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269 Commits

Author SHA1 Message Date
Claudio Atzori 09ccc7b472 Merge branch 'beta' into project_organization_contribution 2022-07-28 09:49:59 +02:00
Claudio Atzori 0c1cfee396 mapping oaf:fulltext elements in the result.fulltext field 2022-07-11 17:34:59 +02:00
Claudio Atzori 7da24c1dec added more logging 2022-06-28 13:47:49 +02:00
Claudio Atzori 5130eac247 mapping by participant project contribution 2022-06-24 17:16:42 +02:00
Claudio Atzori 4c8e820ff0 mapping relationship from trasformed records based on oaf:relation 2022-06-14 08:49:02 +02:00
Claudio Atzori 116902c028 mapping relationship from trasformed records based on oaf:relation 2022-06-13 14:31:48 +02:00
Claudio Atzori 77bc9863e9 [openorgs] mapping parent/child relations without massaging the semantic labels 2022-05-09 16:06:04 +02:00
Claudio Atzori 2ade69dea6 EOSC Services - minor 2022-05-02 17:03:31 +02:00
Claudio Atzori b6a7ff3a99 EOSC Services - removed fields from mapping, testing preparation 2022-05-02 15:52:33 +02:00
Claudio Atzori f5f532d134 EOSC Services - ongoing update 2022-04-29 12:25:24 +02:00
Claudio Atzori 5ffc24d1ba EOSC Services - ongoing update 2022-04-26 16:18:41 +02:00
Claudio Atzori 05fafa1408 [graph raw] avoid NPEs importing datasource consent fields 2022-04-06 15:23:50 +02:00
Claudio Atzori 0a0ae84c22 [graph raw] DOI based instance URLs on https 2022-03-29 10:52:58 +02:00
Claudio Atzori f25407bbe2 added mapping for datasource consent fields to integrate them in the graph 2022-03-11 09:32:42 +01:00
Alessia Bardi 600ede1798 serialisation of APCs int he XML records 2022-02-11 11:00:20 +01:00
Miriam Baglioni aae667e6b6 [APC at the result level] added the APC at the level of the result and modified test class 2022-02-04 12:34:25 +01:00
Claudio Atzori f0ea2410e5 improved mapping titles from datacite records to consider title types 2022-01-21 10:50:34 +01:00
Sandro La Bruzzo bf880e2508 [scala-refactor] Module dhp-graph-mapper: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 13:57:41 +01:00
Sandro La Bruzzo 034304b33a conflict resolved on merge 2021-10-26 09:40:47 +02:00
Claudio Atzori d147295c2f avoiding java.io.NotSerializableException: java.util.HashMap 2021-10-21 14:15:57 +02:00
Claudio Atzori 3702fe478d cleanup 2021-10-21 12:05:02 +02:00
Sandro La Bruzzo ac36aa7d1c fixed wrong Encoding during a map phase 2021-10-21 11:35:02 +02:00
Claudio Atzori 00b78b9c58 cleanup: mapping contents in the graph already defined in the OAF graph model doesn't require to be aware of the vocabularies 2021-10-20 14:04:45 +02:00
Claudio Atzori c01dd0c925 registered oaf model classes for the KryoSerializer 2021-10-20 13:55:07 +02:00
Claudio Atzori 515e068a78 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-19 16:46:06 +02:00
Claudio Atzori 512e7b0170 code formatting 2021-10-19 16:19:29 +02:00
Claudio Atzori 98f37c8d81 WIP: worflow nodes for including Scholexplorer records in the RAW graph 2021-10-19 16:14:40 +02:00
Claudio Atzori 7a73010acd WIP: worflow nodes for including Scholexplorer records in the RAW graph 2021-10-19 11:59:16 +02:00
miconis 5f780a6ba1 bug fix in migrate entities: parameter name was wrong 2021-10-18 23:30:40 +02:00
miconis 995c1eddaf minor change 2021-10-13 17:07:10 +02:00
miconis 326bf63775 integration of parent child orgs relations 2021-10-13 12:24:48 +02:00
Alessia Bardi ccf4103a25 keep the original url if the decoder fails for any reason 2021-08-25 10:07:58 +02:00
Alessia Bardi 931f430129 Merge branch 'beta' into datasource_model_eosc_beta 2021-08-23 11:57:21 +02:00
Alessia Bardi 4c1474e693 Dealing with #6859#note-2: we have to decode URLs to avoid & and other chars encoded becasue of the original XML representation of data 2021-08-20 17:03:30 +02:00
