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1309 Commits

Author SHA1 Message Date
Efstratios Giannopoulos d8b1211a12 Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/controllers/FileController.java
#	dmp-backend/web/src/main/java/eu/eudat/models/data/listingmodels/DataManagementPlanOverviewModel.java
 2023-11-06 16:19:06 +02:00
Efstratios Giannopoulos 81528dfe55 description refactor 2023-11-06 16:17:57 +02:00
amentis 11bb1a3c8c create Supportive Material query public 2023-11-06 15:25:04 +02:00
Thomas Georgios Giannos 9b9cf0de4d Adding dmp-description-template stack 2023-11-06 13:31:01 +02:00
amentis fda8fcef2c create Supportive Material Entity, (persist in progress) 2023-11-03 18:09:19 +02:00
George Kalampokis 7bb8e850e8 Add first implementation of the new Repository Deposit Service 2023-11-03 17:54:26 +02:00
Thomas Georgios Giannos 2f20675348 Adding reference persisting on dmp persist (work in progress), adding separate persist models for dmp properties 2023-11-03 16:02:47 +02:00
Efstratios Giannopoulos 08caf64d02 DescriptionTemplate refactor 2023-11-03 14:53:10 +02:00
amentis c37530c022 add supportive material editor to UI 2023-11-03 13:30:11 +02:00
Efstratios Giannopoulos b6278ab1ef DescriptionTemplate refactor 2023-11-03 11:55:26 +02:00
Efstratios Giannopoulos d38f22ccbf DescriptionTemplate refactor 2023-11-02 18:37:12 +02:00
Thomas Georgios Giannos e02237e599 Adding new version service method for Dmps 2023-11-02 18:12:36 +02:00
Efstratios Giannopoulos 732dfd9bfb DmpBlueprint feractor 2023-11-02 14:13:13 +02:00
Efstratios Giannopoulos ac15e33a87 DescriptionTemplate refactor 2023-11-01 18:12:59 +02:00
Efstratios Giannopoulos 4e08d9f073 DescriptionTemplate refactor 2023-11-01 12:03:23 +02:00
amentis be9761b103 add more fields to reference-type.yml 2023-10-31 17:57:41 +02:00
Efstratios Giannopoulos 7e391582b5 User DescriptionTemplate refactor 2023-10-31 17:24:03 +02:00
Diamantis Tziotzios c08f05bc04 no message 2023-10-31 11:19:52 +02:00
Efstratios Giannopoulos 2b074f268d DescriptionTemplate refactor 2023-10-30 18:02:20 +02:00
amentis 477e4e498e add frontend reference search lookup 2023-10-30 17:53:30 +02:00
amentis f744573f02 add reference search builders, lookup 2023-10-30 17:15:40 +02:00
Efstratios Giannopoulos c06253bb20 DescriptionTemplate refactor 2023-10-30 15:07:59 +02:00
amentis a0ac8df5ba rename sourceType 2023-10-30 10:43:50 +02:00
Diamantis Tziotzios 9201f265d2 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-frontend/src/app/core/model/reference/reference.ts
 2023-10-27 18:59:51 +03:00
Diamantis Tziotzios 7214745162 frontend dmp changes 2023-10-27 18:56:19 +03:00
Efstratios Giannopoulos bdcaee004d Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/core/src/main/java/eu/eudat/audit/AuditableAction.java
#	dmp-backend/web/src/main/resources/config/permissions.yml
 2023-10-27 18:52:34 +03:00
Efstratios Giannopoulos 57facf98e5 DescriptionTemplate refactor 2023-10-27 18:46:34 +03:00
amentis 9d3cc9e3d2 rename sourceType to referenceSourceType 2023-10-27 18:29:06 +03:00
amentis 92c165e904 add references definition xml,builder, persist 2023-10-27 17:35:35 +03:00
Thomas Georgios Giannos 60ca51fe00 Adding DescriptionReference entity stack (former Dataset*** entities) 2023-10-27 11:59:37 +03:00
George Kalampokis d983e1e38e Add Deposit Security 2023-10-26 18:04:55 +03:00
amentis aecac1995d rename External Reference to Reference 2023-10-26 14:38:18 +03:00
amentis f006587f4a Merge remote-tracking branch 'origin/dmp-refactoring' into dmp-refactoring 2023-10-26 12:09:36 +03:00
amentis bbb21fadba rename External Reference to Reference 2023-10-26 12:07:04 +03:00
