patch of mdstore records
parent
ad56a44fda
commit
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<workflow-app name="Test Import of Hdfs Stores" xmlns="uri:oozie:workflow:0.5">
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<parameters>
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<property>
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<name>graphOutputPath</name>
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<description>the target path to store raw graph</description>
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</property>
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<property>
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<name>contentPath</name>
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<description>path location to store (or reuse) content from the aggregator</description>
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</property>
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<property>
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<name>mdstoreManagerUrl</name>
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<description>the address of the Mdstore Manager</description>
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</property>
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<property>
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<name>isLookupUrl</name>
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<description>the address of the lookUp service</description>
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</property>
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<property>
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<name>sparkDriverMemory</name>
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<description>memory for driver process</description>
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</property>
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<property>
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<name>sparkExecutorMemory</name>
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<description>memory for individual executor</description>
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</property>
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<property>
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<name>sparkExecutorCores</name>
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<description>number of cores used by single executor</description>
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</property>
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<property>
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<name>oozieActionShareLibForSpark2</name>
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<description>oozie action sharelib for spark 2.*</description>
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</property>
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<property>
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<name>spark2ExtraListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorAppListener</value>
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<description>spark 2.* extra listeners classname</description>
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</property>
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<property>
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<name>spark2SqlQueryExecutionListeners</name>
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<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
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<description>spark 2.* sql query execution listeners classname</description>
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</property>
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<property>
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<name>spark2YarnHistoryServerAddress</name>
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<description>spark 2.* yarn history server address</description>
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</property>
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<property>
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<name>spark2EventLogDir</name>
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<description>spark 2.* event log dir location</description>
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</property>
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</parameters>
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<global>
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<configuration>
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<property>
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<name>mapreduce.job.queuename</name>
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<value>${queueName}</value>
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</property>
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<property>
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<name>oozie.launcher.mapred.job.queue.name</name>
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<value>${oozieLauncherQueueName}</value>
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</property>
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<property>
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<name>oozie.action.sharelib.for.spark</name>
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<value>${oozieActionShareLibForSpark2}</value>
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</property>
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</configuration>
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</global>
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<start to="ImportODF_hdfs"/>
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<kill name="Kill">
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<message>Action failed, error message[${wf:errorMessage(wf:lastErrorNode())}]</message>
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</kill>
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<action name="ImportODF_hdfs">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>ImportODF_hdfs</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.MigrateHdfsMdstoresApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--hdfsPath</arg><arg>${contentPath}/odf_records_hdfs</arg>
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<arg>--mdstoreManagerUrl</arg><arg>${mdstoreManagerUrl}</arg>
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<arg>--mdFormat</arg><arg>ODF</arg>
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<arg>--mdLayout</arg><arg>store</arg>
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<arg>--mdInterpretation</arg><arg>cleaned</arg>
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</spark>
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<ok to="GenerateEntities"/>
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<error to="Kill"/>
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</action>
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<action name="GenerateEntities">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>GenerateEntities</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.GenerateEntitiesApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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</spark-opts>
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<arg>--sourcePaths</arg><arg>${contentPath}/odf_records_hdfs</arg>
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<arg>--targetPath</arg><arg>${workingDir}/entities</arg>
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<arg>--isLookupUrl</arg><arg>${isLookupUrl}</arg>
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<arg>--shouldHashId</arg><arg>${shouldHashId}</arg>
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</spark>
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<ok to="GenerateGraph"/>
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<error to="Kill"/>
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</action>
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<action name="GenerateGraph">
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<spark xmlns="uri:oozie:spark-action:0.2">
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<master>yarn</master>
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<mode>cluster</mode>
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<name>GenerateGraph</name>
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<class>eu.dnetlib.dhp.oa.graph.raw.DispatchEntitiesApplication</class>
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<jar>dhp-graph-mapper-${projectVersion}.jar</jar>
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<spark-opts>
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--executor-memory ${sparkExecutorMemory}
