MaDgiK-CITE
/
argos
13
0
Fork 0
Code Issues Pull Requests Projects Releases 3 Wiki Activity
3,549 Commits 37 Branches 247 Tags 110 MiB
Commit Graph

1375 Commits

Author SHA1 Message Date
Konstantina Galouni 28c1c9b71d h2020.docx & WordBuilder.java: Updated h2020.docx DMP template and added export of DMP description. 2023-02-28 11:01:44 +02:00
Bernaldo Mihasi e2505039df cleanup unused code 2023-02-21 14:09:33 +02:00
Bernaldo Mihasi b273ca4ed7 search for schematics fields in prefilling 2023-02-21 12:44:48 +02:00
Bernaldo Mihasi 0c57bba0b4 rda json dmp import/export 2023-02-21 11:57:34 +02:00
Bernaldo Mihasi 9a8fc5e92e schematics implementation, xml import export of dataset profiles 2023-02-21 11:46:44 +02:00
Bernaldo Mihasi e22e348330 cleanup unused code 2023-02-21 11:41:07 +02:00
Bernaldo Mihasi ab124e87ea add new filters(grantLike, funderLike, collaboratorsLike) 2023-02-14 12:16:11 +02:00
Bernaldo Mihasi 57a400f817 update repository base version 2023-01-18 09:37:34 +02:00
Bernaldo Mihasi 030f1ccf8e add repository logo 2023-01-17 14:41:04 +02:00
Diamantis Tziotzios 95c9d599e1 pom update 2023-01-17 10:31:34 +02:00
Diamantis Tziotzios 4dccaa93b8 Merge branch 'multipleRepos' into Development 2023-01-16 14:11:43 +02:00
Bernaldo Mihasi 66b2596036 delete files used for deposit in tmp storage 2022-12-27 09:44:43 +02:00
Bernaldo Mihasi 749dbefc38 1. return bad request when deposition failed and returned null 
2. close modal with repositories after a successful deposition
 2022-12-19 16:07:03 +02:00
Bernaldo Mihasi 80fba7c655 Merge branch 'multipleRepos' of https://code-repo.d4science.org/MaDgiK-CITE/argos into multipleRepos 2022-12-13 11:00:27 +02:00
Bernaldo Mihasi fbc274282c fix deposit base dependancy in web 2022-12-13 10:55:32 +02:00
Diamantis Tziotzios ec985bf271 Dockerfile update 2022-12-13 10:46:36 +02:00
Bernaldo Mihasi d0cde3c4c4 cleanup deposit since they are moved in another git repository 2022-12-13 10:12:12 +02:00
Bernaldo Mihasi 39d709f41d no message 2022-12-13 09:46:00 +02:00
Bernaldo Mihasi c6d37806c8 drop column doi from dmp and refactor code(replace single doi with list of dois) 2022-12-08 13:12:54 +02:00
Bernaldo Mihasi 8c95b16164 add temp storage in zenodo repository 2022-12-08 13:06:52 +02:00
Bernaldo Mihasi ad00695d4e fix bug allowing invalid characters in pdf name 2022-12-08 13:04:55 +02:00
Bernaldo Mihasi 572be373e5 don't deposit empty supportingFiles.zip when no files are uploaded in datasets 2022-12-08 13:02:08 +02:00
Diamantis Tziotzios e1a3e9b7bc Dockerfile update 2022-12-06 11:55:06 +02:00
Bernaldo Mihasi b7e69d5fdf repo config using enviroment variables instead of static strings 2022-12-06 11:50:54 +02:00
George Kalampokis 6caef3e890 Remove thread sleeps when trying to load config files and removed principal from Exception Handling Controller 2022-11-30 18:19:40 +02:00
Bernaldo Mihasi 679354f699 deposit datasets' attached files in zip format 2022-11-30 09:43:03 +02:00
Konstantinos Triantafyllou c9c99be603 Merge branch 'table-field' into Development 2022-11-29 10:19:15 +02:00
Diamantis Tziotzios 75007286fc elasticsearch cert change 2022-11-25 17:03:25 +02:00
