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fix out of memory error in management endpoints.

This commit is contained in:
Bernaldo Mihasi 2023-04-26 17:27:21 +03:00
parent 8c30c558b2
commit a1fd03a444
3 changed files with 14 additions and 4 deletions
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2
dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/DatasetProfileDao.java
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@ -16,4 +16,6 @@ public interface DatasetProfileDao extends DatabaseAccessLayer<DatasetProfile, U
QueryableList<DatasetProfile> getAuthenticated(QueryableList<DatasetProfile> query, UUID principal, List<Integer> roles); QueryableList<DatasetProfile> getAuthenticated(QueryableList<DatasetProfile> query, UUID principal, List<Integer> roles);
List<DatasetProfile> getAllIds();
} }

6
dmp-backend/data/src/main/java/eu/eudat/data/dao/entities/DatasetProfileDaoImpl.java
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@ -15,6 +15,7 @@ import org.springframework.stereotype.Component;
import javax.persistence.criteria.Join; import javax.persistence.criteria.Join;
import javax.persistence.criteria.JoinType; import javax.persistence.criteria.JoinType;
import java.util.Arrays; import java.util.Arrays;
import java.util.Collections;
import java.util.List; import java.util.List;
import java.util.UUID; import java.util.UUID;
import java.util.concurrent.CompletableFuture; import java.util.concurrent.CompletableFuture;
@ -86,6 +87,11 @@ public class DatasetProfileDaoImpl extends DatabaseAccess<DatasetProfile> implem
return getDatabaseService().getQueryable(DatasetProfile.class); return getDatabaseService().getQueryable(DatasetProfile.class);
} }
@Override
public List<DatasetProfile> getAllIds(){
return getDatabaseService().getQueryable(DatasetProfile.class).withFields(Collections.singletonList("id")).toList();
}
@Override @Override
public void delete(DatasetProfile item) { public void delete(DatasetProfile item) {
this.getDatabaseService().delete(item); this.getDatabaseService().delete(item);

10
dmp-backend/web/src/main/java/eu/eudat/logic/managers/DatasetProfileManager.java
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@ -386,8 +386,9 @@ public class DatasetProfileManager {
} }
public void addSchematicsInDatasetProfiles() throws XPathExpressionException { public void addSchematicsInDatasetProfiles() throws XPathExpressionException {
List<DatasetProfile> datasetProfiles = this.databaseRepository.getDatasetProfileDao().getAll().toList(); List<DatasetProfile> ids = this.databaseRepository.getDatasetProfileDao().getAllIds();
for(DatasetProfile datasetProfile: datasetProfiles){ for(DatasetProfile dp: ids){
DatasetProfile datasetProfile = this.databaseRepository.getDatasetProfileDao().find(dp.getId());
Document document = XmlBuilder.fromXml(datasetProfile.getDefinition()); Document document = XmlBuilder.fromXml(datasetProfile.getDefinition());
XPathFactory xpathFactory = XPathFactory.newInstance(); XPathFactory xpathFactory = XPathFactory.newInstance();
XPath xpath = xpathFactory.newXPath(); XPath xpath = xpathFactory.newXPath();
@ -411,8 +412,9 @@ public class DatasetProfileManager {
} }
public void addRdaInSchematicsInDatasetProfiles() throws XPathExpressionException { public void addRdaInSchematicsInDatasetProfiles() throws XPathExpressionException {
List<DatasetProfile> datasetProfiles = this.databaseRepository.getDatasetProfileDao().getAll().toList(); List<DatasetProfile> ids = this.databaseRepository.getDatasetProfileDao().getAllIds();
for(DatasetProfile datasetProfile: datasetProfiles){ for(DatasetProfile dp: ids){
DatasetProfile datasetProfile = this.databaseRepository.getDatasetProfileDao().find(dp.getId());
Document document = XmlBuilder.fromXml(datasetProfile.getDefinition()); Document document = XmlBuilder.fromXml(datasetProfile.getDefinition());
XPathFactory xpathFactory = XPathFactory.newInstance(); XPathFactory xpathFactory = XPathFactory.newInstance();
XPath xpath = xpathFactory.newXPath(); XPath xpath = xpathFactory.newXPath();