Claudio Atzori 8cdce59e0e [graph raw] let the mapping exceptions propagate 2021-08-12 11:32:26 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Claudio Atzori 19620eed46 applying PR#131, Patch the identifiers (source/target) in the relations, refinements 2021-07-30 11:09:32 +02:00
Claudio Atzori e87e1805c4 [raw_all] added extra workflow step for patching the identifiers in the relations, given an id mapping dataset 2021-07-29 12:13:06 +02:00
Michele Artini e6f1773d63 mapping of new eosc fields 2021-07-28 11:17:11 +02:00
Claudio Atzori 65934888a1 adding record identifier among the originalIds regardless of what IdentifierFactory produces 2021-07-19 17:52:52 +02:00
Claudio Atzori 0977baf41d contents mapped from the stores with 'claim' interpretation will not change their identifier along their way towards the graph 2021-07-19 17:43:52 +02:00
Claudio Atzori b7b8e0986e [raw_all] The claim merge procedure includes the claimed contexts in the merged result 2021-07-08 10:42:31 +02:00
Claudio Atzori fdcff42e46 [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-07-07 19:01:59 +02:00
Claudio Atzori 32bdfdccbc [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-07-07 11:08:27 +02:00
Claudio Atzori f580cb77e1 added mapping for claim relation 'resultResult_publicationDataset_isRelatedTo' (present on BETA) 2021-07-06 21:11:11 +02:00
Claudio Atzori 50fc5a64a0 [raw_all] Aggregator graph creation merges claims (updates) with the corresponding entity 2021-06-23 11:49:42 +02:00
Claudio Atzori 7243a40c88 code formatting 2021-06-16 15:03:03 +02:00
Michele Artini ada063ce70 fixed a problem with empty mdstore list (2) 2021-06-14 12:04:47 +02:00
Michele Artini 83132ee99a fixed a problem with empty mdstore list 2021-06-14 11:57:00 +02:00
Claudio Atzori 2039bb9f5f orcid / orcid_pending cleaning backported from master branch 2021-06-14 09:40:50 +02:00
Michele Artini ede2749822 orcid pid type 2021-06-01 12:42:43 +02:00
Michele Artini f0fbfdcfae Merge branch 'stable_ids' into import_new_mdstores 2021-06-01 12:03:00 +02:00
Michele Artini 03a510859a removed coalesce(1) 2021-05-31 14:10:51 +02:00
Michele Artini e9f2b6037c patch of mdstore records 2021-05-31 11:36:26 +02:00
Michele Artini ad56a44fda save as gzipped sequence file 2021-05-28 14:45:39 +02:00
Michele Artini 4fa5671d16 first implementation of Hdfs Mdstores Importer 2021-05-27 16:22:07 +02:00
Claudio Atzori 5e4b91d9ef more pervasive use of constants from ModelConstants, especially for ORCID 2021-05-26 18:20:23 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Claudio Atzori ae5c28e54f code formatting 2021-05-20 16:13:06 +02:00
Claudio Atzori 232dce83db fixes #6701: xpath for titles to support both datacite and Guidelines v4 mapping 2021-05-20 14:41:15 +02:00
Claudio Atzori d4c3476152 mapping datasource.journal only when an issn is available, null otherwhise 2021-05-11 11:08:54 +02:00
Claudio Atzori d1cbee8413 imported methods from CleaningFunctions, defined in GraphCleaningFunctions 2021-05-10 16:43:39 +02:00
Claudio Atzori dccaf173cf fixed mapping applied to ODF records. Added unit test to verify the mapping for OpenTrials 2021-05-05 16:36:15 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00
Claudio Atzori 5afa7d3e0c core utilities in dhp-common moved in external module dhp-schemas 2021-04-27 15:44:01 +02:00
Claudio Atzori c25238480c making ODF record parsing namespace unaware (#6629) 2021-04-23 17:34:57 +02:00
miconis 0393cdce42 addition of alternative names in export queries 2021-04-20 12:45:21 +02:00
miconis bf685d849f addition of pids in the query for the export of openorgs for the provision, addition of ec_fields in the openorgs model 2021-04-07 14:27:43 +02:00