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--executor-cores ${sparkExecutorCores}
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--driver-memory=${sparkDriverMemory}
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--conf spark.extraListeners=${spark2ExtraListeners}
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--conf spark.sql.queryExecutionListeners=${spark2SqlQueryExecutionListeners}
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--conf spark.yarn.historyServer.address=${spark2YarnHistoryServerAddress}
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--conf spark.eventLog.dir=${nameNode}${spark2EventLogDir}
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--conf spark.sql.shuffle.partitions=7680
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</spark-opts>
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<arg>--sourcePath</arg><arg>${workingDir}/entities</arg>
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<arg>--graphRawPath</arg><arg>${workingDir}/graph_raw</arg>
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</spark>
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<ok to="End"/>
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<error to="Kill"/>
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</action>
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<end name="End"/>
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</workflow-app>
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@ -0,0 +1,77 @@
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<record xmlns:oaf="http://namespace.openaire.eu/oaf"
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xmlns:oai="http://www.openarchives.org/OAI/2.0/"
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xmlns:datacite="http://datacite.org/schema/kernel-3"
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xmlns:dr="http://www.driver-repository.eu/namespace/dr"
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xmlns:dri="http://www.driver-repository.eu/namespace/dri">
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<header xmlns="http://www.openarchives.org/OAI/2.0/">
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<identifier>df76e73f-0483-49a4-a9bb-63f2f985574a</identifier>
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<datestamp>2020-09-30T08:17:54Z</datestamp>
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<setSpec>eudat-b2find</setSpec>
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<dr:dateOfTransformation>2021-05-20T13:43:52.888Z</dr:dateOfTransformation>
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<dri:objIdentifier>test________::92fe3efa47883b2f3401e6a4bd92e9d7</dri:objIdentifier>
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<dri:dateOfCollection>2020-05-21T05:26:15.93Z</dri:dateOfCollection>
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<dri:dateOfTransformation>2020-08-01T11:06:26.977Z</dri:dateOfTransformation>
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</header>
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<metadata>
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<resource xmlns="http://datacite.org/schema/kernel-4"
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xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance"
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xsi:schemaLocation="http://datacite.org/schema/kernel-4 http://schema.datacite.org/meta/kernel-4.3/metadata.xsd">
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<creators>
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<creator>
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<creatorName>Museum Sønderjylland</creatorName>
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</creator>
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</creators>
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<titles>
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<title>200202-124 Hjelmvrå</title>
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</titles>
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<descriptions>
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<description descriptionType="Abstract">This record describes
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ancient sites and monuments as well archaeological excavations
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undertaken by Danish museums. Excerpt of the Danish description of
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events: 1995-04-26: Ved en besigtigelse ud for stedet fandt Nørgård
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en større mængde skår i skovens udkant, liggende i nogle
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drængrøfter1995-04-26: Leif Nørgård, der er leder af Sønderjyllands
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Amatørarkæologer, havde ved en samtale med en tidligere ansat på
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motorvejsprojektet gennem Sønderjylland fået at vide, at man på
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dette sted havde fundet "urner".1995-04-26: Ved en besigtigelse ud
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for stedet fandt Nørgård en større mængde skår i skovens udkant,
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liggende i nogle drængrøfter1995-04-26: Leif Nørgård, der er leder
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af Sønderjyllands Amatørarkæologer, havde ved en samtale med en
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tidligere ansat på motorvejsprojektet gennem Sønderjylland fået at
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vide, at man på dette sted havde fundet "urner".</description>
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</descriptions>
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<geoLocations>
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<geoLocation>
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<geoLocationPlace>(9.376 LON, 55.220 LAT)</geoLocationPlace>
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</geoLocation>
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</geoLocations>
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<subjects>
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<subject>Enkeltfund</subject>
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<subject>Settlement</subject>
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<subject>Single find</subject>
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<subject>Archaeology</subject>
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</subjects>
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<alternateIdentifiers
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xmlns="http://datacite.org/schema/kernel-3">
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<alternateIdentifier
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xmlns="http://datacite.org/schema/kernel-4"
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alternateIdentifierType="URL">http://www.kulturarv.dk/fundogfortidsminder/Lokalitet/136540/</alternateIdentifier>
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</alternateIdentifiers>
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<publicationYear>2020</publicationYear>
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<publisher>Slots- og Kulturstyrelsen (www.slks.dk)</publisher>
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<language>Danish</language>
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<rightsList>
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<rights>Public</rights>
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</rightsList>
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<resourceType resourceTypeGeneral="Other">Dataset</resourceType>
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</resource>
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<dr:CobjCategory type="dataset">0021</dr:CobjCategory>
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<oaf:dateAccepted>2020-01-01</oaf:dateAccepted>
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<oaf:accessrights>UNKNOWN</oaf:accessrights>
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<oaf:language>Danish</oaf:language>
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<oaf:hostedBy name="B2FIND"
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id="re3data_____::r3d100012377" />
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<oaf:collectedFrom name="B2FIND"
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id="re3data_____::r3d100012377" />
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</metadata>
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</record>
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