>> getAll(List<UrlConfiguration> urlConfigs, FetchStrategy fetchStrategy, ExternalUrlCriteria externalUrlCriteria) throws NoURLFound, HugeResultSet {
List<Map<String, Object>> results = new LinkedList<>();
List<Map<String, String>> results = new LinkedList<>();
if (urlConfigs == null || urlConfigs.isEmpty()) return results;
// throw new NoURLFound("No Repository urls found in configuration");
@ -183,11 +190,10 @@ public class RemoteFetcher {
if (funderId.toCharArray()[0] == ':') {
funderId = externalUrlCriteria.getFunderId();
}
try {
funderId = URLEncoder.encode(funderId, "UTF-8");
} catch (UnsupportedEncodingException e) {
logger.error(e.getMessage(), e);
}
/*
try { funderId = URLEncoder.encode(funderId, "UTF-8"); } catch
(UnsupportedEncodingException e) { logger.error(e.getMessage(), e); }
*/
completedPath = completedPath.replace("{funderId}", funderId);
}
if (externalUrlCriteria.getPage() != null) {
@ -217,7 +223,7 @@ public class RemoteFetcher {
return completedPath;
}
private List<Map<String, Object>> getAllResultsFromUrl(String path, FetchStrategy fetchStrategy, final DataUrlConfiguration jsonDataPath, final String jsonPaginationPath, ExternalUrlCriteria externalUrlCriteria, String tag, String key, String contentType, String firstPage) throws HugeResultSet {
private List<Map<String, String>> getAllResultsFromUrl(String path, FetchStrategy fetchStrategy, final DataUrlConfiguration jsonDataPath, final String jsonPaginationPath, ExternalUrlCriteria externalUrlCriteria, String tag, String key, String contentType, String firstPage) throws HugeResultSet {
Set<Integer> pages = new HashSet<>();
String replacedPath = replaceCriteriaOnUrl(path, externalUrlCriteria, firstPage);
@ -250,21 +256,28 @@ public class RemoteFetcher {
private Results getResultsFromUrl(String urlString, DataUrlConfiguration jsonDataPath, String jsonPaginationPath, String contentType) {
try {
URL url = new URL(urlString.replace(" ", "%20"));
HttpURLConnection con = (HttpURLConnection) url.openConnection();
con.setRequestMethod("GET");
RestTemplate restTemplate = new RestTemplate();
HttpHeaders headers = new HttpHeaders();
HttpEntity<String> entity;
ResponseEntity<String> response;
/*
* URL url = new URL(urlString.replaceAll(" ", "%20"));
*
* HttpURLConnection con = (HttpURLConnection) url.openConnection();
* con.setRequestMethod("GET");
*/
if (contentType != null && !contentType.isEmpty()) {
con.setRequestProperty("Accept", contentType);
headers.setAccept(Collections.singletonList(MediaType.valueOf(contentType)));
}
entity = new HttpEntity<>("parameters", headers);
int responseCode = con.getResponseCode();
if (responseCode == HttpURLConnection.HTTP_OK) { // success
response = restTemplate.exchange(urlString, HttpMethod.GET, entity, String.class);
if (response.getStatusCode() == HttpStatus.OK) { // success
//do here all the parsing
Results results = new Results();
if (con.getHeaderField("Content-Type").contains("json")) {
DocumentContext jsonContext = JsonPath.parse(con.getInputStream());
if (response.getHeaders().get("Content-Type").get(0).contains("json")) {
DocumentContext jsonContext = JsonPath.parse(response.getBody());
if (jsonDataPath.getFieldsUrlConfiguration().getSource() != null) {
results = new Results(jsonContext.read(jsonDataPath.getPath()
@ -277,25 +290,32 @@ public class RemoteFetcher {
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getName()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getId() + "]"),
new HashMap<>(1, 1));
List<Map<String, Object>> fixedResults = results.getResults().stream().map(item -> {
String id = jsonDataPath.getFieldsUrlConfiguration().getId().replace("'", "");
String name = jsonDataPath.getFieldsUrlConfiguration().getName().replace("'", "");
if (! (item.get(id) instanceof String)) {
if (item.get(id) instanceof LinkedHashMap) {
item.put(id, ((Map)item.get(id)).get("content"));
List<Map<String, String>> fixedResults = results.getResults().stream().map(item -> {
for (int i = 0; i < 2; i++) {
String id;
if (i == 0) {
id = jsonDataPath.getFieldsUrlConfiguration().getId().replace("'", "");
} else {
Object obj = item.get(id);
JSONArray jarr = (JSONArray) obj;
item.put(id, jarr.get(0).toString());
id = jsonDataPath.getFieldsUrlConfiguration().getName().replace("'", "");
}
}
if (! (item.get(name) instanceof String)) {
if (item.get(name) instanceof LinkedHashMap) {
item.put(name, ((Map)item.get(name)).get("content"));
} else {
Object obj = item.get(name);
JSONArray jarr = (JSONArray) obj;
item.put(name, ((Map)jarr.get(1)).get("content"));
if (!(item.get(id) instanceof String)) {
Object obj = item.get(id);
if (obj instanceof JSONArray) {
JSONArray jarr = (JSONArray) obj;
if (jarr.get(0) instanceof String) {
item.put(id, jarr.get(0).toString());
} else {
for (int j = 0; j < jarr.size(); j++) {
mapToMap(id, (Map<String, String>)jarr.get(j), item, i == 1);
}
}
} else {
if (obj instanceof Map) {
mapToMap(id, (Map<String, String>) obj, item, i == 1);
} else if (obj != null){
item.put(id, obj.toString());
}
}
}
}
return item;
@ -308,10 +328,10 @@ public class RemoteFetcher {
+ "," + jsonDataPath.getFieldsUrlConfiguration().getHost() + "]"),
new HashMap<>(1, 1));
List<Map<String, Object>> multiResults = results.results.stream().map(result -> {
List<Map<String, String>> multiResults = results.results.stream().map(result -> {
ExternalUrlCriteria externalUrlCriteria = new ExternalUrlCriteria();
externalUrlCriteria.setPath((String) result.get("path"));
externalUrlCriteria.setHost((String) result.get("host"));
externalUrlCriteria.setPath(result.get("path"));
externalUrlCriteria.setHost(result.get("host"));
String replacedPath = replaceCriteriaOnUrl(jsonDataPath.getUrlConfiguration().getUrl(), externalUrlCriteria, jsonDataPath.getUrlConfiguration().getFirstpage());
return getResultsFromUrl(replacedPath, jsonDataPath.getUrlConfiguration().getData(), jsonDataPath.getUrlConfiguration().getData().getPath(), jsonDataPath.getUrlConfiguration().getContentType());
}).filter(Objects::nonNull).map(results1 -> results1.results.get(0)).collect(Collectors.toList());
@ -320,9 +340,9 @@ public class RemoteFetcher {
List<Map<String, Object>> tempRes = jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getId() + "," + jsonDataPath.getFieldsUrlConfiguration().getName()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getTypes() + "," + jsonDataPath.getFieldsUrlConfiguration().getUri() + "]");
List<Map<String, Object>> finalRes = new ArrayList<>();
List<Map<String, String>> finalRes = new ArrayList<>();
tempRes.forEach(map -> {
Map<String, Object> resMap = new HashMap<>();
Map<String, String> resMap = new HashMap<>();
map.forEach((key, value) -> {
if (key.equals(jsonDataPath.getFieldsUrlConfiguration().getTypes().substring(1, jsonDataPath.getFieldsUrlConfiguration().getTypes().length() - 1))) {
resMap.put("tags", ((JSONArray) value).toJSONString());
@ -338,6 +358,17 @@ public class RemoteFetcher {
results = new Results(finalRes,
new HashMap<>(1, 1));
} else if (jsonDataPath.getFieldsUrlConfiguration().getFirstName() != null) {
results = new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getId() + "," + jsonDataPath.getFieldsUrlConfiguration().getFirstName()
+ "," + jsonDataPath.getFieldsUrlConfiguration().getLastName() + "]"),
new HashMap<>(1, 1));
results.getResults().stream().forEach(entry -> {
String name = entry.get(jsonDataPath.getFieldsUrlConfiguration().getFirstName().replace("'", "")) + " " + entry.get(jsonDataPath.getFieldsUrlConfiguration().getLastName().replace("'", ""));
entry.put("name", name);
entry.remove(jsonDataPath.getFieldsUrlConfiguration().getFirstName().replace("'", ""));
entry.remove(jsonDataPath.getFieldsUrlConfiguration().getLastName().replace("'", ""));
});
} else {
results = new Results(jsonContext.read(jsonDataPath.getPath()
+ "[" + jsonDataPath.getFieldsUrlConfiguration().getName() + "," + jsonDataPath.getFieldsUrlConfiguration().getDescription()
@ -347,17 +378,18 @@ public class RemoteFetcher {
results.results = results.results.stream().map(e -> e.entrySet().stream().collect(Collectors.toMap(x -> this.transformKey(jsonDataPath,x.getKey()), Map.Entry::getValue)))
.collect(Collectors.toList());
}
else if (con.getHeaderField("Content-Type").contains("xml")) {
else if (response.getHeaders().get("Content-Type").get(0).contains("xml")) {
Class<?> aClass = Class.forName(jsonDataPath.getParseClass());
JAXBContext jaxbContext = JAXBContext.newInstance(aClass);
Unmarshaller unmarshaller = jaxbContext.createUnmarshaller();
Object data = unmarshaller.unmarshal(con.getInputStream());
StringReader stringReader = new StringReader(response.getBody());
Object data = unmarshaller.unmarshal(stringReader);
Method reader = null;
if (jsonDataPath.getParseField() != null && !jsonDataPath.getParseField().isEmpty()) {
reader = new PropertyDescriptor(jsonDataPath.getParseField(), aClass).getReadMethod();
}
ObjectMapper objectMapper = new ObjectMapper();
List<Map<String, Object>> values = new ArrayList<>();
List<Map<String, String>> values = new ArrayList<>();
int max = 1;
if (reader != null) {
Object invokedField = reader.invoke(data);
@ -377,10 +409,10 @@ public class RemoteFetcher {
} else {
value = data;
}
Map<String, Object> map = objectMapper.convertValue(value, Map.class);
Map<String, String> map = objectMapper.convertValue(value, Map.class);
if (jsonDataPath.getMergedFields() != null && !jsonDataPath.getMergedFields().isEmpty() && jsonDataPath.getMergedFieldName() != null && !jsonDataPath.getMergedFieldName().isEmpty()) {
Map<String, Object> finalMap = new HashMap<>();
for (Map.Entry<String, Object> entry : map.entrySet()) {
Map<String, String> finalMap = new HashMap<>();
for (Map.Entry<String, String> entry : map.entrySet()) {
if (jsonDataPath.getMergedFields().contains(entry.getKey())) {
if (!finalMap.containsKey(jsonDataPath.getMergedFieldName())) {
finalMap.put(jsonDataPath.getMergedFieldName(), entry.getValue());
@ -401,13 +433,7 @@ public class RemoteFetcher {
return results;
}
} catch (MalformedURLException e1) {
logger.error(e1.getMessage(), e1);
} //maybe print smth...
catch (IOException e2) {
logger.error(e2.getMessage(), e2);
} //maybe print smth...
catch (Exception exception) {
} catch (Exception exception) {
logger.error(exception.getMessage(), exception);
} //maybe print smth...
finally {
@ -416,8 +442,8 @@ public class RemoteFetcher {
return null;
}
private List<Map<String, Object>> getAllResultsFromMockUpJson(String path, String query) {
List<Map<String, Object>> internalResults;
private List<Map<String, String>> getAllResultsFromMockUpJson(String path, String query) {
List<Map<String, String>> internalResults;
try {
String filePath = Paths.get(path).toUri().toURL().toString();
ObjectMapper mapper = new ObjectMapper();
@ -429,14 +455,14 @@ public class RemoteFetcher {
}
}
private List<Map<String, Object>> searchListMap(List<Map<String, Object>> internalResults, String query) {
List<Map<String, Object>> list = new LinkedList<>();
for (Map<String, Object> map : internalResults)
private List<Map<String, String>> searchListMap(List<Map<String, String>> internalResults, String query) {
List<Map<String, String>> list = new LinkedList<>();
for (Map<String, String> map : internalResults)
{
if (map.get("name") != null && ((String)map.get("name")).toUpperCase().contains(query.toUpperCase())) {
if (map.get("name") != null && map.get("name").toUpperCase().contains(query.toUpperCase())) {
list.add(map);
}
if (map.get("label") != null && ((String)map.get("label")).toUpperCase().contains(query.toUpperCase())) {
if (map.get("label") != null && map.get("label").toUpperCase().contains(query.toUpperCase())) {
list.add(map);
}
}
@ -457,7 +483,7 @@ public class RemoteFetcher {
static class Results {
List<Map<String, Object>> results;
List<Map<String, String>> results;
Map<String, Integer> pagination;
Results() {
@ -465,16 +491,16 @@ public class RemoteFetcher {
this.pagination = new HashMap<>();
}
Results(List<Map<String, Object>> results, Map<String, Integer> pagination) {
Results(List<Map<String, String>> results, Map<String, Integer> pagination) {
this.results = results;
this.pagination = pagination;
}
List<Map<String, Object>> getResults() {
List<Map<String, String>> getResults() {
return results;
}
public void setResults(List<Map<String, Object>> results) {
public void setResults(List<Map<String, String>> results) {
this.results = results;
}
@ -486,4 +512,18 @@ public class RemoteFetcher {
this.pagination = pagination;
}
}
private void mapToMap(String key, Map<String, String> source, Map<String, String> destination, boolean isTitle) {
if (source != null) {
String content = source.get("content");
if (isTitle) {
String classId = source.get("classid");
if (classId.equals("main title")) {
destination.put(key, content);
}
} else {
destination.put(key, content);
}
}
}
}

5
dmp-backend/web/src/main/java/eu/eudat/logic/security/CustomAuthenticationProvider.java
View File

@ -4,6 +4,7 @@ import eu.eudat.exceptions.security.NonValidTokenException;
import eu.eudat.exceptions.security.NullEmailException;
import eu.eudat.exceptions.security.UnauthorisedException;
import eu.eudat.models.data.login.LoginInfo;
import eu.eudat.models.data.principal.PrincipalModel;
import eu.eudat.models.data.security.Principal;
import eu.eudat.logic.security.validators.TokenValidatorFactory;
import org.slf4j.Logger;
@ -22,11 +23,11 @@ public class CustomAuthenticationProvider {
@Autowired
private TokenValidatorFactory tokenValidatorFactory;
public Principal authenticate(LoginInfo credentials) throws GeneralSecurityException, NullEmailException {
public PrincipalModel authenticate(LoginInfo credentials) throws GeneralSecurityException, NullEmailException {
String token = credentials.getTicket();
try {
Principal principal = this.tokenValidatorFactory.getProvider(credentials.getProvider()).validateToken(credentials);
return principal;
return PrincipalModel.fromEntity(principal);
} catch (NonValidTokenException e) {
logger.error("Could not validate a user by his token! Reason: " + e.getMessage(), e);
throw new UnauthorisedException("Token validation failed - Not a valid token");

