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603 Commits

Author SHA1 Message Date
Bernaldo Mihasi b6b7a2444c add xml attributes in dmp xml export 2023-03-30 11:44:00 +03:00
Bernaldo Mihasi 18ccb3ca0c changes in dmp deposit model 2023-03-27 15:24:50 +03:00
Bernaldo Mihasi a90f21b6aa fix issues in dmp xml export 2023-03-27 15:21:12 +03:00
Bernaldo Mihasi 969df0357a migrate rda properties in dataset profiles definitions in db to schematics 2023-03-27 14:58:45 +03:00
Bernaldo Mihasi e2505039df cleanup unused code 2023-02-21 14:09:33 +02:00
Bernaldo Mihasi 0c57bba0b4 rda json dmp import/export 2023-02-21 11:57:34 +02:00
Bernaldo Mihasi 9a8fc5e92e schematics implementation, xml import export of dataset profiles 2023-02-21 11:46:44 +02:00
Bernaldo Mihasi e22e348330 cleanup unused code 2023-02-21 11:41:07 +02:00
Bernaldo Mihasi 030f1ccf8e add repository logo 2023-01-17 14:41:04 +02:00
Bernaldo Mihasi 66b2596036 delete files used for deposit in tmp storage 2022-12-27 09:44:43 +02:00
Bernaldo Mihasi 749dbefc38 1. return bad request when deposition failed and returned null 
2. close modal with repositories after a successful deposition
 2022-12-19 16:07:03 +02:00
Bernaldo Mihasi 39d709f41d no message 2022-12-13 09:46:00 +02:00
Bernaldo Mihasi c6d37806c8 drop column doi from dmp and refactor code(replace single doi with list of dois) 2022-12-08 13:12:54 +02:00
Bernaldo Mihasi ad00695d4e fix bug allowing invalid characters in pdf name 2022-12-08 13:04:55 +02:00
Bernaldo Mihasi 572be373e5 don't deposit empty supportingFiles.zip when no files are uploaded in datasets 2022-12-08 13:02:08 +02:00
Bernaldo Mihasi 679354f699 deposit datasets' attached files in zip format 2022-11-30 09:43:03 +02:00
Bernaldo Mihasi 7a0e1c89f2 when finalizing a dmp and its access rights are open, make it publicly available in Argos 2022-11-24 16:29:11 +02:00
Bernaldo Mihasi 573aab059b remove redundant parameter in deposit interface 2022-11-22 09:58:47 +02:00
Bernaldo Mihasi 5e2639848b dmps are deposited in dataverse as datasets under a parent predefined dataverse collenction 
when a new dmp version is created and deposited, the corresponding dataset in dataverse/collection in zenodo create a new version too
deposit dmps as published not drafts
 2022-11-22 09:40:05 +02:00
Bernaldo Mihasi b4490cb0f3 [WIP] implement dataverse repository deposit 2022-11-10 10:12:11 +02:00
Bernaldo Mihasi 6b2bc3c1e0 cleanup code, add authorizationUrl and recordUrl in repositories config 2022-11-02 13:31:42 +02:00
Bernaldo Mihasi 59e26dbb8d [WIP] EntityDoi table 2022-11-02 09:41:40 +02:00
Bernaldo Mihasi 7d624a2daa [WIP] system deposit authentication, using default repo token 2022-10-27 09:32:26 +03:00
Bernaldo Mihasi ab66a5f1da [WIP] implement zenodo repository deposit, add authentication for depositions 2022-10-26 13:50:01 +03:00
Bernaldo Mihasi 7dd2030eb3 [WIP] create deposit interface and implement multiple deposit repositories 2022-10-24 09:35:49 +03:00
Konstantina Galouni 49e42e9cba h2020_dataset.docx & WordBuilder.java & DataManagementPlanManager.java & DatasetManager.java: Updated footer of Dataset template to set title of DMP and Dataset. 2022-07-28 17:30:44 +03:00
George Kalampokis fa723c07ae Fix critical issue with open file handle leak on user guide folder 2022-07-28 11:23:39 +03:00
Konstantina Galouni a2228a5fb6 #7597, #7893, #7895, #7898: Updated DMP template file (h2020.docx) for export | Added Dataset template file (h2020_dataset.docx) for export | Updated indentation on exported docs. 