Diamantis Tziotzios ccc102a52d add more elastic logs 2022-11-25 16:03:59 +02:00
Bernaldo Mihasi ed79d27cdc when making a new version in dataverse delete previous files 2022-11-25 11:20:45 +02:00
Bernaldo Mihasi da211ca756 update dockerfile to include directory with repository jars 2022-11-24 17:31:16 +02:00
Bernaldo Mihasi 7a0e1c89f2 when finalizing a dmp and its access rights are open, make it publicly available in Argos 2022-11-24 16:29:11 +02:00
Bernaldo Mihasi 573aab059b remove redundant parameter in deposit interface 2022-11-22 09:58:47 +02:00
Bernaldo Mihasi 5e2639848b dmps are deposited in dataverse as datasets under a parent predefined dataverse collenction 
when a new dmp version is created and deposited, the corresponding dataset in dataverse/collection in zenodo create a new version too
deposit dmps as published not drafts
 2022-11-22 09:40:05 +02:00
George Kalampokis 0888b7cd74 Enable health and metrics built-in endpoints 2022-11-21 14:06:59 +02:00
Bernaldo Mihasi 6c13d3b68f when new version is deposited, create dataset in existing dataverse 2022-11-14 09:34:49 +02:00
Konstantinos Triantafyllou 925fc3ce4a Merge branch 'Development' into table-field 2022-11-10 17:54:28 +02:00
Bernaldo Mihasi b4490cb0f3 [WIP] implement dataverse repository deposit 2022-11-10 10:12:11 +02:00
Konstantina Galouni 2bbf89e779 HtmlToWorldBuilder.java & WordBuilder.java: Added methods for exporting inputs of a question as table. 2022-11-08 14:39:23 +02:00
Diamantis Tziotzios 0cd20605f0 user guide image update 2022-11-02 15:39:42 +02:00
Bernaldo Mihasi 6b2bc3c1e0 cleanup code, add authorizationUrl and recordUrl in repositories config 2022-11-02 13:31:42 +02:00
Bernaldo Mihasi 59e26dbb8d [WIP] EntityDoi table 2022-11-02 09:41:40 +02:00
Konstantina Galouni 37724380e9 #7276 - Added tableView true/false option in multiplicity 2022-11-01 16:24:28 +02:00
Bernaldo Mihasi 7d624a2daa [WIP] system deposit authentication, using default repo token 2022-10-27 09:32:26 +03:00
Bernaldo Mihasi ab66a5f1da [WIP] implement zenodo repository deposit, add authentication for depositions 2022-10-26 13:50:01 +03:00
Bernaldo Mihasi 7dd2030eb3 [WIP] create deposit interface and implement multiple deposit repositories 2022-10-24 09:35:49 +03:00
Bernaldo Mihasi 20f618a5d7 fix request body examples in publicapi 2022-10-18 09:39:46 +03:00
Bernaldo Mihasi 2b692fa579 fix public api paths 2022-10-10 11:56:48 +03:00
Bernaldo Mihasi ef327a0a57 expose public api 2022-10-04 13:06:49 +03:00
Bernaldo Mihasi 5087a37e15 dockerization 2022-09-13 10:35:56 +03:00
Konstantina Galouni 49e42e9cba h2020_dataset.docx & WordBuilder.java & DataManagementPlanManager.java & DatasetManager.java: Updated footer of Dataset template to set title of DMP and Dataset. 2022-07-28 17:30:44 +03:00
George Kalampokis fa723c07ae Fix critical issue with open file handle leak on user guide folder 2022-07-28 11:23:39 +03:00
Konstantina Galouni a2228a5fb6 #7597, #7893, #7895, #7898: Updated DMP template file (h2020.docx) for export | Added Dataset template file (h2020_dataset.docx) for export | Updated indentation on exported docs. 
1. h2020.docx, h2020_dataset.docx: Updated DMP template & Added Dataset template.