6
dmp-backend/web/src/main/java/eu/eudat/logic/services/operations/authentication/AbstractAuthenticationService.java
View File

@ -20,7 +20,9 @@ import org.slf4j.LoggerFactory;
import org.springframework.core.env.Environment;
import org.springframework.transaction.annotation.Transactional;
import java.sql.Timestamp;
import java.time.Instant;
import java.time.LocalDateTime;
import java.util.*;
public abstract class AbstractAuthenticationService implements AuthenticationService {
@ -98,7 +100,7 @@ public abstract class AbstractAuthenticationService implements AuthenticationSer
UserToken userToken = this.apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserTokenBuilder.class)
.issuedAt(new Date()).user(credential.getUserInfo())
.token(UUID.randomUUID()).expiresAt(addADay(new Date()))
.token(UUID.randomUUID()).expiresAt(Timestamp.valueOf(LocalDateTime.now().plusDays(1)))
.build();
userToken = apiContext.getOperationsContext().getDatabaseRepository().getUserTokenDao().createOrUpdate(userToken);
@ -187,7 +189,7 @@ public abstract class AbstractAuthenticationService implements AuthenticationSer
UserToken userToken = this.apiContext.getOperationsContext().getBuilderFactory().getBuilder(UserTokenBuilder.class)
.token(UUID.randomUUID()).user(userInfo)
.expiresAt(addADay(new Date())).issuedAt(new Date())
.expiresAt(Timestamp.valueOf(LocalDateTime.now().plusDays(1))).issuedAt(new Date())
.build();
apiContext.getOperationsContext().getDatabaseRepository().getUserTokenDao().createOrUpdate(userToken);

4
dmp-backend/web/src/main/java/eu/eudat/logic/services/operations/authentication/NonVerifiedUserEmailAuthenticationService.java
View File

@ -78,7 +78,9 @@ public class NonVerifiedUserEmailAuthenticationService extends AbstractAuthentic
}
Principal principal = this.apiContext.getOperationsContext().getBuilderFactory().getBuilder(PrincipalBuilder.class)
.id(user.getId()).token(token.getToken())
.expiresAt(token.getExpiresAt()).name(user.getName())
.expiresAt(token.getExpiresAt())
.name(user.getName())
.email(user.getEmail())
.avatarUrl(avatarUrl)
.culture(culture)
.language(language)

4
dmp-backend/web/src/main/java/eu/eudat/logic/services/operations/authentication/VerifiedUserAuthenticationService.java
View File

@ -87,7 +87,9 @@ public class VerifiedUserAuthenticationService extends AbstractAuthenticationSer
}
Principal principal = this.apiContext.getOperationsContext().getBuilderFactory().getBuilder(PrincipalBuilder.class)
.id(user.getId()).token(token.getToken())
.expiresAt(token.getExpiresAt()).name(user.getName())
.expiresAt(token.getExpiresAt())
.name(user.getName())
.email(user.getEmail())
.avatarUrl(avatarUrl)
.culture(culture)
.language(language)

4
dmp-backend/web/src/main/java/eu/eudat/logic/services/utilities/InvitationService.java
View File

@ -16,7 +16,7 @@ public interface InvitationService {
void assignToDmp(DMPDao dmpDao, eu.eudat.data.entities.UserDMP user, DMP dmp);
void createInvitations(InvitationDao invitationDao, MailService mailService, List<eu.eudat.data.entities.UserInfo> users, DMP dmp, eu.eudat.data.entities.UserInfo creator) throws MessagingException;
void createInvitations(InvitationDao invitationDao, MailService mailService, List<eu.eudat.data.entities.UserInfo> users, DMP dmp, Integer role, eu.eudat.data.entities.UserInfo creator) throws MessagingException;
CompletableFuture sendInvitationAsync(DMP dmp, Invitation invitation, String recipient, MailService mailService) throws MessagingException;
CompletableFuture sendInvitationAsync(DMP dmp, Invitation invitation, String recipient, MailService mailService, Integer role) throws MessagingException;
}

27
dmp-backend/web/src/main/java/eu/eudat/logic/services/utilities/InvitationServiceImpl.java
View File

@ -5,6 +5,8 @@ import eu.eudat.data.dao.entities.DMPDao;
import eu.eudat.data.dao.entities.InvitationDao;
import eu.eudat.data.entities.DMP;
import eu.eudat.data.entities.Invitation;
import eu.eudat.data.entities.UserDMP;
import eu.eudat.models.data.invitation.Properties;
import eu.eudat.models.data.mail.SimpleMail;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
@ -13,6 +15,9 @@ import org.springframework.core.env.Environment;
import org.springframework.stereotype.Service;
import javax.mail.MessagingException;
import javax.xml.bind.JAXBContext;
import javax.xml.bind.Marshaller;
import java.io.StringWriter;
import java.util.List;
import java.util.UUID;
import java.util.concurrent.CompletableFuture;
@ -46,7 +51,7 @@ public class InvitationServiceImpl implements InvitationService {
}
@Override
public void createInvitations(InvitationDao invitationDao, MailService mailService, List<eu.eudat.data.entities.UserInfo> users, DMP dmp, eu.eudat.data.entities.UserInfo creator) throws MessagingException {
public void createInvitations(InvitationDao invitationDao, MailService mailService, List<eu.eudat.data.entities.UserInfo> users, DMP dmp, Integer role, eu.eudat.data.entities.UserInfo creator) throws MessagingException {
for (eu.eudat.data.entities.UserInfo userInfo : users) {
Invitation invitation = new Invitation();
invitation.setDmp(dmp);
@ -54,17 +59,28 @@ public class InvitationServiceImpl implements InvitationService {
invitation.setUser(creator);
invitation.setToken(UUID.randomUUID());
invitation.setAcceptedInvitation(false);
Properties properties = new Properties();
properties.setRole(role);
try {
JAXBContext context = JAXBContext.newInstance(Properties.class);
Marshaller marshaller = context.createMarshaller();
StringWriter propertyWriter = new StringWriter();
marshaller.marshal(properties, propertyWriter);
invitation.setProperties(propertyWriter.toString());
}catch (Exception e) {
logger.error(e.getMessage(), e);
}
invitationDao.createOrUpdate(invitation);
sendInvitationAsync(dmp, invitation, userInfo.getName(), mailService);
sendInvitationAsync(dmp, invitation, userInfo.getName(), mailService, role);
}
}
@Override
public CompletableFuture sendInvitationAsync(DMP dmp, Invitation invitation, String recipient, MailService mailService) {
public CompletableFuture sendInvitationAsync(DMP dmp, Invitation invitation, String recipient, MailService mailService, Integer role) {
return CompletableFuture.runAsync(() -> {
SimpleMail mail = new SimpleMail();
mail.setSubject(createSubject(dmp, mailService.getMailTemplateSubject()));
mail.setContent(createContent(invitation.getId(), dmp, recipient, mailService.getMailTemplateContent("classpath:templates/email/email.html")));
mail.setContent(createContent(invitation.getId(), dmp, recipient, mailService.getMailTemplateContent("classpath:templates/email/email.html"), role));
mail.setTo(invitation.getInvitationEmail());
try {
mailService.sendSimpleMail(mail);
@ -79,11 +95,12 @@ public class InvitationServiceImpl implements InvitationService {
return subject;
}
private String createContent(UUID invitationID, DMP dmp, String recipient, String templateContent) {
private String createContent(UUID invitationID, DMP dmp, String recipient, String templateContent, Integer role) {
String content = templateContent.replace("{dmpname}", dmp.getLabel());
content = content.replace("{invitationID}", invitationID.toString());
content = content.replace("{recipient}", recipient);
content = content.replace("{host}", this.environment.getProperty("dmp.domain"));
content = content.replace("{dmprole}", UserDMP.UserDMPRoles.fromInteger(role).name());
return content;
}

1
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/documents/xml/datasetProfileXml/ExportXmlBuilderDatasetProfile.java
View File

@ -205,6 +205,7 @@ public class ExportXmlBuilderDatasetProfile {
WordListData wordListDataObject = (WordListData) field.getData();
dataOut.setAttribute("label", wordListDataObject.getLabel());
dataOut.setAttribute("type", wordListDataObject.getType());
dataOut.setAttribute("multiList", wordListDataObject.getMultiList().toString());
Element options = element.createElement("options");
wordListDataObject.getOptions().forEach(optionChildFor -> {
Element optionChild = element.createElement("option");

13
dmp-backend/web/src/main/java/eu/eudat/logic/utilities/json/JavaToJson.java Normal file
View File

@ -0,0 +1,13 @@
package eu.eudat.logic.utilities.json;
public class JavaToJson {
public static String objectStringToJson(String object) {
String result = object.replaceAll("=", "\":\"")
.replaceAll("\\{", "{\"")
.replaceAll(", ", "\", \"")
.replaceAll("}", "\"}" ).
replaceAll("}\", \"\\{", "}, {");
return result;
}
}

29
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/AutoCompleteData.java
View File

@ -129,6 +129,9 @@ public class AutoCompleteData extends ComboBoxData<AutoCompleteData> {
this.multiAutoComplete = (Boolean) ((Map<Boolean, Object>) data).get("multiAutoComplete");
List<Map<String, Object>> dataList = (List<Map<String, Object>>) ((Map<String, Object>) data).get("autocompleteSingle");
if (dataList == null) {
dataList = (List<Map<String, Object>>) ((Map<String, Object>) data).get("autoCompleteSingleDataList");
}
this.autoCompleteSingleDataList = new ArrayList<>();
@ -174,19 +177,21 @@ public class AutoCompleteData extends ComboBoxData<AutoCompleteData> {
List<Map<String, Object>> autoCompletes = new ArrayList<>();
NodeList autoCompleteSingles = item.getChildNodes();
for (int i = 0; i < autoCompleteSingles.getLength(); i++) {
if (autoCompleteSingles.item(i) instanceof Element && !((Element) autoCompleteSingles.item(i)).getTagName().equals("option")) {
Element node = (Element) autoCompleteSingles.item(i);
if (!node.hasChildNodes()) {
node.appendChild(node);
}
if (autoCompleteSingles.item(i) instanceof Element) {
if (!((Element) autoCompleteSingles.item(i)).getTagName().equals("option")) {
Element node = (Element) autoCompleteSingles.item(i);
if (!node.hasChildNodes()) {
node.appendChild(node);
}
autoCompletes.add(singleToMap(node));
} else if (((Element) autoCompleteSingles.item(i)).getTagName().equals("option")) {
Element node = item.getOwnerDocument().createElement("autocompleteSingle");
node.appendChild(autoCompleteSingles.item(i));
node.setAttribute("url", item.getAttribute("url"));
node.setAttribute("optionsRoot", item.getAttribute("optionsRoot"));
autoCompletes.add(singleToMap(node));
autoCompletes.add(singleToMap(node));
} else {
Element node = item.getOwnerDocument().createElement("autocompleteSingle");
node.appendChild(autoCompleteSingles.item(i));
node.setAttribute("url", item.getAttribute("url"));
node.setAttribute("optionsRoot", item.getAttribute("optionsRoot"));
autoCompletes.add(singleToMap(node));
}
}
}
dataMap.put("autocompleteSingle", autoCompletes);

16
dmp-backend/web/src/main/java/eu/eudat/models/data/components/commons/datafield/WordListData.java
View File

@ -12,6 +12,7 @@ import java.util.Map;
public class WordListData extends ComboBoxData<WordListData> {
private List<Option> options;
private Boolean multiList;
public List<Option> getOptions() {
return options;
@ -21,10 +22,18 @@ public class WordListData extends ComboBoxData<WordListData> {
this.options = options;
}
public Boolean getMultiList() {
return multiList;
}
public void setMultiList(Boolean multiList) {
this.multiList = multiList;
}
@Override
public Element toXml(Document doc) {
Element root = super.toXml(doc);
root.setAttribute("multiList", this.multiList != null ? this.multiList.toString() : "false");
Element element = doc.createElement("options");
if (this.options != null) {
for (Option option : this.options) {
@ -50,6 +59,8 @@ public class WordListData extends ComboBoxData<WordListData> {
}
}
}
Boolean temp = Boolean.parseBoolean(item.getAttribute("multiList"));
this.multiList = temp != null ? temp : false;
return this;
}
@ -57,7 +68,6 @@ public class WordListData extends ComboBoxData<WordListData> {
public WordListData fromData(Object data) {
super.fromData(data);
this.options = new LinkedList();
if (data != null) {
List<Map<String, String>> options = ((Map<String, List<Map<String, String>>>) data).get("options");
if (options != null) {
@ -68,8 +78,9 @@ public class WordListData extends ComboBoxData<WordListData> {
this.options.add(newOption);
}
}
Object multiList1 = ((Map<String, Object>) data).get("multiList");
this.multiList = multiList1 instanceof String ? Boolean.parseBoolean((String) multiList1) : (Boolean) multiList1;
}
return this;
}
@ -82,6 +93,7 @@ public class WordListData extends ComboBoxData<WordListData> {
@Override
public Map<String, Object> toMap(Element item) {
HashMap dataMap = new HashMap();
dataMap.put("multiList", item != null ? item.getAttribute("multiList") : "false");
dataMap.put("label", item != null ? item.getAttribute("label") : "");
dataMap.put("type", item != null ? item.getAttribute("type") : "wordlist");
Element optionsElement = (Element) item.getElementsByTagName("options").item(0);

184
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentActivityModel.java Normal file
View File