1. h2020.docx, h2020_dataset.docx: Updated DMP template & Added Dataset template.
2. application.properties, application-devel.properties, application-production.properties, application-staging.properties: Added property for dataset template file path configuration.h2020datasettemplate=documents/h2020_dataset.docx
3. ConfigLoader.java: Added method XWPFDocument getDatasetDocument();
4. DefaultConfigLoader.java: Added fiedls and methods for loading Dataset template (h2020_dataset.docx).
5. DataManagementPlanManager.java, DatasetManager.java, , HtmlToWorldBuilder.java, WordBuilder.java: Updated header/footer/first page in exports for DMPs and Datasets  | Updated indentation in exports.
 2022-07-26 17:00:54 +03:00
Konstantina Galouni 9b4c7aeb6f DataManagementPlanManager.java: #7893 - Added description of Datasets on DMP exported word file. 2022-07-12 12:52:04 +03:00
Bernaldo Mihasi 0ac5902bfd 1. export redesign based on new word template 
2. orcid researchers in export are clickable
 2022-06-13 15:16:48 +03:00
George Kalampokis 5cd79a6368 When Exporting DMP to word/pdf sort it's Datasets based on creation date 2022-06-07 10:56:44 +03:00
Konstantina Galouni 79bc95b099 [Bug fix] DatasetProfileManager.java: In method "createNewVersionDatasetProfile()", do not set label and language from oldDatasetProfile. 2022-05-31 16:51:59 +03:00
George Kalampokis e8a87765ee Fix authorization issue with Dataset Templates not showing to their original creators (that are not Admins) 2022-05-31 16:14:25 +03:00
George Kalampokis 912a3cc095 Order datasets on DMP listing (ref #7746) 2022-05-11 18:13:35 +03:00
Bernaldo Mihasi cfd0707f2a bug fix: license api-fields didnt get prefilled 2022-05-04 11:11:25 +03:00
George Kalampokis 7c933d9f32 Refactor Zenodo deposit creation. Add model for mapping instead of relying on stringBuilder 2022-04-07 17:31:45 +03:00
George Kalampokis e373baee7e Fix critical issue when importing from xml with researchers 2022-04-07 17:31:44 +03:00
George Kalampokis 2a12f1b5be Change Dataset sorting on DMP overview and editor from last modified to last created 2022-04-05 15:29:36 +03:00
George Kalampokis ef6e3b8d7c Sort Datasets by Modified date on DMP Overview and DMP Editor 2022-04-01 13:54:13 +03:00
George Kalampokis afb0be5b18 Make DMP export to be more consistent with the DMP shown on the front end UI 2022-03-29 15:13:58 +03:00
George Kalampokis c41c89774b Make Dataset Validation checker to no longer be exception depedant 2022-03-29 15:13:58 +03:00
George Kalampokis 3eb27c04f6 Fix critical issue with xml import 2022-03-29 11:32:52 +03:00
George Kalampokis 72507dd1b8 Fix issue with DMP json export if it have been imported from json 2022-03-29 10:57:06 +03:00
Bernaldo Mihasi 65b4e58aad attach images in word export 2022-03-17 10:47:50 +02:00
Konstantina Galouni 2a9d8b8296 #7528: [NEW] Upload files field type. 
1. Datasets.java: In "delete()" method, call also fileManager.markAllFilesOfEntityIdAsDeleted.
2. DatasetManager.java: Added method "deleteOldFilesAndAddNew()" which is called by "createOrUpdate()", to mark as deleted files that are not used any more and save the new ones.
3. DatabaseRepository.java & DatabaseRepositoryImpl.java: Include in DAOs FileUploadDAO.
4. ModelBuilder.java & ViewStyle.java: Incluse "upload" field type.
5. field-data.ts:
	a. In "getOrdinal()" method return Integer instead of int.
	b. In "getValidations()" method added null check.
	c. In methods "fromJsonObject()" and "toMap()" added special if clauses for "upload" field type.
6. application.properties:
   a. Added property "file.storage", to set the folder where the files will be permanently saved.
   b. Changed default spring.servlet.multipart.max-file-size and pring.servlet.multipart.max-request-size to 10 MB.
7. UserInvitationController.java: Deleted a print in System.out.
8. New files for upload field type: FileUploadDao.java, FileUploadDaoImpl.java, FileUpload.java, PostgreSQLEnumType.java (necessary for the enum EntityType), FileController.java, FileManager.java, UploadData.java.