Diamantis Tziotzios 4eca9b32c9 various backend fixes 2023-10-26 11:21:33 +03:00
Thomas Georgios Giannos 9a78d98751 Updating permissions.yml for dmps, entity_dois and descriptions 2023-10-25 16:55:10 +03:00
amentis 7df098a010 add more to external reference controller, service 2023-10-25 12:42:34 +03:00
Thomas Georgios Giannos 079382556f Added controller for description entity (former dataset) 2023-10-25 11:48:19 +03:00
amentis bf8edfad92 add ExternalReference, DmpExternalReference entities 2023-10-24 18:47:13 +03:00
Efstratios Giannopoulos de566729f1 DmpBlueprint refactor 2023-10-24 18:00:11 +03:00
Efstratios Giannopoulos 167d3d4a4b DmpBlueprint refactor 2023-10-23 18:13:34 +03:00
amentis 10615c6fa9 fix front enums 2023-10-23 17:58:56 +03:00
Efstratios Giannopoulos 3b9b348d4d update External Refence 2023-10-23 16:53:32 +03:00
Efstratios Giannopoulos fe7d6f59b1 DmpBlueprint refacto 2023-10-23 15:58:33 +03:00
Thomas Georgios Giannos f4d84aa807 Implemented controller for dmp entity, dmp lookup update 2023-10-23 14:45:05 +03:00
Diamantis Tziotzios 6a8cb2c853 more frontend dmp blueprint listing changes 2023-10-23 11:58:15 +03:00
Diamantis Tziotzios 6d6a4e0341 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 2023-10-23 11:27:27 +03:00
Diamantis Tziotzios 0c1509a1a1 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/core/src/main/java/eu/eudat/audit/AuditableAction.java
 2023-10-23 11:27:03 +03:00
Efstratios Giannopoulos 6cde8ae2a9 add cross origin config 2023-10-23 11:15:08 +03:00
Efstratios Giannopoulos 3ad7441bb5 DmpBlueprint refactor 2023-10-23 10:21:25 +03:00
Diamantis Tziotzios 3422b147c8 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 2023-10-22 13:34:12 +03:00
Efstratios Giannopoulos 30bff76163 Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/core/src/main/java/eu/eudat/commons/enums/ExternalReferencesType.java
 2023-10-20 19:17:14 +03:00
Efstratios Giannopoulos 88088d64fd DmpBlueprint refactor 2023-10-20 19:13:57 +03:00
Diamantis Tziotzios 9ed94450bd Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 2023-10-20 18:01:15 +03:00
Diamantis Tziotzios 4d3098860d description template type and dmp blueprint frontend changes 2023-10-20 18:01:09 +03:00
amentis 0bd3ff6898 fix external references enums 2023-10-20 17:44:41 +03:00
George Kalampokis 7d4b4c171b Apply some minor fixes 2023-10-20 11:57:25 +03:00
Efstratios Giannopoulos 0b3178177a changes for remote fetcher 2023-10-19 17:56:53 +03:00
Thomas Georgios Giannos 2a4e61f08f Added controller for EntityDoi entity 2023-10-19 17:48:41 +03:00
Thomas Georgios Giannos 727702023f Reverting changes on join DMP <-> EntityDoiEntity for now in order for the app to be able to run 2023-10-19 16:52:41 +03:00
Efstratios Giannopoulos 16604a8a50 bug fixes 2023-10-19 13:01:29 +03:00
Efstratios Giannopoulos a235eb98f4 task #9088 Authorization model should be changed to be Permission based 2023-10-19 10:44:20 +03:00
Efstratios Giannopoulos ce8ff28955 Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/EntityDoiDao.java
#	dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/EntityDoiDaoImpl.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DepositManager.java
 2023-10-18 19:03:35 +03:00
Efstratios Giannopoulos 52e59ac11c task #9088 Authorization model should be changed to be Permission based 2023-10-18 18:52:03 +03:00
George Kalampokis dc752f73ca Partially fix Deposit Logic and add support for upcomming micro-services 2023-10-18 18:15:52 +03:00
amentis 7cba7b2346 add external references service 2023-10-18 18:05:39 +03:00
Thomas Georgios Giannos a38342e534 Removed EntityDao logic, added template stack, controller not yet implemented, db script not yet run 2023-10-18 17:58:36 +03:00