@ -0,0 +1,184 @@
package eu.eudat.models.data.dashboard.recent.model;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import eu.eudat.queryable.queryableentity.DataEntity;
import java.util.Date;
import java.util.List;
public abstract class RecentActivityModel<T extends DataEntity, S extends DataModel> implements DataModel<T, S> {
private String id;
private String title;
private String description;
private Date created;
private Date modified;
private int status;
private int version;
private String grant;
private String grantAbbreviation;
private String grantId;
private Date finalizedAt;
private Date publishedAt;
private DatasetProfileOverviewModel profile;
private int type;
private List<UserInfoListingModel> users;
private Boolean isPublic;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public Date getCreated() {
return created;
}
public void setCreated(Date created) {
this.created = created;
}
public Date getModified() {
return modified;
}
public void setModified(Date modified) {
this.modified = modified;
}
public int getStatus() {
return status;
}
public void setStatus(int status) {
this.status = status;
}
public int getVersion() {
return version;
}
public void setVersion(int version) {
this.version = version;
}
public String getGrant() {
return grant;
}
public void setGrant(String grant) {
this.grant = grant;
}
public String getGrantAbbreviation() {
return grantAbbreviation;
}
public void setGrantAbbreviation(String grantAbbreviation) {
this.grantAbbreviation = grantAbbreviation;
}
public String getGrantId() {
return grantId;
}
public void setGrantId(String grantId) {
this.grantId = grantId;
}
public Date getFinalizedAt() {
return finalizedAt;
}
public void setFinalizedAt(Date finalizedAt) {
this.finalizedAt = finalizedAt;
}
public Date getPublishedAt() {
return publishedAt;
}
public void setPublishedAt(Date publishedAt) {
this.publishedAt = publishedAt;
}
public DatasetProfileOverviewModel getProfile() {
return profile;
}
public void setProfile(DatasetProfileOverviewModel profile) {
this.profile = profile;
}
public int getType() {
return type;
}
public void setType(int type) {
this.type = type;
}
public List<UserInfoListingModel> getUsers() {
return users;
}
public void setUsers(List<UserInfoListingModel> users) {
this.users = users;
}
public Boolean getPublic() {
return isPublic;
}
public void setPublic(Boolean aPublic) {
isPublic = aPublic;
}
public abstract RecentActivityModel fromEntity(T entity);
public enum RecentActivityType {
DMP(2), DATASET(1);
private final int index;
RecentActivityType(int index) {
this.index = index;
}
public int getIndex() {
return index;
}
public static RecentActivityType fromIndex(int index) {
switch (index) {
case 2:
return DMP;
case 1:
return DATASET;
default:
throw new IllegalArgumentException("Recent Activity Type : \"" + index + "\" is not supported.");
}
}
}
}

121
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentDatasetModel.java Normal file
View File

@ -0,0 +1,121 @@
package eu.eudat.models.data.dashboard.recent.model;
import eu.eudat.data.entities.Dataset;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.dataset.DataRepository;
import eu.eudat.models.data.dataset.Service;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import java.util.Date;
import java.util.stream.Collectors;
public class RecentDatasetModel extends RecentActivityModel<Dataset, RecentDatasetModel> {
private String dmp;
private String dmpId;
private String dataRepositories;
private String registries;
private String services;
public String getDmp() {
return dmp;
}
public void setDmp(String dmp) {
this.dmp = dmp;
}
public String getDmpId() {
return dmpId;
}
public void setDmpId(String dmpId) {
this.dmpId = dmpId;
}
public String getDataRepositories() {
return dataRepositories;
}
public void setDataRepositories(String dataRepositories) {
this.dataRepositories = dataRepositories;
}
public String getRegistries() {
return registries;
}
public void setRegistries(String registries) {
this.registries = registries;
}
public String getServices() {
return services;
}
public void setServices(String services) {
this.services = services;
}
@Override
public RecentActivityModel fromEntity(Dataset entity) {
this.setType(RecentActivityType.DATASET.getIndex());
this.setId(entity.getId().toString());
this.setTitle(entity.getLabel());
this.setDescription(entity.getDescription());
this.setCreated(entity.getCreated());
this.setModified(entity.getModified());
this.setStatus(entity.getStatus());
this.setVersion(entity.getDmp() != null ? entity.getDmp().getVersion(): 0);
this.setFinalizedAt(entity.getFinalizedAt());
this.setGrantAbbreviation(entity.getDmp() != null ? entity.getDmp().getGrant().getAbbreviation() : "");
this.setPublishedAt(entity.getDmp() != null ? entity.getDmp().getPublishedAt() : new Date());
this.setGrantId(entity.getDmp() != null ? entity.getDmp().getGrant().getId().toString() : "");
this.setProfile(entity.getProfile() != null ? new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()): null);
this.setGrant(entity.getDmp() != null ? entity.getDmp().getGrant().getLabel() : "");
this.setDataRepositories(entity.getDatasetDataRepositories() != null && !entity.getDatasetDataRepositories().isEmpty()? LabelBuilder.getLabel(entity.getDatasetDataRepositories().stream().map(item -> new DataRepository().fromDataModel(item.getDataRepository())).collect(Collectors.toList())) : "");
this.setDmp( entity.getDmp() != null ? entity.getDmp().getLabel() : "");
this.setDmpId(entity.getDmp() != null ? entity.getDmp().getId().toString() : "");
this.setRegistries(LabelBuilder.getLabel(entity.getRegistries().stream().map(item -> new eu.eudat.models.data.dataset.Registry().fromDataModel(item)).collect(Collectors.toList())));
this.setServices(LabelBuilder.getLabel(entity.getServices().stream().map(item -> new Service().fromDataModel(item.getService())).collect(Collectors.toList())));
this.setPublic(entity.getDmp().isPublic());
this.setUsers(entity.getDmp().getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList()));
return this;
}
public RecentDatasetModel fromDmpEntity(Dataset entity) {
this.setType(RecentActivityType.DATASET.getIndex());
this.setId(entity.getId().toString());
this.setTitle(entity.getLabel());
this.setDescription(entity.getDescription());
this.setCreated(entity.getCreated());
this.setModified(entity.getModified());
this.setStatus(entity.getStatus());
this.setVersion(entity.getDmp() != null ? entity.getDmp().getVersion(): 0);
this.setFinalizedAt(entity.getFinalizedAt());
this.setGrantAbbreviation(entity.getDmp() != null ? entity.getDmp().getGrant().getAbbreviation() : "");
this.setPublishedAt(entity.getDmp() != null ? entity.getDmp().getPublishedAt() : new Date());
this.setGrantId(entity.getDmp() != null ? entity.getDmp().getGrant().getId().toString() : "");
this.setProfile(entity.getProfile() != null ? new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()) : null);
this.setGrant(entity.getDmp() != null ? entity.getDmp().getGrant().getLabel() : "");
this.setDmp( entity.getDmp() != null ? entity.getDmp().getLabel() : "");
this.setDmpId(entity.getDmp() != null ? entity.getDmp().getId().toString() : "");
return this;
}
@Override
public RecentDatasetModel fromDataModel(Dataset entity) {
return (RecentDatasetModel) this.fromEntity(entity);
}
@Override
public Dataset toDataModel() throws Exception {
return null;
}
@Override
public String getHint() {
return "recentDatasetModel";
}
}

114
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/model/RecentDmpModel.java Normal file
View File

@ -0,0 +1,114 @@
package eu.eudat.models.data.dashboard.recent.model;
import eu.eudat.data.entities.DMP;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.dmp.AssociatedProfile;
import eu.eudat.models.data.dmp.Organisation;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import eu.eudat.models.data.urls.DatasetUrlListing;
import javax.transaction.Transactional;
import java.util.List;
import java.util.Map;
import java.util.UUID;
import java.util.stream.Collectors;
public class RecentDmpModel extends RecentActivityModel<DMP, RecentDmpModel> {
private String doi;
private Map<String, Object> extraProperties;
private List<DatasetUrlListing> datasets;
private List<AssociatedProfile> associatedProfiles;
private String organisations;
private UUID groupId;
public String getDoi() {
return doi;
}
public void setDoi(String doi) {
this.doi = doi;
}
public Map<String, Object> getExtraProperties() {
return extraProperties;
}
public void setExtraProperties(Map<String, Object> extraProperties) {
this.extraProperties = extraProperties;
}
public List<DatasetUrlListing> getDatasets() {
return datasets;
}
public void setDatasets(List<DatasetUrlListing> datasets) {
this.datasets = datasets;
}
public List<AssociatedProfile> getAssociatedProfiles() {
return associatedProfiles;
}
public void setAssociatedProfiles(List<AssociatedProfile> associatedProfiles) {
this.associatedProfiles = associatedProfiles;
}
public String getOrganisations() {
return organisations;
}
public void setOrganisations(String organisations) {
this.organisations = organisations;
}
public UUID getGroupId() {
return groupId;
}
public void setGroupId(UUID groupId) {
this.groupId = groupId;
}
@Override
@Transactional
public RecentActivityModel fromEntity(DMP entity) {
this.setType(RecentActivityType.DMP.getIndex());
this.setId(entity.getId().toString());
this.setTitle(entity.getLabel());
this.setDescription(entity.getDescription());
this.setCreated(entity.getCreated());
this.setModified(entity.getModified());
this.setStatus(entity.getStatus());
this.setVersion(entity.getVersion());
//this.datasets = entity.getDataset().stream().map(dataset -> new RecentDatasetModel().fromDmpEntity(dataset)).collect(Collectors.toList());
this.datasets = entity.getDataset().stream().map(dataset -> new DatasetUrlListing().fromDataModel(dataset)).collect(Collectors.toList());
this.associatedProfiles = entity.getAssociatedDmps().stream().map(item -> new AssociatedProfile().fromData(item)).collect(Collectors.toList());
this.setFinalizedAt(entity.getFinalizedAt());
this.setGrant(entity.getGrant().getLabel());
this.setGrantAbbreviation(entity.getGrant().getAbbreviation());
this.setGrantId(entity.getGrant().getId().toString());
this.groupId = entity.getGroupId();
this.setPublic(entity.isPublic());
this.organisations = LabelBuilder.getLabel(entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList()));
//if (entity.getProfile() != null) this.setProfile(new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()));
this.setPublishedAt(entity.getPublishedAt());
this.setUsers(entity.getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList()));
return this;
}
@Override
public RecentDmpModel fromDataModel(DMP entity) {
return (RecentDmpModel) this.fromEntity(entity);
}
@Override
public DMP toDataModel() throws Exception {
return null;
}
@Override
public String getHint() {
return "recentDmpModel";
}
}

52
dmp-backend/web/src/main/java/eu/eudat/models/data/dashboard/recent/tablerequest/RecentActivityTableRequest.java Normal file
View File

@ -0,0 +1,52 @@
package eu.eudat.models.data.dashboard.recent.tablerequest;
import eu.eudat.criteria.RecentActivityCriteria;
import eu.eudat.data.query.definition.helpers.ColumnOrderings;
public class RecentActivityTableRequest {
private ColumnOrderings orderings;
private RecentActivityCriteria criteria;
private int dmpOffset;
private int datasetOffset;
private int length;
public int getDmpOffset() {
return dmpOffset;
}
public void setDmpOffset(int dmpOffset) {
this.dmpOffset = dmpOffset;
}
public int getDatasetOffset() {
return datasetOffset;
}
public void setDatasetOffset(int datasetOffset) {
this.datasetOffset = datasetOffset;
}
public int getLength() {
return length;
}
public void setLength(int length) {
this.length = length;
}
public RecentActivityCriteria getCriteria() {
return criteria;
}
public void setCriteria(RecentActivityCriteria criteria) {
this.criteria = criteria;
}
public ColumnOrderings getOrderings() {
return orderings;
}
public void setOrderings(ColumnOrderings orderings) {
this.orderings = orderings;
}
}

66
dmp-backend/web/src/main/java/eu/eudat/models/data/dataset/DatasetOverviewModel.java
View File

@ -3,8 +3,14 @@ package eu.eudat.models.data.dataset;
import eu.eudat.data.entities.Dataset;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.grant.GrantOverviewModel;
import eu.eudat.models.data.listingmodels.DataManagementPlanOverviewModel;
import eu.eudat.models.data.listingmodels.UserInfoListingModel;
import java.util.Date;
import java.util.List;
import java.util.UUID;
import java.util.stream.Collectors;
public class DatasetOverviewModel implements DataModel<Dataset, DatasetOverviewModel> {
@ -12,6 +18,12 @@ public class DatasetOverviewModel implements DataModel<Dataset, DatasetOverviewM
private String label;
private short status;
private DatasetProfileOverviewModel datasetTemplate;
private List<UserInfoListingModel> users;
private DataManagementPlanOverviewModel dmp;
private GrantOverviewModel grant;
private String description;
private Boolean isPublic;
private Date modified;
public UUID getId() {
return id;
@ -41,12 +53,66 @@ public class DatasetOverviewModel implements DataModel<Dataset, DatasetOverviewM
this.datasetTemplate = datasetTemplate;
}
public List<UserInfoListingModel> getUsers() {
return users;
}
public void setUsers(List<UserInfoListingModel> users) {
this.users = users;
}
public DataManagementPlanOverviewModel getDmp() {
return dmp;
}
public void setDmp(DataManagementPlanOverviewModel dmp) {
this.dmp = dmp;
}
public GrantOverviewModel getGrant() {
return grant;
}
public void setGrant(GrantOverviewModel grant) {
this.grant = grant;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public Boolean getPublic() {
return isPublic;
}
public void setPublic(Boolean aPublic) {
isPublic = aPublic;
}
public Date getModified() {
return modified;
}
public void setModified(Date modified) {
this.modified = modified;
}
@Override
public DatasetOverviewModel fromDataModel(Dataset entity) {
this.id = entity.getId();
this.label = entity.getLabel();
this.status = entity.getStatus();
this.datasetTemplate = new DatasetProfileOverviewModel().fromDataModel(entity.getProfile());
this.users = entity.getDmp().getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList());
this.dmp = new DataManagementPlanOverviewModel().fromDataModel(entity.getDmp());
this.grant = new GrantOverviewModel().fromDataModel(entity.getDmp().getGrant());
this.description = entity.getDescription();
this.isPublic = entity.getDmp().isPublic();
this.modified = entity.getModified();
return this;
}

49
dmp-backend/web/src/main/java/eu/eudat/models/data/datasetwizard/DatasetWizardModel.java
View File