 2022-03-16 12:14:08 +02:00
George Kalampokis dc06ba9201 Allow to return DMP with no Datasets for the Dataset Editor 2022-03-15 17:58:01 +02:00
George Kalampokis 563711eae4 Fix issue saving tags from template when the field is a textField 2022-03-15 17:52:58 +02:00
George Kalampokis ea72f64ed4 Replace DB DOIFunder with a json config file 2022-03-01 14:37:49 +02:00
George Kalampokis c3aff92cd4 Don't include Funder if it's not in the Doi Funder Table 2022-02-28 16:28:31 +02:00
George Kalampokis 5a3f871c58 Remove various unnecessary info messages 2022-02-28 15:24:10 +02:00
George Kalampokis 94a225cf9f Add Description on Dataset Export 2022-02-22 16:39:35 +02:00
Bernaldo Mihasi 494ee47620 zenodo prefilling customizations 2022-02-22 15:53:25 +02:00
George Kalampokis d1eab0d019 Fix issue with not showing datasets on all version listing 2022-02-22 11:30:22 +02:00
George Kalampokis b6c28be3b3 Optimize Dashboard's recent activity logic, removed various unused fields from Listing Models and implement toDataModel conversion logic in some models 2022-02-21 17:16:32 +02:00
George Kalampokis 71b1010ea1 Merge remote-tracking branch 'origin/Development' into Development 2022-02-18 17:52:04 +02:00
George Kalampokis d16e130dc6 Optimize general metric counter 2022-02-18 17:51:57 +02:00
George Kalampokis 11ff99fd77 Improve and generalize prefilling logic 2022-02-18 17:51:32 +02:00
argirok 3aa1c1ae59 fix issue with pub api #7326#note-5 the value was a number instaed of search 2022-02-18 17:41:33 +02:00
argirok cc926970ca Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 
 Conflicts:
	dmp-frontend/src/app/ui/admin/dataset-profile/editor/components/field/dataset-profile-editor-field.component.ts
 2022-02-18 17:09:34 +02:00
Bernaldo Mihasi da5ba952e1 rda export import tag bug, format preffiling fixed 2022-02-17 10:11:34 +02:00
George Kalampokis fac6a93c0a Fix minor worldBuilder issue and a minor refactor 2022-02-10 13:21:21 +02:00
George Kalampokis 4740fbe8e0 Refactor visibilityRuleService 2022-02-09 15:23:16 +02:00
argirok 938f98100f Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 2022-02-04 10:05:32 +02:00
Bernaldo Mihasi 125a97baed keyword-tags exported-imported fixes, prefilling more mapping 2022-01-28 14:55:52 +02:00
George Kalampokis 70d37cead1 Fix wrong metrics count for Dataset Template 2022-01-27 11:05:40 +02:00
argirok a3c4b3c143 Merge branch 'Development' of code-repo.d4science.org:MaDgiK-CITE/argos into Development 
 Conflicts:
	dmp-backend/web/src/main/java/eu/eudat/logic/proxy/fetching/RemoteFetcherUtils.java
 2022-01-24 11:12:56 +02:00
argirok 858fa3ee71 #7326 - static APIs 
1. Rename of "Registries" to "Metadata"
2. add apis for taxonomy, licenses, publications
3. change data repositories: from querying all registered to all of type data repository
4. add separate APIs for journals and pub repositories
 2022-01-21 15:44:51 +02:00
George Kalampokis 5a70ce7602 Fix issue of not keeping dataset template users after version update 2022-01-13 13:26:30 +02:00
George Kalampokis db01f2d119 Add fixedMappings for prefilling 2022-01-12 11:43:32 +02:00
George Kalampokis 728ea9a24f Add prefilling backend endpoints 2021-12-10 15:37:39 +02:00
George Kalampokis 0a39e64f9a Merge remote-tracking branch 'origin/Development' into Development 2021-12-07 17:16:41 +02:00
George Kalampokis 33784f3ee2 Add missing null check up 2021-12-07 17:16:22 +02:00
Diamantis Tziotzios 2cb985c23c bug fix 2021-12-07 16:52:49 +02:00
Diamantis Tziotzios 197de17aa5 no message 2021-12-06 15:32:38 +02:00
George Kalampokis de4c430d91 Fix issue with related datasets on dashboard 2021-12-03 16:49:23 +02:00
George Kalampokis b2825c8369 Fix issue with parsing some custom auto complete sources 2021-12-02 18:03:31 +02:00
George Kalampokis 19aa2bd411 Fix critical issue with public datasets 2021-11-25 16:45:29 +02:00
George Kalampokis aed23a655b When exporting DMP to xml or json get only the active/finalized datasets and not the deleted ones 2021-11-24 18:14:24 +02:00
George Kalampokis fc71e95cf3 Make dataset queries to return distinct results (avoid duplicate Id issues) 2021-11-24 16:23:02 +02:00
George Kalampokis e546362f58 Fix issue with elasticsearch inconsistencies 2021-11-23 14:05:57 +02:00
Konstantina Galouni bb0c398120 #7183: In DMP invitation, return authors whose name/ email contains the query string given by user (case insensitive). 