Efstratios Giannopoulos 941f2d69cc Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 2023-10-18 13:54:47 +03:00
Efstratios Giannopoulos 5c17027df2 fix delete user info additional data 2023-10-18 13:54:02 +03:00
amentis 5203ec4b72 fix remote fetcher 2023-10-18 13:53:52 +03:00
Thomas Georgios Giannos b7d22b5b07 Moving existing entities from Data module to Core module 2023-10-18 13:04:53 +03:00
amentis 1cda821d9c fix issue 2023-10-18 13:00:17 +03:00
amentis ad91234fd9 Merge remote-tracking branch 'origin/dmp-refactoring' into dmp-refactoring 2023-10-18 12:28:13 +03:00
amentis 17bb6bd4b0 add Supportive Material 2023-10-18 12:26:57 +03:00
Efstratios Giannopoulos 27bcc31e54 task #9088 Authorization model should be changed to be Permission based 2023-10-18 12:10:24 +03:00
amentis 3dee4857f8 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 
 Conflicts:
	dmp-frontend/src/assets/config/config.json
 2023-10-18 10:33:59 +03:00
amentis f67ada842e commit 2023-10-18 10:31:57 +03:00
Efstratios Giannopoulos 43f77a4497 add status and inactive 2023-10-17 17:48:02 +03:00
Efstratios Giannopoulos b3a73a50aa task #9088 Authorization model should be changed to be Permission based 2023-10-17 17:13:34 +03:00
Diamantis Tziotzios 9fd30b1198 Merge branch 'dmp-refactoring' of https://code-repo.d4science.org/MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/core/pom.xml
 2023-10-17 15:56:28 +03:00
Diamantis Tziotzios 3eaf326c50 Description Template Types backend refactored to new format. 2023-10-17 15:55:00 +03:00
Efstratios Giannopoulos 7ed111e936 task #9088 Authorization model should be changed to be Permission based 2023-10-17 15:22:05 +03:00
Efstratios Giannopoulos bd2807fbdf remove zenodo from user info 2023-10-17 12:40:47 +03:00
Efstratios Giannopoulos 925f195f5a database enum handle implementation 2023-10-17 12:39:29 +03:00
Efstratios Giannopoulos 6443654343 Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 2023-10-16 17:39:19 +03:00
Efstratios Giannopoulos 191f887530 database enum handle implementation 2023-10-16 17:38:12 +03:00
Thomas Georgios Giannos b537810406 Removed redundant code that calculated count on queries, already implemented on the data tools package 2023-10-16 12:22:41 +03:00
Thomas Georgios Giannos 234aa359c0 Removed redundant code that calculated count on queries, already implemented on the data tools package 2023-10-16 12:21:58 +03:00
Efstratios Giannopoulos d5c62539c5 task #9086 public urls support 2023-10-13 18:11:46 +03:00
George Kalampokis 5976084473 Fix security on LanguageController 2023-10-13 16:46:38 +03:00
George Kalampokis a9a3273f62 Fix compilation errors and fix swagger ui description formatting 2023-10-13 09:50:22 +03:00
Efstratios Giannopoulos 5009d658ed task #9045 Refactor authentication mechanism to support using Keycloak 2023-10-12 16:16:19 +03:00
Efstratios Giannopoulos 055d29b95f Merge branch 'dmp-refactoring' of code-repo.d4science.org:MaDgiK-CITE/argos into dmp-refactoring 
# Conflicts:
#	dmp-backend/web/pom.xml
#	dmp-backend/web/src/main/resources/config/application.yml
 2023-10-12 12:04:26 +03:00
George Kalampokis b845450ebd Update Swagger ui 2023-10-12 10:55:48 +03:00
Efstratios Giannopoulos 968f45d5b3 authn refactor 2023-10-11 17:53:12 +03:00
Efstratios Giannopoulos 8b05ee1d0f add cache yml 2023-10-11 10:09:46 +03:00
George Kalampokis de2f5e67fd Fix profile issue 2023-10-11 09:53:24 +03:00
George Kalampokis 755c79b7af Separate configuration to different files 2023-10-10 16:49:48 +03:00
George Kalampokis 166bea73bf Replace the old .properties configuration files with the .yml 2023-10-09 16:02:14 +03:00