@ -6,7 +6,7 @@ import eu.eudat.models.DataModel;
import eu.eudat.models.data.dataset.DataRepository;
import eu.eudat.models.data.dataset.Registry;
import eu.eudat.models.data.dataset.Service;
import eu.eudat.models.data.datasetprofile.DatasetProfileListingModel;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.dmp.DataManagementPlan;
import eu.eudat.models.data.externaldataset.ExternalDatasetListingModel;
import eu.eudat.models.data.user.composite.PagedDatasetProfile;
@ -32,7 +32,7 @@ public class DatasetWizardModel implements DataModel<Dataset, DatasetWizardModel
private List<DataRepository> dataRepositories;
private List<Tag> tags;
private List<ExternalDatasetListingModel> externalDatasets;
private UUID profile;
private DatasetProfileOverviewModel profile;
private Boolean isProfileLatestVersion;
private Date modified;
@ -120,10 +120,11 @@ public class DatasetWizardModel implements DataModel<Dataset, DatasetWizardModel
this.dataRepositories = dataRepositories;
}
public UUID getProfile() {
public DatasetProfileOverviewModel getProfile() {
return profile;
}
public void setProfile(UUID profile) {
public void setProfile(DatasetProfileOverviewModel profile) {
this.profile = profile;
}
@ -162,7 +163,8 @@ public class DatasetWizardModel implements DataModel<Dataset, DatasetWizardModel
this.status = entity.getStatus();
this.reference = entity.getReference();
this.description = entity.getDescription();
this.profile = entity.getProfile().getId();
this.profile = new DatasetProfileOverviewModel();
this.profile = this.profile.fromDataModel(entity.getProfile());
this.uri = entity.getUri();
this.registries = entity.getRegistries() != null ? entity.getRegistries().stream().map(item -> new Registry().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
this.dataRepositories = entity.getDatasetDataRepositories() != null ? entity.getDatasetDataRepositories().stream().map(item -> {
@ -191,6 +193,41 @@ public class DatasetWizardModel implements DataModel<Dataset, DatasetWizardModel
return this;
}
public DatasetWizardModel fromDataModelNoDmp(Dataset entity) {
this.id = entity.getId();
this.label = entity.getLabel();
this.status = entity.getStatus();
this.reference = entity.getReference();
this.description = entity.getDescription();
this.profile = new DatasetProfileOverviewModel();
this.profile = this.profile.fromDataModel(entity.getProfile());
this.uri = entity.getUri();
this.registries = entity.getRegistries() != null ? entity.getRegistries().stream().map(item -> new Registry().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
this.dataRepositories = entity.getDatasetDataRepositories() != null ? entity.getDatasetDataRepositories().stream().map(item -> {
DataRepository dataRepository = new DataRepository().fromDataModel(item.getDataRepository());
if (item.getData() != null) {
Map<String, Map<String, String>> data = (Map<String, Map<String, String>>) JSONValue.parse(item.getData());
Map<String, String> values = data.get("data");
dataRepository.setInfo(values.get("info"));
}
return dataRepository;
}).collect(Collectors.toList()) : new ArrayList<>();
this.services = entity.getServices() != null ? entity.getServices().stream().map(item -> new Service().fromDataModel(item.getService())).collect(Collectors.toList()) : new ArrayList<>();
this.created = entity.getCreated();
this.externalDatasets = entity.getDatasetExternalDatasets() != null ? entity.getDatasetExternalDatasets().stream().map(item -> {
ExternalDatasetListingModel externalDatasetListingModel = new ExternalDatasetListingModel().fromDataModel(item.getExternalDataset());
if (item.getData() != null) {
Map<String, Map<String, String>> data = (Map<String, Map<String, String>>) JSONValue.parse(item.getData());
Map<String, String> values = data.get("data");
externalDatasetListingModel.setInfo(values.get("info"));
externalDatasetListingModel.setType(Integer.parseInt(values.get("type")));
}
return externalDatasetListingModel;
}).collect(Collectors.toList()) : new ArrayList<>();
this.modified = entity.getModified();
return this;
}
@Override
public Dataset toDataModel() throws Exception {
eu.eudat.data.entities.Dataset entity = new eu.eudat.data.entities.Dataset();
@ -208,7 +245,7 @@ public class DatasetWizardModel implements DataModel<Dataset, DatasetWizardModel
entity.setCreated(this.created != null ? this.created : new Date());
entity.setModified(new Date());
DatasetProfile profile = new DatasetProfile();
profile.setId(this.profile);
profile.setId(this.profile.getId());
entity.setProfile(profile);
if (this.registries != null && !this.registries.isEmpty()) {
entity.setRegistries(new HashSet<>());

38
dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlan.java
View File

@ -3,6 +3,7 @@ package eu.eudat.models.data.dmp;
import eu.eudat.data.entities.*;
import eu.eudat.logic.utilities.builders.XmlBuilder;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
import eu.eudat.models.data.entities.xmlmodels.dmpprofiledefinition.DataManagementPlanProfile;
import eu.eudat.models.data.funder.Funder;
@ -26,7 +27,7 @@ public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
private int status;
private boolean lockable;
private String description;
private List<DatasetListingModel> datasets;
private List<DatasetWizardModel> datasets;
private List<AssociatedProfile> profiles;
private Grant grant;
private List<Organisation> organisations;
@ -178,10 +179,11 @@ public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
this.lockable = lockable;
}
public List<DatasetListingModel> getDatasets() {
public List<DatasetWizardModel> getDatasets() {
return datasets;
}
public void setDatasets(List<DatasetListingModel> datasets) {
public void setDatasets(List<DatasetWizardModel> datasets) {
this.datasets = datasets;
}
@ -233,8 +235,8 @@ public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
public DataManagementPlan fromDataModel(DMP entity) {
this.id = entity.getId();
this.profile = entity.getProfile() != null ? new Tuple<UUID, String>(entity.getProfile().getId(), entity.getProfile().getLabel()) : null;
this.organisations = entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList());
this.researchers = entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList());
this.organisations = entity.getOrganisations() != null ? entity.getOrganisations().stream().map(item -> new Organisation().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
this.researchers = entity.getResearchers() != null ? entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList()): new ArrayList<>();
this.version = entity.getVersion();
this.groupId = this.groupId == null ? null : entity.getGroupId();
this.label = entity.getLabel();
@ -243,7 +245,7 @@ public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
this.grant.fromDataModel(entity.getGrant());
this.creator = new eu.eudat.models.data.userinfo.UserInfo();
this.groupId = entity.getGroupId();
this.lockable = entity.getDataset().stream().findAny().isPresent();
this.lockable = entity.getDataset() != null && entity.getDataset().stream().findAny().isPresent();
this.definition = entity.getProfile() == null ? null : new DataManagementPlanProfile().fromXml(XmlBuilder.fromXml(entity.getProfile().getDefinition()).getDocumentElement());
if (this.definition != null && this.definition.getFields() != null && !this.definition.getFields().isEmpty() && this.properties != null) {
this.definition.getFields().forEach(item -> {
@ -251,7 +253,7 @@ public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
if (fieldOptional.isPresent()) item.setValue(fieldOptional.get().get("value"));
});
}
if (entity.getUsers().stream().anyMatch(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())))
if (entity.getUsers() != null && entity.getUsers().stream().anyMatch(userDMP -> userDMP.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())))
this.creator.fromDataModel(entity.getUsers().stream().filter(user -> user.getRole().equals(UserDMP.UserDMPRoles.OWNER.getValue())).findFirst().get().getUser());
if (entity.getAssociatedDmps() != null && !entity.getAssociatedDmps().isEmpty()) {
@ -261,21 +263,23 @@ public class DataManagementPlan implements DataModel<DMP, DataManagementPlan> {
this.profiles.add(associatedProfile);
}
}
if (entity.isPublic()) {
this.datasets = entity.getDataset().stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue()) && !dataset.getStatus().equals(Dataset.Status.SAVED.getValue()))
.map(x-> new DatasetListingModel().fromDataModel(x)).collect(Collectors.toList());
} else {
this.datasets = entity.getDataset().stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue()))
.map(x-> new DatasetListingModel().fromDataModel(x)).collect(Collectors.toList());
if (entity.getDataset() != null) {
if (entity.isPublic()) {
this.datasets = entity.getDataset().stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue()) && !dataset.getStatus().equals(Dataset.Status.SAVED.getValue()))
.map(x -> new DatasetWizardModel().fromDataModelNoDmp(x)).collect(Collectors.toList());
} else {
this.datasets = entity.getDataset().stream()
.filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue()))
.map(x -> new DatasetWizardModel().fromDataModelNoDmp(x)).collect(Collectors.toList());
}
}
this.modified = entity.getModified();
this.created = entity.getCreated();
this.description = entity.getDescription();
this.status = entity.getStatus();
this.associatedUsers = entity.getUsers().stream().map(item -> new UserListingModel().fromDataModel(item.getUser())).collect(Collectors.toList());
this.users = entity.getUsers().stream().map(item -> new UserInfoListingModel().fromDataModel(item)).collect(Collectors.toList());
this.associatedUsers = entity.getUsers() != null ? entity.getUsers().stream().map(item -> new UserListingModel().fromDataModel(item.getUser())).collect(Collectors.toList()) : new ArrayList<>();
this.users = entity.getUsers() != null ? entity.getUsers().stream().map(item -> new UserInfoListingModel().fromDataModel(item)).collect(Collectors.toList()) : new ArrayList<>();
this.doi = entity.getDoi();
if (entity.getProject() != null) {

10
dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/DataManagementPlanEditorModel.java
View File

@ -3,6 +3,7 @@ package eu.eudat.models.data.dmp;
import eu.eudat.data.entities.*;
import eu.eudat.logic.utilities.builders.XmlBuilder;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.data.dynamicfields.DynamicFieldWithValue;
import eu.eudat.models.data.entities.xmlmodels.dmpprofiledefinition.DataManagementPlanProfile;
import eu.eudat.models.data.funder.FunderDMPEditorModel;
@ -26,7 +27,7 @@ public class DataManagementPlanEditorModel implements DataModel<DMP, DataManagem
private int status;
private boolean lockable;
private String description;
private List<DatasetListingModel> datasets;
private List<DatasetWizardModel> datasets;
private List<AssociatedProfile> profiles;
private eu.eudat.models.data.grant.GrantDMPEditorModel grant;
private List<Organisation> organisations;
@ -177,10 +178,11 @@ public class DataManagementPlanEditorModel implements DataModel<DMP, DataManagem
this.lockable = lockable;
}
public List<DatasetListingModel> getDatasets() {
public List<DatasetWizardModel> getDatasets() {
return datasets;
}
public void setDatasets(List<DatasetListingModel> datasets) {
public void setDatasets(List<DatasetWizardModel> datasets) {
this.datasets = datasets;
}
@ -253,7 +255,7 @@ public class DataManagementPlanEditorModel implements DataModel<DMP, DataManagem
this.profiles.add(associatedProfile);
}
}
this.datasets = entity.getDataset().stream().map(item -> new DatasetListingModel().fromDataModel(item)).collect(Collectors.toList());
this.datasets = entity.getDataset().stream().map(item -> new DatasetWizardModel().fromDataModelNoDmp(item)).collect(Collectors.toList());
this.modified = entity.getModified();
this.created = entity.getCreated();
this.description = entity.getDescription();

4
dmp-backend/web/src/main/java/eu/eudat/models/data/dmp/Organisation.java
View File

@ -4,6 +4,7 @@ import eu.eudat.models.DataModel;
import eu.eudat.logic.utilities.helpers.LabelGenerator;
import java.util.Date;
import java.util.UUID;
public class Organisation implements DataModel<eu.eudat.data.entities.Organisation, Organisation>, LabelGenerator {
private String label;
@ -85,6 +86,9 @@ public class Organisation implements DataModel<eu.eudat.data.entities.Organisati
organisationEntity.setReference(this.key + ":" + this.reference);
}
}
if (this.id != null) {
organisationEntity.setId(UUID.fromString(this.id));
}
organisationEntity.setLabel(this.name);
organisationEntity.setUri(this.label);
organisationEntity.setCreated(new Date());

20
dmp-backend/web/src/main/java/eu/eudat/models/data/external/ResearchersExternalSourcesModel.java vendored
View File

@ -6,14 +6,20 @@ import java.util.Map;
public class ResearchersExternalSourcesModel extends ExternalListingItem<ResearchersExternalSourcesModel> {
@Override
public ResearchersExternalSourcesModel fromExternalItem(List<Map<String, Object>> values) {
for (Map<String, Object> item : values) {
public ResearchersExternalSourcesModel fromExternalItem(List<Map<String, String>> values) {
for (Map<String, String> item : values) {
ExternalSourcesItemModel model = new ExternalSourcesItemModel();
model.setRemoteId((String)item.get("pid"));
model.setUri((String)item.get("uri"));
model.setName((String)item.get("name"));
model.setTag((String)item.get("tag"));
model.setKey((String)item.get("key"));
model.setRemoteId(item.get("pid"));
model.setUri(item.get("uri"));
switch (item.get("tag")) {
case "ORCID":
model.setName(item.get("name") + " (orcid:" + item.get("pid") + ")");
break;
default:
model.setName(item.get("name"));
}
model.setTag(item.get("tag"));
model.setKey(item.get("key"));
this.add(model);
}
return this;

9
dmp-backend/web/src/main/java/eu/eudat/models/data/invitation/Invitation.java
View File

@ -9,6 +9,7 @@ import java.util.UUID;
public class Invitation {
private UUID dataManagementPlan;
private List<UserInfoInvitationModel> users;
private Integer role;
public UUID getDataManagementPlan() {
return dataManagementPlan;
@ -25,4 +26,12 @@ public class Invitation {
public void setUsers(List<UserInfoInvitationModel> users) {
this.users = users;
}
public Integer getRole() {
return role;
}
public void setRole(Integer role) {
this.role = role;
}
}

18
dmp-backend/web/src/main/java/eu/eudat/models/data/invitation/Properties.java Normal file
View File

@ -0,0 +1,18 @@
package eu.eudat.models.data.invitation;
import javax.xml.bind.annotation.XmlElement;
import javax.xml.bind.annotation.XmlRootElement;
@XmlRootElement
public class Properties {
private Integer role;
@XmlElement(name = "role")
public Integer getRole() {
return role;
}
public void setRole(Integer role) {
this.role = role;
}
}

9
dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DataManagementPlanOverviewModel.java
View File

@ -176,12 +176,15 @@ public class DataManagementPlanOverviewModel implements DataModel<DMP, DataManag
this.id = entity.getId().toString();
this.label = entity.getLabel();
this.groupId = entity.getGroupId();
this.status = entity.getStatus();
if (entity.getResearchers() != null) {
this.researchers = entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList());
}
return this;
}
public DataManagementPlanOverviewModel fromDataModelDatasets(DMP entity) {
this.fromDataModel(entity);
this.status = entity.getStatus();
this.version = entity.getVersion();
this.grant = new GrantOverviewModel().fromDataModel(entity.getGrant());
if (entity.getProfile() != null) this.profile = entity.getProfile().getLabel();
@ -192,7 +195,9 @@ public class DataManagementPlanOverviewModel implements DataModel<DMP, DataManag
this.datasets = entity.getDataset().stream().filter(dataset -> !dataset.getStatus().equals(Dataset.Status.DELETED.getValue()) && !dataset.getStatus().equals(Dataset.Status.CANCELED.getValue())).map(x-> new DatasetOverviewModel().fromDataModel(x)).collect(Collectors.toList());
this.users = entity.getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList());
this.description = entity.getDescription();
this.researchers = entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList());
if (entity.getResearchers() != null) {
this.researchers = entity.getResearchers().stream().map(item -> new Researcher().fromDataModel(item)).collect(Collectors.toList());
}
if (entity.getAssociatedDmps() != null && !entity.getAssociatedDmps().isEmpty()) {
this.associatedProfiles = new LinkedList<>();

47
dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DatasetListingModel.java
View File