2. application.properties, application-devel.properties, application-production.properties, application-staging.properties: Added property for dataset template file path configuration.h2020datasettemplate=documents/h2020_dataset.docx
3. ConfigLoader.java: Added method XWPFDocument getDatasetDocument();
4. DefaultConfigLoader.java: Added fiedls and methods for loading Dataset template (h2020_dataset.docx).
5. DataManagementPlanManager.java, DatasetManager.java, , HtmlToWorldBuilder.java, WordBuilder.java: Updated header/footer/first page in exports for DMPs and Datasets  | Updated indentation in exports.
 2022-07-26 17:00:54 +03:00
Konstantina Galouni 9b4c7aeb6f DataManagementPlanManager.java: #7893 - Added description of Datasets on DMP exported word file. 2022-07-12 12:52:04 +03:00
Konstantinos Triantafyllou 304a6cfdb3 Backend: Fix a bug with compareTo of a field throwing an error because ordinal is not exists. FrontEnd: Initialize visibility rules for multiple fields coming from service according to their parents. 2022-06-23 15:38:48 +03:00
Konstantina Galouni 18e98938d5 WordBuilder.java: #7869 - In exported file fix hidden question title and a. /b. /c for empty answers. 
a. fix hidden question title when more than 1 multiplicity answers,
b. fix hidden question title when  no value in the last multiplicity answer,
c. Do not show a. / b. / c.... for empty multiplicity answers,
d. Do not show a. / b. / c.... when more than 1 multiplicity answers, but only one with value.
 2022-06-23 15:32:05 +03:00
Diamantis Tziotzios 2ecce0acb0 elastic conf changes 2022-06-14 14:22:59 +03:00
Bernaldo Mihasi 8b26ff19b6 Merge branch 'Development' of https://code-repo.d4science.org/MaDgiK-CITE/argos into Development 2022-06-14 10:25:53 +03:00
Bernaldo Mihasi 9c4d246ef5 heading changes on export template 2022-06-14 10:24:35 +03:00
Konstantina Galouni 772a041851 WordBuilder.java: #7837 - In exported file add comment filed as ParagraphStyle.HTML instead of ParagraphStyle.COMMENT. 2022-06-14 10:14:48 +03:00
Bernaldo Mihasi 0ac5902bfd 1. export redesign based on new word template 
2. orcid researchers in export are clickable
 2022-06-13 15:16:48 +03:00
Bernaldo Mihasi 73be5d9a98 1. export redesign: multiplicity #ref 7834, multiple select #ref 7836 
2. fix bug in license api export
 2022-06-08 16:27:47 +03:00
Bernaldo Mihasi 3433f58506 Add ssl support for elasticsearch 2022-06-08 16:23:49 +03:00
George Kalampokis 0235406246 Improve image caption styling 2022-06-07 14:52:48 +03:00
George Kalampokis 7985b13cca Add image caption on Word/Pdf export 2022-06-07 13:10:06 +03:00
George Kalampokis 54c5017609 Add Export attribute on Dataset Profile's Field. By Default is set to true. The attribute determines if the field value will be included in the word/pdf export 2022-06-07 11:00:13 +03:00
George Kalampokis 5cd79a6368 When Exporting DMP to word/pdf sort it's Datasets based on creation date 2022-06-07 10:56:44 +03:00
George Kalampokis ea8407eece Fix critical issue when uploading Dataset Template 2022-06-07 10:33:37 +03:00
Diamantis Tziotzios 91566c9710 Merge branch 'saml2' into Development 2022-06-01 10:45:19 +03:00
Konstantina Galouni 79bc95b099 [Bug fix] DatasetProfileManager.java: In method "createNewVersionDatasetProfile()", do not set label and language from oldDatasetProfile. 2022-05-31 16:51:59 +03:00
George Kalampokis e8a87765ee Fix authorization issue with Dataset Templates not showing to their original creators (that are not Admins) 2022-05-31 16:14:25 +03:00