Thomas Georgios Giannos 55aecd9c57 Updating description template type controller with apropriate auditing and logging, added censor, refactored query building to conform with other projects workflows 2023-10-09 11:17:16 +03:00
George Kalampokis cab2f1bc64 Add Environment variables 2023-10-09 10:38:46 +03:00
George Kalampokis b5cbe6a3d8 Merge remote-tracking branch 'origin/dmp-refactoring' into dmp-refactoring 2023-10-06 18:11:11 +03:00
George Kalampokis 70308db668 Add Authentication support for the remote fetcher and rework dataset template's autocomplete sources 2023-10-06 18:07:58 +03:00
Thomas Georgios Giannos c7778e80b9 Adding missing auditing configuration property 2023-10-06 15:22:38 +03:00
Thomas Georgios Giannos 0b901205ee Adding auditing, naming convention change in API endpoints for description types 2023-10-06 12:13:09 +03:00
Diamantis Tziotzios 66052f8af6 sync fixes 2023-10-05 14:12:39 +03:00
Bernaldo Mihasi b7f68f1a7e bug fixes 
(cherry picked from commit 846405435c)
 2023-10-05 14:04:26 +03:00
Bernaldo Mihasi 03f2bc862e 1) update dmp blueprint listing table view, 2) create clone functionality for dmp blueprints, 3) section description is not required in editor, 4) in the deletion of a dmp blueprint check if any dmps are accosiated with it 2023-10-05 14:04:10 +03:00
Bernaldo Mihasi 4373bf4b00 bug fixes: 1) when creating description template type check only for non deleted types, 2) dmp docx/pdf export: check if system fields exist 3) when creating/updating dmp check if value for extra fields is set, 4) when unchecking the 'Description Templates' checkbox in the blueprint editor, clear any templates selected 2023-10-05 14:02:20 +03:00
Bernaldo Mihasi 09dcf5328d add type attribute in xml import/export of a description template 
(cherry picked from commit 3d10e8ad28)
 2023-10-05 14:00:30 +03:00
Bernaldo Mihasi 94c0f7ac9c [wip] dmp xml upload changes, including section and extra fields information 2023-10-05 14:00:17 +03:00
Thomas Georgios Giannos 3f14528f16 Fixing UI incompatibilities 2023-10-05 11:41:11 +03:00
Thomas Georgios Giannos 074e374d9a Removing old implementation of DescriptionTemplateType entity, fixing issues with entity scanning and field resolving on new implementation 2023-10-04 12:46:06 +03:00
Thomas Georgios Giannos 7c96078570 Updating Spring to version 6, adding service stack for DescriptionType entity 2023-10-03 17:29:45 +03:00
Bernaldo Mihasi 6b544e4702 bug fixes 2023-09-27 16:57:25 +03:00
Bernaldo Mihasi 2f4e123ac9 bug fixes 2023-09-27 12:54:18 +03:00
Bernaldo Mihasi c99267d6cc #8998 - implement import/export functionality for dmp blueprints 2023-09-26 09:35:59 +03:00
Bernaldo Mihasi 34580f917f check if grant exists in word/pdf export 2023-09-22 12:57:47 +03:00
Bernaldo Mihasi beac6be706 add missing grant checks 2023-09-22 09:31:12 +03:00
Bernaldo Mihasi fbad63ee76 use dmp label in export file names if grant does not exist 2023-09-22 09:29:51 +03:00
Bernaldo Mihasi 79aaf23bb6 add missing grant checks 2023-09-21 10:20:32 +03:00
Bernaldo Mihasi db08662cac fix bug when creating new version or clone a dmp 2023-09-21 09:33:27 +03:00
Bernaldo Mihasi 367861c050 fix bugs: saving extra fields in dmp, showing draft blueprints when min or max of a description template are not set 2023-09-20 09:34:39 +03:00
Bernaldo Mihasi 93c5918251 make grant funder not mandatory for the creation/new version/clone of dmp 2023-09-18 17:48:54 +03:00
Bernaldo Mihasi b1a832074d small fixes, (wip) remove description template chip from dmp editor 2023-09-13 15:55:38 +03:00
Diamantis Tziotzios cf6e041154 Merge remote-tracking branch 'origin/refactorArgosModel' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/models/rda/mapper/DatasetRDAMapper.java