@ -5,8 +5,11 @@ import eu.eudat.models.DataModel;
import eu.eudat.models.data.dataset.DataRepository;
import eu.eudat.models.data.dataset.Service;
import eu.eudat.logic.utilities.helpers.LabelBuilder;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import java.util.ArrayList;
import java.util.Date;
import java.util.List;
import java.util.stream.Collectors;
@ -16,7 +19,7 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
private String grant;
private String dmp;
private String dmpId;
private String profile;
private DatasetProfileOverviewModel profile;
private String dataRepositories;
private String registries;
private String services;
@ -29,6 +32,9 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
private Date finalizedAt;
private Date dmpPublishedAt;
private int version;
private List<UserInfoListingModel> users;
private Boolean isPublic;
private Boolean isProfileLatestVersion;
public String getId() {
return id;
@ -65,10 +71,11 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.dmpId = dmpId;
}
public String getProfile() {
public DatasetProfileOverviewModel getProfile() {
return profile;
}
public void setProfile(String profile) {
public void setProfile(DatasetProfileOverviewModel profile) {
this.profile = profile;
}
@ -156,6 +163,30 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.version = version;
}
public List<UserInfoListingModel> getUsers() {
return users;
}
public void setUsers(List<UserInfoListingModel> users) {
this.users = users;
}
public Boolean getPublic() {
return isPublic;
}
public void setPublic(Boolean aPublic) {
isPublic = aPublic;
}
public Boolean getProfileLatestVersion() {
return isProfileLatestVersion;
}
public void setProfileLatestVersion(Boolean profileLatestVersion) {
isProfileLatestVersion = profileLatestVersion;
}
@Override
public DatasetListingModel fromDataModel(Dataset entity) {
this.id = entity.getId() != null ? entity.getId().toString() : "";
@ -165,7 +196,7 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.grant = entity.getDmp() != null ? entity.getDmp().getGrant().getLabel() : "";
this.dmp = entity.getDmp() != null ? entity.getDmp().getLabel() : "";
this.dmpId = entity.getDmp() != null ? entity.getDmp().getId().toString() : "";
this.profile = entity.getProfile() != null ? entity.getProfile().getLabel() : "";
this.profile = entity.getProfile() != null ? new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()) : null;
this.description = entity.getDescription();
this.status = entity.getStatus();
this.grantAbbreviation = entity.getDmp() != null ? entity.getDmp().getGrant().getAbbreviation() : "";
@ -173,9 +204,15 @@ public class DatasetListingModel implements DataModel<Dataset, DatasetListingMod
this.registries = LabelBuilder.getLabel(entity.getRegistries().stream().map(item -> new eu.eudat.models.data.dataset.Registry().fromDataModel(item)).collect(Collectors.toList()));
this.dataRepositories = LabelBuilder.getLabel(entity.getDatasetDataRepositories().stream().map(item -> new DataRepository().fromDataModel(item.getDataRepository())).collect(Collectors.toList()));
this.services = LabelBuilder.getLabel(entity.getServices().stream().map(item -> new Service().fromDataModel(item.getService())).collect(Collectors.toList()));
this.finalizedAt = entity.getFinalizedAt();
if (entity.getFinalizedAt() == null && entity.getStatus() == Dataset.Status.FINALISED.getValue()) {
this.finalizedAt = entity.getDmp().getFinalizedAt();
} else {
this.finalizedAt = entity.getFinalizedAt();
}
this.dmpPublishedAt = entity.getDmp().getPublishedAt();
this.version = entity.getDmp().getVersion();
this.users = entity.getDmp() != null ? entity.getDmp().getUsers().stream().map(x -> new UserInfoListingModel().fromDataModel(x)).collect(Collectors.toList()) : new ArrayList<>();
this.isPublic = entity.getDmp() != null ? entity.getDmp().isPublic() : false;
return this;
}

53
dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/VersionListingModel.java Normal file
View File

@ -0,0 +1,53 @@
package eu.eudat.models.data.listingmodels;
import eu.eudat.data.entities.DMP;
import eu.eudat.models.DataModel;
public class VersionListingModel implements DataModel<DMP, VersionListingModel> {
private String id;
private String groupId;
private Integer version;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getGroupId() {
return groupId;
}
public void setGroupId(String groupId) {
this.groupId = groupId;
}
public Integer getVersion() {
return version;
}
public void setVersion(Integer version) {
this.version = version;
}
@Override
public VersionListingModel fromDataModel(DMP entity) {
this.id = entity.getId().toString();
this.groupId = entity.getGroupId().toString();
this.version = entity.getVersion();
return this;
}
@Override
public DMP toDataModel() throws Exception {
return null;
}
@Override
public String getHint() {
return "versionListingModel";
}
}

131
dmp-backend/web/src/main/java/eu/eudat/models/data/principal/PrincipalModel.java Normal file
View File

@ -0,0 +1,131 @@
package eu.eudat.models.data.principal;
import eu.eudat.models.data.security.Principal;
import eu.eudat.types.Authorities;
import java.util.Date;
import java.util.Set;
import java.util.UUID;
import java.util.stream.Collectors;
public class PrincipalModel {
private UUID id;
private UUID token;
private String name;
private String email;
private Date expiresAt;
private String avatarUrl;
private Set<Authorities> authorities;
private String culture;
private String language;
private String timezone;
private String zenodoEmail;
public UUID getId() {
return id;
}
public void setId(UUID id) {
this.id = id;
}
public UUID getToken() {
return token;
}
public void setToken(UUID token) {
this.token = token;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getEmail() {
return email;
}
public void setEmail(String email) {
this.email = email;
}
public Date getExpiresAt() {
return expiresAt;
}
public void setExpiresAt(Date expiresAt) {
this.expiresAt = expiresAt;
}
public String getAvatarUrl() {
return avatarUrl;
}
public void setAvatarUrl(String avatarUrl) {
this.avatarUrl = avatarUrl;
}
public Set<Authorities> getAuthz() {
return authorities;
}
public Set<Integer> getAuthorities() {
return authorities.stream().map(authz -> authz.getValue()).collect(Collectors.toSet());
}
public void setAuthorities(Set<Authorities> authorities) {
this.authorities = authorities;
}
public String getCulture() {
return culture;
}
public void setCulture(String culture) {
this.culture = culture;
}
public String getLanguage() {
return language;
}
public void setLanguage(String language) {
this.language = language;
}
public String getTimezone() {
return timezone;
}
public void setTimezone(String timezone) {
this.timezone = timezone;
}
public String getZenodoEmail() {
return zenodoEmail;
}
public void setZenodoEmail(String zenodoEmail) {
this.zenodoEmail = zenodoEmail;
}
public static PrincipalModel fromEntity(Principal principal) {
PrincipalModel model = new PrincipalModel();
model.setId(principal.getId());
model.setToken(principal.getToken());
model.setAuthorities(principal.getAuthz());
model.setAvatarUrl(principal.getAvatarUrl());
model.setCulture(principal.getCulture());
model.setEmail(principal.getEmail());
model.setExpiresAt(principal.getExpiresAt());
model.setLanguage(principal.getLanguage());
model.setName(principal.getName());
model.setTimezone(principal.getTimezone());
model.setZenodoEmail(principal.getZenodoEmail());
return model;
}
}

6
dmp-backend/web/src/main/java/eu/eudat/models/data/quickwizard/DatasetDescriptionQuickWizardModel.java
View File

@ -1,6 +1,8 @@
package eu.eudat.models.data.quickwizard;
import eu.eudat.data.entities.DatasetProfile;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.dmp.DataManagementPlan;
import eu.eudat.data.entities.Dataset;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
@ -22,11 +24,11 @@ public class DatasetDescriptionQuickWizardModel extends PagedDatasetProfile {
}
public DatasetWizardModel toDataModel(DataManagementPlan dmp,UUID profile){
public DatasetWizardModel toDataModel(DataManagementPlan dmp, DatasetProfile profile){
DatasetWizardModel newDataset = new DatasetWizardModel();
newDataset.setLabel(datasetLabel);
newDataset.setCreated(new Date());
newDataset.setProfile(profile);
newDataset.setProfile(new DatasetProfileOverviewModel().fromDataModel(profile));
newDataset.setDmp(dmp);
newDataset.setStatus((short) this.getStatus());
//newDataset.setStatus(Dataset.Status.SAVED.getValue());

2
dmp-backend/web/src/main/java/eu/eudat/models/data/quickwizard/DmpQuickWizardModel.java
View File

@ -101,6 +101,8 @@ public class DmpQuickWizardModel {
dataManagementPlanEntity.setAssociatedUsers(user);
dataManagementPlanEntity.setExtraProperties(new HashMap<>());
dataManagementPlanEntity.getExtraProperties().put("language", this.language);
dataManagementPlanEntity.getExtraProperties().put("visible", false);
dataManagementPlanEntity.getExtraProperties().put("contact", principal.getId().toString());
return dataManagementPlanEntity;
}

9
dmp-backend/web/src/main/java/eu/eudat/models/data/security/Principal.java
View File

@ -12,6 +12,7 @@ public class Principal {
private UUID id;
private UUID token;
private String name;
private String email;
private Date expiresAt;
private String avatarUrl;
private Set<Authorities> authorities;
@ -47,6 +48,14 @@ public class Principal {
this.name = name;
}
public String getEmail() {
return email;
}
public void setEmail(String email) {
this.email = email;
}
public Date getExpiresAt() {
return expiresAt;
}

8
dmp-backend/web/src/main/java/eu/eudat/models/data/userinfo/UserInfo.java
View File

@ -22,7 +22,7 @@ public class UserInfo implements DataModel<eu.eudat.data.entities.UserInfo, User
private Date lastloggedin = null;
private String additionalinfo;
// private String additionalinfo;
public UUID getId() {
return id;
@ -88,13 +88,13 @@ public class UserInfo implements DataModel<eu.eudat.data.entities.UserInfo, User
this.lastloggedin = lastloggedin;
}
public String getAdditionalinfo() {
/*public String getAdditionalinfo() {
return additionalinfo;
}
public void setAdditionalinfo(String additionalinfo) {
this.additionalinfo = additionalinfo;
}
}*/
@Override
public UserInfo fromDataModel(eu.eudat.data.entities.UserInfo entity) {
@ -111,7 +111,7 @@ public class UserInfo implements DataModel<eu.eudat.data.entities.UserInfo, User
entity.setId(this.getId());
entity.setEmail(this.getEmail());
entity.setName(this.getName());
entity.setAdditionalinfo(this.getAdditionalinfo());
//entity.setAdditionalinfo(this.getAdditionalinfo());
entity.setAuthorization_level(this.getAuthorization_level());
entity.setCreated(this.getCreated());
entity.setLastloggedin(this.getLastloggedin());

10
dmp-backend/web/src/main/java/eu/eudat/models/data/userinfo/UserListingModel.java
View File

@ -17,7 +17,7 @@ public class UserListingModel implements DataModel<eu.eudat.data.entities.UserIn
private String name;
private Date created;
private Date lastloggedin;
private String additionalinfo;
//private String additionalinfo;
private List<Integer> appRoles;
public UUID getId() {
@ -69,12 +69,12 @@ public class UserListingModel implements DataModel<eu.eudat.data.entities.UserIn
this.lastloggedin = lastloggedin;
}
public String getAdditionalinfo() {
/*public String getAdditionalinfo() {
return additionalinfo;
}
public void setAdditionalinfo(String additionalinfo) {
this.additionalinfo = additionalinfo;
}
}*/
public List<Integer> getAppRoles() {
return appRoles;
@ -92,7 +92,7 @@ public class UserListingModel implements DataModel<eu.eudat.data.entities.UserIn
this.name = entity.getName();
this.created = entity.getCreated();
this.lastloggedin = entity.getLastloggedin();
this.additionalinfo = entity.getAdditionalinfo();
// this.additionalinfo = entity.getAdditionalinfo();
this.appRoles = entity.getUserRoles().stream().map(item -> item.getRole()).collect(Collectors.toList());
return this;
}
@ -107,7 +107,7 @@ public class UserListingModel implements DataModel<eu.eudat.data.entities.UserIn
userInfo.setName(this.name);
userInfo.setCreated(this.created);
userInfo.setLastloggedin(this.lastloggedin);
userInfo.setAdditionalinfo(this.additionalinfo);
// userInfo.setAdditionalinfo(this.additionalinfo);
return userInfo;
}

74
dmp-backend/web/src/main/java/eu/eudat/models/data/userinfo/UserProfile.java
View File

@ -1,27 +1,37 @@
package eu.eudat.models.data.userinfo;
import com.fasterxml.jackson.core.JsonParser;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.data.entities.*;
import eu.eudat.data.entities.UserInfo;
import eu.eudat.models.DataModel;
import eu.eudat.models.data.dmp.DataManagementPlan;
import net.minidev.json.parser.JSONParser;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.util.Date;
import java.util.List;
import java.util.UUID;
import java.io.IOException;
import java.util.*;
import java.util.stream.Collectors;
/**
* Created by ikalyvas on 8/24/2018.
*/
public class UserProfile implements DataModel<eu.eudat.data.entities.UserInfo, UserProfile> {
private static final Logger logger = LoggerFactory.getLogger(UserProfile.class);
private UUID id;
private String email;
private Short usertype;
private String name;
private Date lastloggedin;
private String additionalinfo;
//private String additionalinfo;
private List<DataManagementPlan> associatedDmps;
private String zenodoEmail;
private Map<String, Object> language;
private String timezone;
private Map<String, Object> culture;
private String avatarUrl;
public UUID getId() {
return id;
@ -63,13 +73,13 @@ public class UserProfile implements DataModel<eu.eudat.data.entities.UserInfo, U
this.lastloggedin = lastloggedin;
}
public String getAdditionalinfo() {
/*public String getAdditionalinfo() {
return additionalinfo;
}
public void setAdditionalinfo(String additionalinfo) {
this.additionalinfo = additionalinfo;
}
}*/
public List<DataManagementPlan> getAssociatedDmps() {
return associatedDmps;
@ -79,6 +89,46 @@ public class UserProfile implements DataModel<eu.eudat.data.entities.UserInfo, U
this.associatedDmps = associatedDmps;
}
public String getZenodoEmail() {
return zenodoEmail;
}
public void setZenodoEmail(String zenodoEmail) {
this.zenodoEmail = zenodoEmail;
}
public Map<String, Object> getLanguage() {
return language;
}
public void setLanguage(Map<String, Object> language) {
this.language = language;
}
public String getTimezone() {
return timezone;
}
public void setTimezone(String timezone) {
this.timezone = timezone;
}
public Map<String, Object> getCulture() {
return culture;
}
public void setCulture(Map<String, Object> culture) {
this.culture = culture;
}
public String getAvatarUrl() {
return avatarUrl;
}
public void setAvatarUrl(String avatarUrl) {
this.avatarUrl = avatarUrl;
}
@Override
public UserProfile fromDataModel(UserInfo entity) {
this.id = entity.getId();
@ -86,7 +136,17 @@ public class UserProfile implements DataModel<eu.eudat.data.entities.UserInfo, U
this.usertype = entity.getUsertype();
this.name = entity.getName();
this.lastloggedin = entity.getLastloggedin();
this.additionalinfo = entity.getAdditionalinfo();
//this.additionalinfo = entity.getAdditionalinfo();
try {
Map<String, Object> additionalInfo = new ObjectMapper().readValue(entity.getAdditionalinfo(), HashMap.class);
this.language = (Map)additionalInfo.get("language");
this.culture = (Map) additionalInfo.get("culture");
this.timezone = (String) additionalInfo.get("timezone");
this.zenodoEmail = (String) additionalInfo.get("zenodoEmail");
this.avatarUrl = (String) additionalInfo.get("avatarUrl");
} catch (IOException e) {
logger.error(e.getMessage(), e);
}
return this;
}