argirok 03f7afede8 update openaire publication API to accept DOI query 2022-05-30 16:15:16 +03:00
George Kalampokis 11b0db21ac Reconfigure Zenodo prefilling query in order to query doi and conceptdoi alongside the title (ref #7802) 2022-05-30 11:59:49 +03:00
George Kalampokis 757b1f70e8 Change default filterType to remote (ref #7799 & #7800) 2022-05-26 15:03:45 +03:00
George Kalampokis 66511d2ed6 Further stability improvement over external urls query 2022-05-25 18:06:54 +03:00
George Kalampokis 0f4b209427 Add {query} field for external urls with configurable queries and make ORCID query more strict (similar to orcid's website) (ref #7798) 2022-05-25 17:37:20 +03:00
George Kalampokis 3aff6ac90e Allow to update Dataset Templates by uploading dataset Template .xml files (ref #7793) 2022-05-25 14:50:00 +03:00
Bernaldo Mihasi ff6d068ddd sign artifact resolve-code + post binding 2022-05-25 10:30:59 +03:00
George Kalampokis 912a3cc095 Order datasets on DMP listing (ref #7746) 2022-05-11 18:13:35 +03:00
Bernaldo Mihasi 6c36253f09 artifact binding + decryption of assertion 2022-05-11 10:38:10 +03:00
Bernaldo Mihasi cfd0707f2a bug fix: license api-fields didnt get prefilled 2022-05-04 11:11:25 +03:00
Bernaldo Mihasi 8ac8f9588c #7680: Support SAML Authentication 2022-04-28 12:03:01 +03:00
George Kalampokis 7c933d9f32 Refactor Zenodo deposit creation. Add model for mapping instead of relying on stringBuilder 2022-04-07 17:31:45 +03:00
George Kalampokis e373baee7e Fix critical issue when importing from xml with researchers 2022-04-07 17:31:44 +03:00
George Kalampokis 2a12f1b5be Change Dataset sorting on DMP overview and editor from last modified to last created 2022-04-05 15:29:36 +03:00
George Kalampokis ef6e3b8d7c Sort Datasets by Modified date on DMP Overview and DMP Editor 2022-04-01 13:54:13 +03:00
Bernaldo Mihasi 7cfedf24a2 add missing enums to render styles 2022-03-31 17:49:33 +03:00
Bernaldo Mihasi db8f10ac1e fix issue with upload field in xml export 2022-03-31 17:02:27 +03:00
George Kalampokis afb0be5b18 Make DMP export to be more consistent with the DMP shown on the front end UI 2022-03-29 15:13:58 +03:00
George Kalampokis c41c89774b Make Dataset Validation checker to no longer be exception depedant 2022-03-29 15:13:58 +03:00
George Kalampokis 3eb27c04f6 Fix critical issue with xml import 2022-03-29 11:32:52 +03:00
George Kalampokis 72507dd1b8 Fix issue with DMP json export if it have been imported from json 2022-03-29 10:57:06 +03:00
argirok 35ea0b5d6c Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 2022-03-29 10:32:39 +03:00
Konstantina Galouni 650e0ceb06 #7636: [Bug fix] Copy dataset from latest activity or dataset listing: Reverting some changes from commit:b6c28be3b3 
1. DatasetListingModel.java: Added  field DatasetProfileOverviewModel profile, getter/setter and set profile in methods "fromDataModel()" and "toDataModel()".
2. RecentActivityModel.java: Added field DatasetProfileOverviewModel profile and getter/setter.
3. RecentDatasetModel.java: Set profile in methods "fromEntity()" and "fromDmpEntity()".
 2022-03-28 17:02:57 +03:00
Bernaldo Mihasi 78895a1df1 no message 2022-03-24 09:43:13 +02:00
argirok 62b60b93a8 URLConfiguration add FilterType. When filterType is "local" the filtering is applied in argos backend - not throught the API 2022-03-23 16:03:42 +02:00
George Kalampokis 864b4bfec8 Make rda mapping more lax 2022-03-22 16:40:51 +02:00
Bernaldo Mihasi 116f9b99ea fix tags - distribution_format word export 2022-03-22 14:03:22 +02:00
Konstantina Galouni 8734d7c1ba #7528: Fixes in exporting images to document. 