#	dmp-frontend/src/app/ui/dashboard/drafts/drafts.component.html
 2023-09-13 10:01:57 +03:00
Bernaldo Mihasi 6154a5fa51 fix associated dmps bugs in DMP table, new/existing DmpDatasetProfile entries were not saved/updated 2023-09-12 15:36:06 +03:00
Bernaldo Mihasi bbe4975176 add hasTemplates property to sections, it indicates if descriptions templates can be added in a section 2023-09-11 08:59:47 +03:00
Bernaldo Mihasi 4219d90039 add "DmpSectionIndex" column to descriptions in order to know in which section of a dmp the description belongs, add "data" column in DmpDatasetProfile table, data stores in which sections a description template is saved 2023-09-11 08:57:09 +03:00
Bernaldo Mihasi 6073c4cd85 [WIP] refactor dmp export following the blueprint schema 2023-09-11 08:42:30 +03:00
Bernaldo Mihasi cd80e78e40 add status to description template types, fix bugs in editor/listing 2023-09-11 08:40:03 +03:00
George Kalampokis 5019bc4271 Add manual addition of total users in prometheus 2023-08-04 11:55:46 +03:00
Bernaldo Mihasi 78946de1b5 change images source in emails to base64 
(cherry picked from commit b94aa51489)
 2023-08-03 13:26:27 +03:00
Bernaldo Mihasi 17dbd198ad fix dmp blueprint editor screen 2023-08-03 13:10:36 +03:00
Bernaldo Mihasi b94aa51489 change images source in emails to base64 2023-08-03 11:19:33 +03:00
Diamantis Tziotzios b6cade6e88 metrics change 
(cherry picked from commit 903026e2c2)
 2023-08-03 10:28:56 +03:00
Diamantis Tziotzios 903026e2c2 metrics change 2023-08-03 10:28:18 +03:00
Bernaldo Mihasi 30abe4d4c9 #8952 - fix bug when merging two accounts did not have consistent behaviour. 2023-08-01 11:23:06 +03:00
Bernaldo Mihasi 634d49ea35 #8916 - when merging acoounts, save the main profile user as collaborator to elastic dmps/datasets 2023-07-27 10:07:40 +03:00
Bernaldo Mihasi e01709f886 #8936 - fix bug when pid of object fetched was integer(PIC typed) instead of string 2023-07-27 10:06:04 +03:00
Bernaldo Mihasi 09d6528f8f #8855 - #8856 - #8901 - #8902 [wip] implementing dmp blueprints 2023-07-25 15:51:29 +03:00
Bernaldo Mihasi 128b47d9c3 #8845 - #8846: adding description template types, creation of description template type field in the dataset template editor, [wip] creation of admin page for creation/editing/deleting of description template types 2023-07-25 15:27:15 +03:00
Bernaldo Mihasi bc279b1610 #8843 - 1. refactor the DatasetProfile Table to DescriptionTemplate name 2. add scripts for the new DescriptionTemplateType table 3. update english localization + frontend 2023-07-25 15:04:39 +03:00
Bernaldo Mihasi 3fc307c831 #8912: adding new metadata/registries api in the configs 2023-07-21 17:04:41 +03:00
Bernaldo Mihasi ee90ac37b6 no message 2023-07-20 13:34:56 +03:00
Bernaldo Mihasi 0918e55ac9 fix bug in dataset template editor when a field is an admin-input api and couldn't fetch results 2023-07-20 13:07:05 +03:00
Bernaldo Mihasi 2db9ea613f catch error in prefilling when source mapping does not exist in the api's response 2023-07-20 13:00:24 +03:00
Konstantina Galouni e878310b72 #8834: Home page: Drafts query for both Datasets and DMPs. 
1. RecentActivityCriteria.java: Added in RecentActivityCriteria field "private Integer status;", to be able to get only drafts.
2. DashBoardManager.java: In method "getNewRecentActivity()", add in Dataset and DMP requests status in criteria.
 2023-07-17 18:10:49 +03:00
Bernaldo Mihasi dd6a2a0df7 adding key property in the prefilling model as the identifier of the prefilling repository 2023-07-17 10:29:06 +03:00
Bernaldo Mihasi 1715463422 fix bugs in rda json export when rda semantics don't correspond to valid dataset field input type 2023-07-14 13:56:08 +03:00