8
dmp-backend/web/src/main/java/eu/eudat/models/rda/DatasetId.java
View File

@ -53,6 +53,14 @@ public class DatasetId implements Serializable
private Map<String, Object> additionalProperties = new HashMap<String, Object>();
private final static long serialVersionUID = -6295164005851378031L;
public DatasetId() {
}
public DatasetId(String identifier, Type type) {
this.identifier = identifier;
this.type = type;
}
/**
* The Dataset Identifier Schema
* <p>

20
dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DatasetIdRDAMapper.java
View File

@ -52,15 +52,17 @@ public class DatasetIdRDAMapper {
}
private static void finalRDAMap(DatasetId rda, String property, String value) {
for (DatasetIdProperties datasetIdProperties : DatasetIdProperties.values()) {
if (property.contains(datasetIdProperties.getName())) {
switch (datasetIdProperties) {
case IDENTIFIER:
rda.setIdentifier(value);
break;
case TYPE:
rda.setType(DatasetId.Type.fromValue(value));
break;
if (value != null) {
for (DatasetIdProperties datasetIdProperties : DatasetIdProperties.values()) {
if (property.contains(datasetIdProperties.getName())) {
switch (datasetIdProperties) {
case IDENTIFIER:
rda.setIdentifier(value);
break;
case TYPE:
rda.setType(DatasetId.Type.fromValue(value));
break;
}
}
}
}

15
dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DatasetRDAMapper.java
View File

@ -7,9 +7,11 @@ import eu.eudat.elastic.entities.Tag;
import eu.eudat.logic.managers.DatasetManager;
import eu.eudat.logic.services.ApiContext;
import eu.eudat.logic.utilities.json.JsonSearcher;
import eu.eudat.models.data.datasetprofile.DatasetProfileOverviewModel;
import eu.eudat.models.data.datasetwizard.DatasetWizardModel;
import eu.eudat.models.rda.Contributor;
import eu.eudat.models.rda.Dataset;
import eu.eudat.models.rda.DatasetId;
import eu.eudat.models.rda.Language;
import org.json.JSONObject;
import org.slf4j.Logger;
@ -55,11 +57,14 @@ public class DatasetRDAMapper {
if (!idNodes.isEmpty()) {
rda.setDatasetId(DatasetIdRDAMapper.toRDA(idNodes));
}
if (rda.getDatasetId() == null) {
rda.setDatasetId(new DatasetId(dataset.getId().toString(), DatasetId.Type.OTHER));
}
List<JsonNode> typeNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.type");
if (!typeNodes.isEmpty()) {
rda.setType(typeNodes.get(0).get("value").asText());
} else {
rda.setType(dataset.getLabel());
rda.setType("DMP Dataset");
}
List<JsonNode> languageNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.language");
if (!languageNodes.isEmpty()) {
@ -92,9 +97,9 @@ public class DatasetRDAMapper {
rda.setKeyword(keywordNodes.stream().map(keywordNode -> {
JsonNode value = keywordNode.get("value");
if (value.isArray()) {
return StreamSupport.stream(value.spliterator(), false).map(node -> KeywordRDAMapper.toRDA(node.asText())).collect(Collectors.toList());
return StreamSupport.stream(value.spliterator(), false).map(node -> KeywordRDAMapper.toRDA(node.asText())).flatMap(Collection::stream).collect(Collectors.toList());
} else {
return Collections.singletonList(KeywordRDAMapper.toRDA(keywordNode.get("value").asText()));
return KeywordRDAMapper.toRDA(keywordNode.get("value").asText());
}
}).flatMap(Collection::stream).collect(Collectors.toList()));
for (int i = 0; i < keywordNodes.size(); i++) {
@ -117,6 +122,8 @@ public class DatasetRDAMapper {
List<JsonNode> sensitiveDataNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.sensitive_data");
if (!sensitiveDataNodes.isEmpty()) {
rda.setSensitiveData(sensitiveDataNodes.stream().map(sensitiveDataNode -> Dataset.SensitiveData.fromValue(sensitiveDataNode.get("value").asText())).findFirst().get());
} else {
rda.setSensitiveData(Dataset.SensitiveData.UNKNOWN);
}
List<JsonNode> technicalResourceNodes = JsonSearcher.findNodes(datasetDescriptionObj, "rdaProperty", "dataset.technical_resource");
if (!technicalResourceNodes.isEmpty()) {
@ -170,7 +177,7 @@ public class DatasetRDAMapper {
try {
Map<String, Object> properties = new HashMap<>();
DatasetWizardModel datasetWizardModel = new DatasetWizardModel();
datasetWizardModel.setProfile(entity.getProfile().getId());
datasetWizardModel.setProfile(new DatasetProfileOverviewModel().fromDataModel(entity.getProfile()));
datasetWizardModel.setDatasetProfileDefinition(datasetManager.getPagedProfile(datasetWizardModel, entity));
ObjectMapper mapper = new ObjectMapper();
String datasetDescriptionJson = mapper.writeValueAsString(datasetWizardModel.getDatasetProfileDefinition());

28
dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DmpRDAMapper.java
View File

@ -31,6 +31,18 @@ public class DmpRDAMapper {
@Transactional
public Dmp toRDA(DMP dmp) {
Map<String, Object> extraProperties;
if (dmp.getExtraProperties() == null) {
throw new IllegalArgumentException("DMP is missing required Data for RDA export");
} else {
extraProperties = new org.json.JSONObject(dmp.getExtraProperties()).toMap();
if (extraProperties.get("language") == null) {
throw new IllegalArgumentException("DMP must have it's language property defined");
}
if (extraProperties.get("contact") == null) {
throw new IllegalArgumentException("DMP must have it's contact property defined");
}
}
Dmp rda = new Dmp();
if (dmp.getDoi() != null && !dmp.getDoi().isEmpty()) {
rda.setDmpId(DmpIdRDAMapper.toRDA(dmp.getDoi()));
@ -42,11 +54,13 @@ public class DmpRDAMapper {
rda.setModified(dmp.getModified());
rda.setTitle(dmp.getLabel());
Map<String, Object> extraProperties = new org.json.JSONObject(dmp.getExtraProperties()).toMap();
if (!extraProperties.isEmpty()) {
if (extraProperties.get("language") != null) {
rda.setLanguage(LanguageRDAMapper.mapLanguageIsoToRDAIso(extraProperties.get("language").toString()));
if (extraProperties.get("ethicalIssues") != null) {
rda.setEthicalIssuesExist(Dmp.EthicalIssuesExist.fromValue(extraProperties.get("ethicalIsses").toString()));
} else {
rda.setEthicalIssuesExist(Dmp.EthicalIssuesExist.UNKNOWN);
}
rda.setLanguage(LanguageRDAMapper.mapLanguageIsoToRDAIso(extraProperties.get("language").toString()));
if (extraProperties.get("costs") != null) {
rda.setCost(new ArrayList<>());
((List) extraProperties.get("costs")).forEach(costl -> {
@ -59,10 +73,8 @@ public class DmpRDAMapper {
rda.getCost().add(cost);
});
}
if (extraProperties.get("contact") != null) {
UserInfo contact = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(UUID.fromString((String)extraProperties.get("contact")));
rda.setContact(ContactRDAMapper.toRDA(contact));
}
UserInfo contact = apiContext.getOperationsContext().getDatabaseRepository().getUserInfoDao().find(UUID.fromString((String) extraProperties.get("contact")));
rda.setContact(ContactRDAMapper.toRDA(contact));
}
/*UserInfo creator;
@ -101,7 +113,7 @@ public class DmpRDAMapper {
entity.getAssociatedDmps().add(exProfile);
}
}
if (rda.getContributor() != null && !rda.getContributor().isEmpty()) {
if (rda.getContributor() != null && !rda.getContributor().isEmpty() && rda.getContributor().get(0).getContributorId() != null) {
entity.setResearchers(rda.getContributor().stream().map(ContributorRDAMapper::toEntity).filter(StreamDistinctBy.distinctByKey(Researcher::getReference)).collect(Collectors.toSet()));
}
entity.setCreated(rda.getCreated());

16
dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/KeywordRDAMapper.java
View File

@ -1,25 +1,29 @@
package eu.eudat.models.rda.mapper;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.eudat.elastic.entities.Tag;
import eu.eudat.logic.utilities.json.JavaToJson;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import java.io.IOException;
import java.util.HashMap;
import java.util.Map;
import java.util.*;
import java.util.stream.Collectors;
public class KeywordRDAMapper {
private static final Logger logger = LoggerFactory.getLogger(KeywordRDAMapper.class);
public static String toRDA(String value) {
public static List<String> toRDA(String value) {
ObjectMapper mapper = new ObjectMapper();
try {
Map<String, Object> map = mapper.readValue(value, HashMap.class);
return (String) map.get("name");
value = JavaToJson.objectStringToJson(value);
List<Tag> tags = Arrays.asList(mapper.readValue(value, Tag[].class));
List<String> keywordNames = tags.stream().map(Tag::getName).collect(Collectors.toList());
return keywordNames;
} catch (IOException e) {
logger.error(e.getMessage(), e);
}
return value;
return new ArrayList<>();
}
}

2
dmp-backend/web/src/main/resources/config/application-devel.properties
View File

@ -18,7 +18,7 @@ http-logger.server-address = http://localhost:31311
pdf.converter.url=http://localhost:88/
####################CONFIGURATION FILES OVERRIDES CONFIGURATIONS##########
configuration.externalUrls=ExternalUrls.xml
configuration.externalUrls=externalUrls/ExternalUrls.xml
configuration.rda=RDACommonStandards.txt
configuration.h2020template=documents/h2020.docx
configuration.configurable_login_providers=configurableLoginProviders.json

8
dmp-backend/web/src/main/resources/config/application.properties
View File

@ -20,10 +20,10 @@ spring.mail.properties.mail.smtp.auth=false
spring.mail.properties.mail.smtp.starttls.enable=false
####################CONFIGURATION FILES OVERRIDES CONFIGURATIONS##########
configuration.externalUrls=
configuration.rda=
configuration.h2020template=
configuration.configurable_login_providers=
configuration.externalUrls=externalUrls/ExternalUrls.xml
configuration.rda=RDACommonStandards.txt
configuration.h2020template=documents/h2020.docx
configuration.configurable_login_providers=ConfigurableLoginProviders.json
#############LOGIN CONFIGURATIONS#########
#############GENERIC LOGIN CONFIGURATIONS#########

89
dmp-backend/web/src/main/resources/externalUrls/ExternalUrls.xml
View File

@ -149,8 +149,8 @@
<key>openaire</key>
<label>OpenAIRE</label>
<ordinal>1</ordinal>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype%20exact%20project)%20and%20((projectcode_nt%20exact%20%22{like}%22)or({like}))){funderQuery}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<funderQuery>&amp;fq=(funder%20exact%20%22{funderId}%22)</funderQuery>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype exact project) and ((projectcode_nt exact "{like}")or({like}))){funderQuery}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<funderQuery>&amp;fq=(funder exact "{funderId}")</funderQuery>
<firstPage>0</firstPage>
<contenttype>application/json; charset=utf-8</contenttype>
<data>
@ -228,7 +228,7 @@
<label>OpenAIRE</label>
<ordinal>1</ordinal>
<type>External</type>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype%20exact%20project)%20and%20((projectcode_nt%20exact%20%22*%22)or(*)))&amp;fq=(funder%20exact%20{funderId})&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype exact project) and ((projectcode_nt exact "*")or(*)))&amp;fq=(funder exact {funderId})&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<firstPage>0</firstPage>
<contenttype>application/json; charset=utf-8</contenttype>
<data>
@ -501,7 +501,7 @@
<label>OpenAIRE</label>
<ordinal>1</ordinal>
<type>External</type>
<url>https://services.openaire.eu/search/v2/api/datasources?q={like}&amp;fq=datasourcetypeuiname%20exact%20%22Data%20Repository%22&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<url>https://services.openaire.eu/search/v2/api/datasources?q={like}&amp;fq=datasourcetypeuiname exact "Data Repository"&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<firstPage>0</firstPage>
<contenttype>application/json;charset=UTF-8</contenttype>
<data>
@ -519,7 +519,7 @@
<label>OpenAIRE Alternative</label>
<ordinal>1</ordinal>
<type>External</type>
<url>https://services.openaire.eu/search/v2/api/resources?query=oaftype%20exact%20datasource%20and%20{like}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<url>https://services.openaire.eu/search/v2/api/resources?query=oaftype exact datasource and {like}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<firstPage>0</firstPage>
<contenttype>application/json;charset=UTF-8</contenttype>
<data>
@ -615,6 +615,25 @@
</data>
<paginationpath>$['meta']['pagination']['page','pages','count']</paginationpath>
</urlConfig>
<urlConfig>
<key>eosc</key>
<label>EOSC Providers</label>
<ordinal>2</ordinal>
<type>External</type>
<url>https://beta.providers.eosc-portal.eu/api/service/all?query={like}&amp;from={page}&amp;quantity={pageSize}</url>
<firstPage>0</firstPage>
<contenttype>application/json; charset=utf-8</contenttype>
<data>
<path>$['results'][*]</path>
<fields>
<id>'id'</id>
<name>'name'</name>
<uri>'webpage'</uri>
<description>'description'</description>
</fields>
</data>
<paginationpath>$['from','to','total']</paginationpath>
</urlConfig>
<!-- <urlConfig>
<key>openAire</key>
<label>OpenAIRE</label>
@ -678,44 +697,6 @@
</data>
<paginationpath>$['meta']['pagination']['page','pages','count']</paginationpath>
</urlConfig>
<!--<urlConfig>
<key>orcid</key>
<label>ORCID</label>
<ordinal>2</ordinal>
<type>External</type>
<url>https://pub.sandbox.orcid.org/v3.0/search/?q={like}&amp;start={page}&amp;rows={pageSize}</url>
<firstPage>0</firstPage>
<contenttype>application/json; charset=utf-8</contenttype>
<data>
<path>$['result'][*]['orcid-identifier']</path>
<fields>
<id>'id'</id>
<name>'name'</name>
<uri>'uri'</uri>
<path>'path'</path>
<host>'host'</host>
</fields>
<urlConfig>
<key>orcid</key>
<label>ORCID</label>
<ordinal>3</ordinal>
<type>External</type>
<url>https://pub.{host}/v3.0/{path}/personal-details</url>
<firstPage>0</firstPage>
<data>
<parse-class>eu.eudat.models.data.external.orcid.PersonalDetails</parse-class>
<parse-field>name</parse-field>
<merge-fields>
<field>givenNames</field>
<field>familyName</field>
</merge-fields>
<merge-field-name>name</merge-field-name>
</data>
<paginationpath>$['num-found']</paginationpath>
</urlConfig>
</data>
<paginationpath>$['num-found']</paginationpath>
</urlConfig>-->
<urlConfig>
<key>orcid</key>
<label>ORCID</label>
@ -723,15 +704,15 @@
<type>External</type>
<url>https://pub.sandbox.orcid.org/v3.0/expanded-search/?q={like}&amp;start={page}&amp;rows={pageSize}</url>
<firstPage>0</firstPage>
<contenttype>application/vnd.orcid+xml; qs=5;charset=UTF-8</contenttype>
<contenttype>application/json; charset=UTF-8</contenttype>
<data>
<parse-class>eu.eudat.models.data.external.orcid.ExpandedSearch</parse-class>
<parse-field>expandedResults</parse-field>
<merge-fields>
<field>givenNames</field>
<field>familyName</field>
</merge-fields>
<merge-field-name>name</merge-field-name>
<path>$['expanded-result'][*]</path>
<fields>
<id>'orcid-id'</id>
<firstName>'given-names'</firstName>
<lastName>'family-names'</lastName>
<name>'name'</name>
</fields>
</data>
<paginationpath>$['num-found']</paginationpath>
</urlConfig>
@ -899,7 +880,7 @@
</urlConfig>
<urlConfig>
<key>openaire</key>
<label>OpenAire</label>
<label>OpenAIRE</label>
<ordinal>2</ordinal>
<type>External</type>
<url>https://services.openaire.eu/search/v2/api/datasets/?q={like}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
@ -908,12 +889,12 @@
<data>
<path>$['results'][*]['result']['metadata']['oaf:entity']['oaf:result']</path>
<fields>
<id>'pid'</id>
<id>'originalId'</id>
<name>'title'</name>
<count>'count'</count>
</fields>
</data>
<paginationpath>$['meta']['page','size','total']</paginationpath>
<paginationpath>$['meta']['pagination']['page','pages','count']</paginationpath>
</urlConfig>
<!-- <urlConfig>
<key>openAire</key>