WordBuilder.java: Use media types instead of file extension for IMAGE_TYPE_MAP | Calculate image dimensions inside document according to its initial ratio and remove from page size the top, bottom, left, right margins.
 2022-03-21 18:19:51 +02:00
Bernaldo Mihasi ba55881830 image export: pixels to points 2022-03-18 16:55:41 +02:00
George Kalampokis 3101cf0e42 Optimize image export 2022-03-17 17:08:45 +02:00
Bernaldo Mihasi 65b4e58aad attach images in word export 2022-03-17 10:47:50 +02:00
Konstantina Galouni 2a9d8b8296 #7528: [NEW] Upload files field type. 
1. Datasets.java: In "delete()" method, call also fileManager.markAllFilesOfEntityIdAsDeleted.
2. DatasetManager.java: Added method "deleteOldFilesAndAddNew()" which is called by "createOrUpdate()", to mark as deleted files that are not used any more and save the new ones.
3. DatabaseRepository.java & DatabaseRepositoryImpl.java: Include in DAOs FileUploadDAO.
4. ModelBuilder.java & ViewStyle.java: Incluse "upload" field type.
5. field-data.ts:
	a. In "getOrdinal()" method return Integer instead of int.
	b. In "getValidations()" method added null check.
	c. In methods "fromJsonObject()" and "toMap()" added special if clauses for "upload" field type.
6. application.properties:
   a. Added property "file.storage", to set the folder where the files will be permanently saved.
   b. Changed default spring.servlet.multipart.max-file-size and pring.servlet.multipart.max-request-size to 10 MB.
7. UserInvitationController.java: Deleted a print in System.out.
8. New files for upload field type: FileUploadDao.java, FileUploadDaoImpl.java, FileUpload.java, PostgreSQLEnumType.java (necessary for the enum EntityType), FileController.java, FileManager.java, UploadData.java.
 2022-03-16 12:14:08 +02:00
George Kalampokis dc06ba9201 Allow to return DMP with no Datasets for the Dataset Editor 2022-03-15 17:58:01 +02:00
George Kalampokis 4e0402df95 Fix issue with prefilling Mapper and empty array values 2022-03-15 17:55:40 +02:00
George Kalampokis 563711eae4 Fix issue saving tags from template when the field is a textField 2022-03-15 17:52:58 +02:00
George Kalampokis d3a1e85ba9 Fix issue with keeping non Admin users on Dataset Templates 2022-03-08 13:37:26 +02:00
George Kalampokis 56499223cf Fix issue with Grant authentication 2022-03-02 17:51:41 +02:00
George Kalampokis 75fc8a1d13 Update some entities based on the Db configuration 2022-03-02 17:51:17 +02:00
George Kalampokis 608c4f3fc0 Add get Parent values on json Searcher 2022-03-02 10:56:28 +02:00
George Kalampokis 5ea8b9b964 Minor fix for visibility Rules Service 2022-03-01 17:14:02 +02:00
George Kalampokis 1e572b3214 Fix issue with prefilling mapping 2022-03-01 17:11:14 +02:00
George Kalampokis ea72f64ed4 Replace DB DOIFunder with a json config file 2022-03-01 14:37:49 +02:00
George Kalampokis c3aff92cd4 Don't include Funder if it's not in the Doi Funder Table 2022-02-28 16:28:31 +02:00
George Kalampokis 5a3f871c58 Remove various unnecessary info messages 2022-02-28 15:24:10 +02:00
George Kalampokis 93aa2d36e5 Fix another issue with login 2022-02-24 10:47:12 +02:00
George Kalampokis 69a94fa236 Make email nullable field 2022-02-23 12:02:03 +02:00
George Kalampokis 94a225cf9f Add Description on Dataset Export 2022-02-22 16:39:35 +02:00
Bernaldo Mihasi 494ee47620 zenodo prefilling customizations 2022-02-22 15:53:25 +02:00