1. InvitationsManager.java:  Added method "getUsersWithCriteria()" to filter results according to "userInfoRequestItem.getCriteria().getLike()".
2. UserInvitationController.java: In method "getUsers()" added parameter "@RequestBody UserInfoRequestItem userInfoRequestItem" and call new method "invitationsManager.getUsersWithCriteria()" (instead of getUsers()).
 2021-11-22 13:44:41 +02:00
George Kalampokis 38cd336bc9 Add transactional to makeFinalize on DMP and remove jackson parsing when depositing to zenodo 2021-11-18 18:27:20 +02:00
George Kalampokis 54b142000c Merge remote-tracking branch 'origin/Development' into Development 2021-11-09 14:23:30 +02:00
George Kalampokis 1a373bc6f8 Add email notification when a user is added to a Dataset Template (ref #7148) 2021-11-09 14:23:22 +02:00
Konstantina Galouni 71b8742b0f LicenseManager.java & LocalFetchManager.java & TagController.java: #7135: No case sensitivilty for licenses, managers and tags. 2021-11-09 14:17:46 +02:00
George Kalampokis a7badfd9d5 Add nexus prometheus metrics 2021-11-09 13:05:38 +02:00
George Kalampokis 58ecadd79b Fix issue with project creation 2021-11-09 10:19:20 +02:00
George Kalampokis 39795f177f Fix critical issue with file exports on chromium based web browsers 2021-11-02 14:50:20 +02:00
George Kalampokis fd26e2a742 Fix issue with DMP index not updating after a new user is invited 2021-10-27 18:16:44 +03:00
George Kalampokis e66362ec38 Add prometheus metric for the number of grants used based on DMP status (ref #6462) 2021-10-20 12:42:08 +03:00
George Kalampokis 942782fe3c Use metrics predifined names instead of plain Strings 2021-10-13 17:49:32 +03:00
George Kalampokis 65644c3a35 Add extra sanity checks 2021-10-13 17:47:50 +03:00
George Kalampokis a4fef8e462 Refactor PDF conversion 2021-10-12 18:17:16 +03:00
George Kalampokis 1a821179db Even more Fixes over dashboard's sorting 2021-10-12 18:06:14 +03:00
George Kalampokis 29919f981a Fix issue with recent activity sorting 2021-10-12 15:41:20 +03:00
George Kalampokis 7fe84d7de5 Eliminate Duplicate user when making a new version 2021-10-08 16:52:01 +03:00
George Kalampokis a3af8ce3a5 Merge branch 'spring-update' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/controllers/Admin.java
#	dmp-backend/web/src/main/java/eu/eudat/controllers/Login.java
#	dmp-backend/web/src/main/java/eu/eudat/controllers/UserGuideController.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetProfileManager.java
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/MetricsManager.java
 2021-10-08 16:04:52 +03:00
George Kalampokis 9919886c26 Fix issues with dataset sorting on Dashboard with Elasticsearch 2021-10-08 11:02:56 +03:00
George Kalampokis 77d50773b8 Merge branch 'improved_queries' into Development 
# Conflicts:
#	dmp-backend/web/src/main/java/eu/eudat/logic/managers/DataManagementPlanManager.java
 2021-10-07 11:05:19 +03:00
George Kalampokis 524cededb6 Fix issue when exporting to docx/pdf 2021-10-06 18:16:39 +03:00