23
dmp-backend/web/src/main/resources/externalUrls/ExternalUrlsProduction.xml
View File

@ -58,8 +58,8 @@
<key>openAIRE</key>
<label>OpenAIRE</label>
<ordinal>1</ordinal>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype%20exact%20project)%20and%20((projectcode_nt%20exact%20%22{like}%22)or({like}))){funderQuery}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<funderQuery>&amp;fq=(funder%20exact%20%22{funderId}%22)</funderQuery>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype exact project) and ((projectcode_nt exact "{like}")or({like}))){funderQuery}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<funderQuery>&amp;fq=(funder exact "{funderId}")</funderQuery>
<firstPage>0</firstPage>
<contenttype>application/json; charset=utf-8</contenttype>
<data>
@ -223,6 +223,25 @@
</data>
<paginationpath>$['meta']['pagination']['page','pages','count']</paginationpath>
</urlConfig>
<urlConfig>
<key>orcid</key>
<label>ORCID</label>
<ordinal>2</ordinal>
<type>External</type>
<url>https://pub.orcid.org/v3.0/expanded-search/?q={like}&amp;start={page}&amp;rows={pageSize}</url>
<firstPage>0</firstPage>
<contenttype>application/json; charset=UTF-8</contenttype>
<data>
<path>$['expanded-result'][*]</path>
<fields>
<id>'orcid-id'</id>
<firstName>'given-names'</firstName>
<lastName>'family-names'</lastName>
<name>'name'</name>
</fields>
</data>
<paginationpath>$['num-found']</paginationpath>
</urlConfig>
</urls>
<fetchMode>FIRST</fetchMode> <!-- EITHER 'FIRST' OR 'ALL' -->
</researchers>

23
dmp-backend/web/src/main/resources/externalUrls/ExternalUrlsStaging.xml
View File

@ -61,8 +61,8 @@
<key>openAIRE</key>
<label>OpenAIRE</label>
<ordinal>1</ordinal>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype%20exact%20project)%20and%20((projectcode_nt%20exact%20%22{like}%22)or({like}))){funderQuery}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<funderQuery>&amp;fq=(funder%20exact%20%22{funderId}%22)</funderQuery>
<url>https://services.openaire.eu/search/v2/api/resources?query=((oaftype exact project) and ((projectcode_nt exact "{like}")or({like}))){funderQuery}&amp;page={page}&amp;size={pageSize}&amp;format=json</url>
<funderQuery>&amp;fq=(funder exact "{funderId}")</funderQuery>
<firstPage>0</firstPage>
<contenttype>application/json; charset=utf-8</contenttype>
<data>
@ -235,6 +235,25 @@
</data>
<paginationpath>$['meta']['pagination']['page','pages','count']</paginationpath>
</urlConfig>
<urlConfig>
<key>orcid</key>
<label>ORCID</label>
<ordinal>2</ordinal>
<type>External</type>
<url>https://pub.orcid.org/v3.0/expanded-search/?q={like}&amp;start={page}&amp;rows={pageSize}</url>
<firstPage>0</firstPage>
<contenttype>application/json; charset=UTF-8</contenttype>
<data>
<path>$['expanded-result'][*]</path>
<fields>
<id>'orcid-id'</id>
<firstName>'given-names'</firstName>
<lastName>'family-names'</lastName>
<name>'name'</name>
</fields>
</data>
<paginationpath>$['num-found']</paginationpath>
</urlConfig>
</urls>
<fetchMode>FIRST</fetchMode> <!-- EITHER 'FIRST' OR 'ALL' -->
</researchers>

2
dmp-backend/web/src/main/resources/templates/email/email.html
View File

@ -261,7 +261,7 @@
<tr>
<td>
<p>Dear {recipient},</p>
<p>You have been invited to collaborate to Data Management plan {dmpname}.</p>
<p>You have been invited to collaborate to Data Management plan {dmpname} with role {dmprole}.</p>
<p>Click the button to redirect to {dmpname}.</p>
<table border="0" cellpadding="0" cellspacing="0" class="btn btn-primary">

14
dmp-db-scema/updates/00.00.005_remove_user_association_table.sql
View File

@ -1,4 +1,10 @@
DROP TABLE IF EXISTS "UserAssociation";
INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.00.005', '2020-06-03 12:00:00.000000+03', now(), 'Remove user association table');
DO $$DECLARE
this_version CONSTANT varchar := '00.00.005';
BEGIN
PERFORM * FROM "DBVersion" WHERE version = this_version;
IF FOUND THEN RETURN; END IF;
DROP TABLE IF EXISTS "UserAssociation";
INSERT INTO public."DBVersion" VALUES ('DMPDB', '00.00.005', '2020-06-03 12:00:00.000000+03', now(), 'Remove user association table');
END$$;

31
dmp-frontend/Dockerfile.CI Normal file
View File

@ -0,0 +1,31 @@
# stage1 as builder
FROM node:12-alpine as builder
# copy the package.json to install dependencies
COPY package.json ./
# Install the dependencies and make the folder
RUN npm install && mkdir /src && mv ./node_modules ./src
WORKDIR /src
COPY . .
# Build the project and copy the files
RUN npm run ng build -- --deploy-url=/ --prod
FROM nginx:alpine
#!/bin/sh
COPY nginx.conf.CI /etc/nginx/nginx.conf
## Remove default nginx index page
RUN rm -rf /usr/share/nginx/html/*
# Copy from the stahg 1
COPY --from=builder /src/dist /usr/share/nginx/html
EXPOSE 8080
ENTRYPOINT ["nginx", "-g", "daemon off;"]

4
dmp-frontend/angular.json
View File

@ -19,9 +19,7 @@
"assets": [
"src/assets",
"src/favicon.ico",
{ "glob": "**/*", "input": "node_modules/tinymce/skins", "output": "/tinymce/skins/" },
{ "glob": "**/*", "input": "node_modules/tinymce/themes", "output": "/tinymce/themes/" },
{ "glob": "**/*", "input": "node_modules/tinymce/plugins", "output": "/tinymce/plugins/" }
{ "glob": "**/*", "input": "node_modules/tinymce", "output": "/tinymce/" }
],
"styles": [
"src/styles.scss",

28
dmp-frontend/nginx.conf.CI Normal file
View File

@ -0,0 +1,28 @@
server {
listen 8080;
sendfile on;
default_type application/octet-stream;
gzip on;
gzip_http_version 1.1;
gzip_disable "MSIE [1-6]\.";
gzip_min_length 1100;
gzip_vary on;
gzip_proxied expired no-cache no-store private auth;
gzip_types text/plain text/css application/json application/javascript application/x-javascript text/xml application/xml application/xml+rss text/javascript;
gzip_comp_level 9;
root /usr/share/nginx/html;
location / {
try_files $uri $uri/ /index.html =404;
add_header Cache-Control "no-store, no-cache, must-revalidate";
}
}

7
dmp-frontend/package.json
View File

@ -22,7 +22,7 @@
"@ngx-translate/core": "^11.0.1",
"@ngx-translate/http-loader": "^4.0.0",
"@swimlane/ngx-datatable": "^16.0.2",
"@tinymce/tinymce-angular": "^3.4.0",
"@tinymce/tinymce-angular": "^3.6.1",
"@w11k/angular-sticky-things": "^1.1.2",
"bootstrap": "^4.3.1",
"cookieconsent": "^3.1.1",
@ -30,10 +30,13 @@
"file-saver": "^2.0.2",
"moment": "^2.24.0",
"moment-timezone": "^0.5.26",
"ng-dialog-animation": "^9.0.3",
"ngx-cookie-service": "^2.2.0",
"ngx-cookieconsent": "^2.2.3",
"ngx-dropzone": "^2.2.2",
"ngx-guided-tour": "^1.1.10",
"rxjs": "^6.3.2",
"tinymce": "^5.1.6",
"tinymce": "^5.4.2",
"tslib": "^1.10.0",
"web-animations-js": "^2.3.2",
"zone.js": "~0.9.1"

8
dmp-frontend/src/app/app-routing.module.ts
View File

@ -139,6 +139,14 @@ const appRoutes: Routes = [
title: 'GENERAL.TITLES.PRIVACY'
}
},
{
path: 'opensource-licences',
loadChildren: () => import('./ui/sidebar/sidebar-footer/opensource-licences/opensource-licenses.module').then(m => m.OpensourceLicencesModule),
data: {
breadcrumb: true,
title: 'GENERAL.TITLES.OPENSOURCE-LICENCES'
}
},
{
path: 'terms-and-conditions',
loadChildren: () => import('./ui/sidebar/sidebar-footer/terms/terms.module').then(m => m.TermsModule),

42
dmp-frontend/src/app/app.component.html
View File

@ -1,6 +1,16 @@
<div class="wrapper" *ngIf="!onlySplash">
<div class="sidebar sidebar-shadow" data-color="danger" data-background-color="white"
data-image="./assets/images/logan-troxell-9187-unsplash.jpg">
<app-navbar (sidebarToggled)="sidenav.toggle(); toggleNavbar($event);"></app-navbar>
<mat-sidenav-container fullscreen class="main-container">
<mat-sidenav #sidenav mode="side" opened class="sidenav" [fixedInViewport]="true" [fixedTopGap]="80">
<app-sidebar></app-sidebar>
</mat-sidenav>
<mat-sidenav-content class="sidenav-content">
<div id="main-page">
<router-outlet (activate)='onActivate($event)' (deactivate)='onDeactivate($event)'></router-outlet>
</div>
</mat-sidenav-content>
</mat-sidenav-container>
<!-- <div class="sidebar sidebar-shadow" data-color="danger" data-background-color="white" data-image="./assets/images/logan-troxell-9187-unsplash.jpg">
<app-sidebar></app-sidebar>
<div class="sidebar-background" style="background-image: url(./assets/images/logan-troxell-9187-unsplash.jpg)">
</div>
@ -8,35 +18,11 @@
<div class="main-panel">
<app-navbar></app-navbar>
<div>
<!-- <app-breadcrumb *ngIf="this.isAuthenticated() && (hasBreadCrumb | async)"></app-breadcrumb> -->
<router-outlet (activate)='onActivate($event)' (deactivate)='onDeactivate($event)'></router-outlet>
</div>
</div>
</div> -->
</div>
<app-notification *ngIf="!onlySplash"></app-notification>
<router-outlet *ngIf="onlySplash"></router-outlet>
<!-- <app-navigation class="fixed"></app-navigation>
<div class="container-fluid main-container">
<div class="row" *ngIf="helpContentEnabled">
<app-help-content position="top"></app-help-content>
</div>
<div class="row">
<div class="col-md-2">
<app-help-content position="left" *ngIf="helpContentEnabled"></app-help-content>
</div>
<div class="col-md-8">
<app-breadcrumb *ngIf="this.isAuthenticated() && (hasBreadCrumb | async)"></app-breadcrumb>
<router-outlet (activate)='onActivate($event)' (deactivate)='onDeactivate($event)'></router-outlet>
</div>
<div class="col-md-2">
<app-help-content position="right" *ngIf="helpContentEnabled"></app-help-content>
</div>
</div>
<div class="row" *ngIf="helpContentEnabled">
<app-help-content position="bottom"></app-help-content>
</div>
</div>
<app-notification></app-notification> -->
<ngx-guided-tour></ngx-guided-tour>

25
dmp-frontend/src/app/app.component.scss
View File

@ -6,9 +6,30 @@
width: 100%;
}
// .main-container {
// margin-top: 64px;
// padding-top: 10px;
// }
.main-container {
margin-top: 64px;
padding-top: 10px;
top: 80px;
left: 0;
right: 0;
}
.sidenav {
display: flex;
align-items: center;
justify-content: center;
width: 260px;
background: #ffffff 0% 0% no-repeat padding-box;
box-shadow: 0px 0px 16px 2px #00000029;
border-right-width: 0px;
opacity: 1;
}
.sidenav-content {
background-color: whitesmoke;
}
.sidebar-shadow {