miconis eaaefb8b4c implementation of the procedure to reuse content of different dbs when creating the raw graph 2021-04-06 14:35:51 +02:00
miconis c39c82dfe9 modification of the jobs for the integration of openorgs in the provision, dedup records are no more created by merging but simply taking results of openorgs portal 2021-04-06 14:31:00 +02:00
Claudio Atzori 7941d7be29 WIP: using common definitions from ModelConstants 2021-03-31 18:33:57 +02:00
Claudio Atzori 72ce741ea6 WIP: using common definitions from ModelConstants 2021-03-31 17:07:13 +02:00
miconis 2709d08fc2 Merge branch 'stable_ids' into openorgswf 2021-03-29 16:39:07 +02:00
miconis 2355cc4e9b minor changes and bug fix 2021-03-29 10:07:12 +02:00
miconis 28c1cdd132 merged stable_ids into openorgswf 2021-03-25 10:44:49 +01:00
miconis 348b0ef921 bug fix, implementation of the workflow for the creation of raw_organizations (openorgs dedup), addition of the pid lists to the openorgs postgres db 2021-03-24 15:51:27 +01:00
Sandro La Bruzzo c73072079d fix conflicts 2021-03-22 16:36:31 +01:00
Claudio Atzori 8257f9a2bc result.pid: adjusted the mapping applied to the contents from the aggregator 2021-03-17 12:45:38 +01:00
Claudio Atzori 640b885706 added instance.alternativeIdentifiers to the graph model, adjusted the mapping applied to the contents from the aggregator 2021-03-16 14:19:32 +01:00
Claudio Atzori 01630f638d IdentifierFactory implementation based on the list of datasources authoritative for a given pid type 2021-03-09 17:11:50 +01:00
Claudio Atzori 59532b0919 [#6281 Provenance of product PIDs] Added PIDs to the Instance type; extended mapping for OAF/ODF records 2021-03-09 11:14:45 +01:00
Claudio Atzori d525785497 [#6282 open access status in the Graph] Result.Instance.accessRight defined with dedicated data type that includes the open access color. 2021-03-09 11:12:55 +01:00
Claudio Atzori f468c7f0d7 merged from master 2021-03-09 09:12:41 +01:00
Claudio Atzori 8d2bb24512 merged from master 2021-03-08 15:44:34 +01:00
miconis 1a85020572 bug fix in graph-mapper, changes in the implementation of the openorgs wf to create relations and populate openorgs db 2021-02-26 10:19:28 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
miconis 4b2124a18e implementation of the openorgs wfs, implementation of the raw_all wf to migrate openorgs db entities 2021-02-10 11:51:50 +01:00
Sandro La Bruzzo 686e7b507c Merge branch 'hadoop_aggregator' of code-repo.d4science.org:D-Net/dnet-hadoop into aggregation_on_hadoop 2021-01-28 10:02:13 +01:00
Sandro La Bruzzo 98b9498b57 Removed old messaging system not quite used from collection and Transformation workflow 
code refactor
 2021-01-28 09:51:17 +01:00
Sandro La Bruzzo 150a617bd1 Merge pull request 'aggregation_on_hadoop' (#90) from sandro.labruzzo/dnet-hadoop:aggregation_on_hadoop into hadoop_aggregator 
Wonderfull code... You're the Best Sandro
 2021-01-26 16:00:47 +01:00
Alessia Bardi 505477f36f format code 2021-01-25 18:02:49 +01:00
Alessia Bardi ded6ed8d7d no ',' author, if there are no author in ODF records 2021-01-25 17:57:51 +01:00
Sandro La Bruzzo a54848a59c Moved Vocabulary stuff to common module 2021-01-25 15:43:04 +01:00
Claudio Atzori 28460c2cd1 using com.fasterxml.jackson.databind.ObjectMapper instead of org.codehaus.jackson.map.ObjectMapper 2020-12-23 16:59:52 +01:00
Michele Artini 991e675dc6 validation in claim rels 2020-12-14 15:41:25 +01:00
Michele Artini 1bc9adc10d default trust for validated rels 2020-12-09 16:18:37 +01:00
Michele Artini 5f21a356fd reindent 2020-12-09 11:24:30 +01:00
Michele Artini 370a5e650b validation attributes in resultProject relations 2020-12-09 11:18:26 +01:00
Claudio Atzori 2c407e775e GenerateEntitiesApplication can be configured to hash the id value or not 2020-11-30 12:00:38 +01:00