George Kalampokis 3c42ee3531 Improve tags pre-filling mapping 2022-02-22 14:15:51 +02:00
Bernaldo Mihasi 0bd08c2fac fixed tag prefilling 2022-02-22 14:00:22 +02:00
George Kalampokis 817ee9b44d Fixed ParsedTags 2022-02-22 13:39:52 +02:00
George Kalampokis f6cb4a40d2 Generalized (again) dataset prefilling 2022-02-22 11:58:39 +02:00
George Kalampokis d1eab0d019 Fix issue with not showing datasets on all version listing 2022-02-22 11:30:22 +02:00
George Kalampokis 4bdb27fcef Merge remote-tracking branch 'origin/Development' into Development 2022-02-21 17:48:52 +02:00
George Kalampokis ad8239ca5e Improve if statement on Prefilling Mapping 2022-02-21 17:48:40 +02:00
Bernaldo Mihasi 1a43c28496 add more prefilled fields 2022-02-21 17:38:16 +02:00
George Kalampokis b6c28be3b3 Optimize Dashboard's recent activity logic, removed various unused fields from Listing Models and implement toDataModel conversion logic in some models 2022-02-21 17:16:32 +02:00
George Kalampokis 71b1010ea1 Merge remote-tracking branch 'origin/Development' into Development 2022-02-18 17:52:04 +02:00
George Kalampokis d16e130dc6 Optimize general metric counter 2022-02-18 17:51:57 +02:00
George Kalampokis 11ff99fd77 Improve and generalize prefilling logic 2022-02-18 17:51:32 +02:00
argirok 3aa1c1ae59 fix issue with pub api #7326#note-5 the value was a number instaed of search 2022-02-18 17:41:33 +02:00
argirok cc926970ca Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 
 Conflicts:
	dmp-frontend/src/app/ui/admin/dataset-profile/editor/components/field/dataset-profile-editor-field.component.ts
 2022-02-18 17:09:34 +02:00
Bernaldo Mihasi da5ba952e1 rda export import tag bug, format preffiling fixed 2022-02-17 10:11:34 +02:00
Bernaldo Mihasi bf77a85acb Merge branch 'Development' of https://code-repo.d4science.org/MaDgiK-CITE/argos into Development 2022-02-11 13:11:40 +02:00
Bernaldo Mihasi eedcf0dfb0 fix freetext-format bug in prefilling temporarily 2022-02-11 13:09:29 +02:00
George Kalampokis fac6a93c0a Fix minor worldBuilder issue and a minor refactor 2022-02-10 13:21:21 +02:00
George Kalampokis 4740fbe8e0 Refactor visibilityRuleService 2022-02-09 15:23:16 +02:00
Konstantinos Triantafyllou 26e10b1299 Add URL Validator type in validators. Free Text can have URL validator. 2022-02-08 14:31:36 +02:00
Bernaldo Mihasi 80e5e12f29 fix export-import dataset missing rda mappings 2022-02-08 14:04:26 +02:00
Bernaldo Mihasi 815fc05af6 fix missing section titles from word export 2022-02-08 09:44:55 +02:00
Diamantis Tziotzios 14550e0536 visibility rule fix on word builder 2022-02-04 18:17:51 +02:00
Diamantis Tziotzios 2b71cddc39 Fix for word generator not merging multiple visibility rule results 2022-02-04 16:38:05 +02:00
argirok 938f98100f Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 2022-02-04 10:05:32 +02:00
Bernaldo Mihasi 048189952c format prefilling fixes 2022-02-02 14:15:33 +02:00
George Kalampokis eaa0c67177 Add multiplicity field on Sections 2022-01-31 11:15:23 +02:00
Diamantis Tziotzios 1c318ddff5 dataset templates metric renamed 2022-01-28 16:02:07 +02:00
Bernaldo Mihasi 125a97baed keyword-tags exported-imported fixes, prefilling more mapping 2022-01-28 14:55:52 +02:00
George Kalampokis 70d37cead1 Fix wrong metrics count for Dataset Template 2022-01-27 11:05:40 +02:00
argirok 90b49194ac Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 2022-01-24 12:11:39 +02:00