45
dmp-frontend/src/app/app.component.ts
View File

@ -32,7 +32,7 @@ export class AppComponent implements OnInit {
sideNavOpen = false;
helpContentEnabled: boolean;
private statusChangeSubscription: Subscription;
onlySplash = false;
onlySplash = true;
constructor(
private router: Router,
@ -91,26 +91,19 @@ export class AppComponent implements OnInit {
filter(event => event instanceof NavigationEnd),
map(() => {
let child = this.route.firstChild;
while (child.firstChild) {
child = child.firstChild;
}
if (child.snapshot.data['title']) {
return child.snapshot.data['title'];
if (child != null) {
while (child.firstChild) {
child = child.firstChild;
}
if (child.snapshot.data['title']) {
return child.snapshot.data['title'];
}
}
return appTitle;
})
).subscribe((ttl: string) => {
if (ttl.length > 0) {
this.translate.get(ttl).subscribe((translated: string) => {
this.translate.get('GENERAL.TITLES.PREFIX').subscribe((titlePrefix: string) => {
this.titleService.setTitle(titlePrefix + translated);
});
});
} else {
this.translate.get('GENERAL.TITLES.GENERAL').subscribe((translated: string) => {
this.titleService.setTitle(translated);
});
}
this.translateTitle(ttl);
this.translate.onLangChange.subscribe(() => this.translateTitle(ttl));
});
this.statusChangeSubscription = this.ccService.statusChange$.subscribe((event: NgcStatusChangeEvent) => {
@ -140,6 +133,20 @@ export class AppComponent implements OnInit {
})
}
translateTitle(ttl: string) {
if (ttl.length > 0) {
this.translate.get(ttl).subscribe((translated: string) => {
this.translate.get('GENERAL.TITLES.PREFIX').subscribe((titlePrefix: string) => {
this.titleService.setTitle(titlePrefix + translated);
});
});
} else {
this.translate.get('GENERAL.TITLES.GENERAL').subscribe((translated: string) => {
this.titleService.setTitle(translated);
});
}
}
ngOnDestroy() {
this.statusChangeSubscription.unsubscribe();
}
@ -171,5 +178,9 @@ export class AppComponent implements OnInit {
this.authentication.current() && this.authentication.current().culture ? this.cultureService.cultureSelected(this.authentication.current().culture) : this.cultureService.cultureSelected(this.configurationService.defaultCulture);
this.authentication.current() && this.authentication.current().language ? this.language.changeLanguage(this.authentication.current().language) : this.language.changeLanguage('en');
}
toggleNavbar(event) {
document.getElementById('hamburger').classList.toggle("change");
}
}

14
dmp-frontend/src/app/app.module.ts
View File

@ -31,6 +31,8 @@ import { TranslateServerLoader } from './core/services/language/server.loader';
import { BaseHttpService } from './core/services/http/base-http.service';
import { ConfigurationService } from './core/services/configuration/configuration.service';
import { Oauth2DialogModule } from './ui/misc/oauth2-dialog/oauth2-dialog.module';
import { MAT_FORM_FIELD_DEFAULT_OPTIONS, MatFormFieldDefaultOptions } from '@angular/material';
import { GuidedTourModule } from './library/guided-tour/guided-tour.module';
// AoT requires an exported function for factories
export function HttpLoaderFactory(http: HttpClient, appConfig: ConfigurationService) {
@ -69,6 +71,11 @@ const cookieConfig: NgcCookieConsentConfig = {
type: 'info'
};
const appearance: MatFormFieldDefaultOptions = {
appearance: 'outline'
// appearance: 'standard'
};
@NgModule({
imports: [
BrowserModule,
@ -99,7 +106,8 @@ const cookieConfig: NgcCookieConsentConfig = {
NavbarModule,
SidebarModule,
NgcCookieConsentModule.forRoot(cookieConfig),
Oauth2DialogModule
Oauth2DialogModule,
GuidedTourModule.forRoot()
],
declarations: [
AppComponent,
@ -118,6 +126,10 @@ const cookieConfig: NgcCookieConsentConfig = {
deps: [CultureService],
useFactory: (cultureService) => cultureService.getCurrentCulture().name
},
{
provide: MAT_FORM_FIELD_DEFAULT_OPTIONS,
useValue: appearance
},
Title,
CookieService
],

9
dmp-frontend/src/app/core/common/enum/recent-activity-order.ts Normal file
View File

@ -0,0 +1,9 @@
export enum RecentActivityOrder {
LABEL = "label",
CREATED = "created",
MODIFIED = "modified",
FINALIZED = "finalizedAt",
PUBLISHED = "publishedAt",
DATASETPUBLISHED = "dmp:publishedAt|join|",
STATUS = "status"
}

4
dmp-frontend/src/app/core/common/enum/save-type.ts Normal file
View File

@ -0,0 +1,4 @@
export enum SaveType {
close = 0,
addNew = 1
}

1
dmp-frontend/src/app/core/model/auth/principal.ts
View File

@ -4,6 +4,7 @@ export interface Principal {
id: string;
token: string;
name: string;
email: string;
expiresAt: Date;
authorities: AppRole[];
avatarUrl: string;

14
dmp-frontend/src/app/core/model/data-table/data-table-request.ts
View File

@ -12,3 +12,17 @@ export class DataTableRequest<T> extends RequestItem<T> {
this.orderings = orderings;
}
}
export class DataTableMultiTypeRequest<T> extends RequestItem<T> {
dmpOffset = 0;
datasetOffset = 0;
length = 0;
public orderings: ColumnOrdering;
constructor(dmpOffset: number, datasetOffset: number, length: number, orderings: ColumnOrdering) {
super();
this.length = length;
this.dmpOffset = dmpOffset;
this.datasetOffset = datasetOffset;
this.orderings = orderings;
}
}

1
dmp-frontend/src/app/core/model/dataset-profile-definition/field-data/field-data.ts
View File

@ -41,6 +41,7 @@ export interface TextAreaFieldData extends FieldData {
export interface WordListFieldData extends FieldData {
type: DatasetProfileComboBoxType;
options: Array<FieldDataOption>;
multiList: boolean;
}
export interface FieldDataOption extends FieldData {

13
dmp-frontend/src/app/core/model/dataset/dataset-listing.ts
View File

@ -1,20 +1,25 @@
import { DatasetProfileModel } from './dataset-profile';
export interface DatasetListingModel {
id: String;
label: String;
id: string;
label: string;
dmp: String;
dmpId: String;
grant: String;
grantId: String;
grantAbbreviation: String;
profile: String;
profile: DatasetProfileModel;
dataRepositories: String;
registries: String;
services: String;
description: String;
status: Number;
status: number;
created: Date;
modified: Date;
finalizedAt: Date;
dmpPublishedAt?: Date;
version: number;
users: any[];
public: boolean;
isProfileLatestVersion: boolean;
}

11
dmp-frontend/src/app/core/model/dataset/dataset-overview.ts
View File

@ -1,8 +1,17 @@
import { DatasetProfileModel } from "./dataset-profile";
import { GrantOverviewModel } from '../grant/grant-overview';
import { DmpOverviewModel } from '../dmp/dmp-overview';
export interface DatasetOverviewModel {
id: string;
label: string;
status: any;
status: number;
datasetTemplate: DatasetProfileModel;
users: any[];
dmp: DmpOverviewModel;
grant: GrantOverviewModel;
description: String;
public: boolean;
modified: Date;
}

9
dmp-frontend/src/app/core/model/dmp/dmp-listing.ts
View File

@ -1,23 +1,24 @@
import { DmpStatus } from "../../common/enum/dmp-status";
import { DmpAssociatedProfileModel } from '../dmp-profile/dmp-associated-profile';
export interface DmpListingModel {
id: string;
label: String;
label: string;
description: String;
status: DmpStatus;
grant: String;
grantId: String;
grantAbbreviation: String;
profile: String;
creationTime: String;
modifiedTime: String;
creationTime: string;
modifiedTime: string;
publishedAt: Date;
finalizedAt: Date;
organisations: String;
groupId: string;
version: number;
datasets: any[];
associatedProfiles: any[];
associatedProfiles: DmpAssociatedProfileModel[];
users: any[];
public: boolean;
}

1
dmp-frontend/src/app/core/model/dmp/dmp-overview.ts
View File

@ -1,5 +1,4 @@
import { OrganizationModel } from "../organisation/organization";
import { DatasetUrlListing } from "../dataset/dataset-url-listing";
import { UserInfoListingModel } from "../user/user-info-listing";
import { DmpAssociatedProfileModel } from "../dmp-profile/dmp-associated-profile";
import { ResearcherModel } from "../researcher/researcher";

3
dmp-frontend/src/app/core/model/dmp/dmp.ts
View File

@ -11,6 +11,7 @@ import { ProjectModel } from "../project/project";
import { FunderModel } from "../funder/funder";
import { DmpStatus } from '@app/core/common/enum/dmp-status';
import { ExtraPropertiesFormModel } from '@app/ui/dmp/editor/general-tab/extra-properties-form.model';
import { DatasetWizardModel } from '../dataset/dataset-wizard';
export interface DmpModel {
id: string;
@ -24,7 +25,7 @@ export interface DmpModel {
grant: GrantListingModel;
project: ProjectModel;
funder: FunderModel;
datasets: DatasetModel[];
datasets: DatasetWizardModel[];
datasetsToBeFinalized: string[];
profiles: DmpProfile[];
organisations: OrganizationModel[];

4
dmp-frontend/src/app/core/model/dmp/invitation/dmp-invitation.ts
View File

@ -5,11 +5,13 @@ export class DmpInvitation {
public dataManagementPlan: string;
public users = new Array<DmpInvitationUser>();
public role: number;
buildForm(): FormGroup {
const formGroup = new FormBuilder().group({
dataManagementPlan: [this.dataManagementPlan],
users: [this.users]
users: [this.users],
role: [this.role]
});
return formGroup;

23
dmp-frontend/src/app/core/model/recent-activity/recent-activity.model.ts Normal file
View File

@ -0,0 +1,23 @@
import { RecentActivityType } from '@app/core/common/enum/recent-activity-type';
import { UserInfoListingModel } from '../user/user-info-listing';
import { DatasetProfileModel } from '../dataset/dataset-profile';
export class RecentActivityModel {
id: string;
title: string;
description: String;
created: Date;
modified: Date;
status: number;
version: number;
grant: String;
grantAbbreviation: String;
grantId: String;
finalizedAt: Date;
publishedAt: Date;
profile: DatasetProfileModel;
type: RecentActivityType;
users: UserInfoListingModel[];
public: boolean;
}

9
dmp-frontend/src/app/core/model/recent-activity/recent-dataset-activity.model.ts Normal file
View File

@ -0,0 +1,9 @@
import { RecentActivityModel } from "./recent-activity.model";
export class RecentDatasetModel extends RecentActivityModel {
dmp: String;
dmpId: String;
dataRepositories: String;
registries: String;
services: String;
}

14
dmp-frontend/src/app/core/model/recent-activity/recent-dmp-activity.model.ts Normal file
View File

@ -0,0 +1,14 @@
import { RecentActivityModel } from './recent-activity.model';
import { RecentDatasetModel } from './recent-dataset-activity.model';
import { DmpAssociatedProfileModel } from '../dmp-profile/dmp-associated-profile';
import { UserInfoListingModel } from '../user/user-info-listing';
import { DatasetUrlListing } from '../dataset/dataset-url-listing';
export class RecentDmpModel extends RecentActivityModel {
doi: String;
extraProperties: Map<String, any>;
datasets: DatasetUrlListing[];
associatedProfiles: DmpAssociatedProfileModel[];
organisations: String;
groupId: string;
}

2
dmp-frontend/src/app/core/model/researcher/researcher.ts
View File

@ -1,5 +1,5 @@
export interface ResearcherModel {
id: String;
id: string;
name: String;
reference: String;
lastName: String;

6
dmp-frontend/src/app/core/model/user/user-listing.ts
View File

@ -5,6 +5,10 @@ export interface UserListingModel {
name: String;
email: string;
appRoles: AppRole[];
additionalinfo: any;
associatedDmps: any[];
language: any;
culture: any;
timezone: String;
zenodoEmail: String;
avatarUrl: String;
}

5
dmp-frontend/src/app/core/model/version/version-listing.model.ts Normal file
View File

@ -0,0 +1,5 @@
export interface VersionListingModel {
id: string;
groupId: string;
version: number;
}

6
dmp-frontend/src/app/core/query/recent-activity/recent-activity-criteria.ts Normal file
View File

@ -0,0 +1,6 @@
import { RecentActivityOrder } from '@app/core/common/enum/recent-activity-order';
import { BaseCriteria } from '../base-criteria';
export class RecentActivityCriteria extends BaseCriteria{
public order: RecentActivityOrder = RecentActivityOrder.MODIFIED;
}

15
dmp-frontend/src/app/core/services/auth/auth.service.ts
View File

@ -48,8 +48,14 @@ export class AuthService extends BaseService {
return principal;
}
const principalJson = localStorage.getItem('principal');
if (!principalJson) { return null; }
const principalObj = JSON.parse(principalJson) as Principal;
if (principalJson === null || principalJson === undefined) {
return null;
}
let principalObj = JSON.parse(principalJson) as Principal;
principalObj.expiresAt = new Date(principalObj.expiresAt);
if (principalObj.expiresAt < new Date()) {
return null;
}
return principalObj;
}
@ -121,7 +127,8 @@ export class AuthService extends BaseService {
}
public me(): Observable<Principal> {
const url = this.actionUrl + '/me';
this.actionUrl = this.configurationService.server + 'auth/';
const url = this.actionUrl + 'me';
const principal = this.current();
if (!principal) {
this.clear();
@ -132,6 +139,8 @@ export class AuthService extends BaseService {
return this.http.post(url, null, { headers: headers }).pipe(
map((res: any) => {
const princ = this.current(res.payload);
princ.expiresAt = new Date(princ.expiresAt);
console.log("Token Expires at: " + princ.expiresAt.toDateString() + ' ' + princ.expiresAt.toLocaleTimeString());
return princ;
}),
catchError((error: any) => {

5
dmp-frontend/src/app/core/services/configuration/configuration.service.ts
View File

@ -71,6 +71,10 @@ export class ConfigurationService extends BaseComponent {
return this._useSplash;
}
private _orcidPath: string;
get orcidPath(): string {
return this._orcidPath;
}
public loadConfiguration(): Promise<any> {
return new Promise((r, e) => {
@ -109,6 +113,7 @@ export class ConfigurationService extends BaseComponent {
this._allowOrganizationCreator = config.allowOrganizationCreator;
this._doiLink = config.doiLink;
this._useSplash = config.useSplash;
this._orcidPath = config.orcidPath;
}
}

11
dmp-frontend/src/app/core/services/dashboard/dashboard.service.ts
View File

@ -5,6 +5,9 @@ import { environment } from '../../../../environments/environment';
import { DashboardStatisticsModel } from '../../model/dashboard/dashboard-statistics-model';
import { BaseHttpService } from '../http/base-http.service';
import { ConfigurationService } from '../configuration/configuration.service';
import { RecentActivityModel } from '@app/core/model/recent-activity/recent-activity.model';
import { RecentActivityCriteria } from '@app/core/query/recent-activity/recent-activity-criteria';
import { DataTableRequest, DataTableMultiTypeRequest } from '@app/core/model/data-table/data-table-request';
@Injectable()
export class DashboardService {
@ -24,4 +27,12 @@ export class DashboardService {
getUserStatistics(): Observable<DashboardStatisticsModel> {
return this.http.get<DashboardStatisticsModel>(this.actionUrl + 'me/getStatistics', { headers: this.headers });
}
getRecentActivity(request: DataTableMultiTypeRequest<RecentActivityCriteria>): Observable<RecentActivityModel[]> {
return this.http.post<RecentActivityModel[]>(this.actionUrl + 'recentActivity', request, {headers: this.headers});
}
// getRecentActivity(request: DataTableRequest<RecentActivityCriteria>): Observable<DataTableData<RecentActivityModel>> {
// return this.http.post<DataTableData<RecentActivityModel>>(this.actionUrl + 'recentActivity', request, {headers: this.headers});
// }
}

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