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3411 Commits

Author SHA1 Message Date
Claudio Atzori 4f212652ca scalafmt: code formatting 2022-01-11 16:57:48 +01:00
Sandro La Bruzzo 0163dadb7f [doiboost] 
- update MAG schema, new filed added on version dec-2021
 2022-01-11 11:05:44 +01:00
Miriam Baglioni 904e1c2667 Merge pull request 'Affiliation Propagation through semantic relation' (#183) from enrichment into beta 
Reviewed-on: #183
 2022-01-07 19:18:16 +01:00
Miriam Baglioni 064f9bbd87 [AFFPropSR] added new paprameter for the number of iterations and new code for just one iteration 2022-01-07 18:58:51 +01:00
Miriam Baglioni b7e450070b [SDG-FOS] to import SDG file not considering the header 2022-01-07 12:13:26 +01:00
Miriam Baglioni 639190370a mergin with branch beta 2022-01-07 11:29:25 +01:00
Miriam Baglioni adccc2346a [SDG-FOS] to lower case for the doi 2022-01-07 11:28:50 +01:00
Claudio Atzori 8ae46ca789 OAF-store-graph mdstores: firther fix for PR#180 2022-01-05 15:52:15 +01:00
Claudio Atzori 908294d86e OAF-store-graph mdstores: firther fix for PR#180 2022-01-05 15:49:05 +01:00
Claudio Atzori 3bd3653be9 OAF-store-graph mdstores: save them in text format 2022-01-04 16:39:39 +01:00
Claudio Atzori 3dc48c7ab5 OAF-store-graph mdstores: save them in text format 2022-01-04 16:39:27 +01:00
Claudio Atzori f82db765db OAF-store-graph mdstores: save them in text format 2022-01-04 16:39:15 +01:00
Claudio Atzori 8d13effa31 test for the tolerant deserialisation utility method 2022-01-04 16:38:26 +01:00
Claudio Atzori 9458ee7938 serialise records in the OAF-store-graph mdstores in json format. Read them again in the graph construction phase using a tolerant parser to support backward compatible changes in the evolution of the schema 2022-01-04 16:38:09 +01:00
Claudio Atzori 58f8998e3d OAF-store-graph mdstores: save them in text format 2022-01-04 15:02:09 +01:00
Claudio Atzori 174c3037e1 OAF-store-graph mdstores: save them in text format 2022-01-04 14:40:16 +01:00
Claudio Atzori 045d767013 OAF-store-graph mdstores: save them in text format 2022-01-04 14:23:01 +01:00
Claudio Atzori bd59b58efb test for the tolerant deserialisation utility method 2022-01-04 11:26:56 +01:00
Claudio Atzori a6977197b3 serialise records in the OAF-store-graph mdstores in json format. Read them again in the graph construction phase using a tolerant parser to support backward compatible changes in the evolution of the schema 2022-01-03 17:25:26 +01:00
Miriam Baglioni 4c60ee1718 mergin with branch beta 2022-01-03 15:24:02 +01:00
Miriam Baglioni 92fd69e25d [SDG-FOS] alternative way to get input data to avoid OOM error while getting csv 2022-01-03 15:23:06 +01:00
Claudio Atzori fe7e5f4748 Merge pull request '[stats wf] result_result relations, usage stats, monitor views, indicator for sprint 5' (#179) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #179
 2022-01-03 14:52:11 +01:00
Claudio Atzori bcea4e3a9b added dnet workflow profile for the orchestration of the simplified and complete graph construction and processing pipeline, where the IIS works on the non-deduplicated graph 2022-01-03 14:33:00 +01:00
Miriam Baglioni a706ba0c08 Merge pull request 'SDG Integration' (#178) from SDG into beta 
Reviewed-on: #178
 2021-12-23 14:50:00 +01:00
Antonis Lempesis 81ee654271 added result_result relations 2021-12-23 15:46:17 +02:00
Antonis Lempesis 7551e52e95 fixed a typo 2021-12-23 15:33:53 +02:00
Miriam Baglioni 7a1b440413 [SDG] logic to create unresolved entities out of SDG input. This changes also some classes related to FOS to reuse the same code. The code under createunresolvedentities create results with the merged update of the the inputs provided (bip at the level of the isntance, fos and sdg for subjects) 2021-12-23 13:24:28 +01:00
Claudio Atzori cccb16900c https://support.openaire.eu/issues/7330 normalising DOI urls 2021-12-23 12:33:53 +01:00
Miriam Baglioni 2a67ee13ec [SDG] added model class 2021-12-23 10:37:52 +01:00
Miriam Baglioni 69e9ea9eeb [Graph Dump] Test for extraction of rels from entities extended 2021-12-23 10:15:30 +01:00
Miriam Baglioni 31b26d48ac [Graph Dump] fixed issue on extraction of relation between entities and contexts: the relationship name and type were swapped 2021-12-23 10:09:47 +01:00
Miriam Baglioni 10579c0dd0 [FOS]fixed doi value in test 2021-12-22 23:10:16 +01:00
Miriam Baglioni 6116fc5d40 [FOS]added logic to include only different subjects. Test refactoring and extention 2021-12-22 23:04:22 +01:00
Miriam Baglioni b81efb6a9d [FOS]changed the mapping between the csv and the model. Changed Test classes and resources 2021-12-22 21:40:35 +01:00
Miriam Baglioni de6c4c8968 [FOS]creation of the unresolved entities: remove the split for the doi: no more needed since each row is related to one doi 2021-12-22 16:44:44 +01:00
Miriam Baglioni 34ac56565d refactoring 2021-12-22 16:28:11 +01:00
Miriam Baglioni 20ef1d657f refactoring 2021-12-22 16:26:36 +01:00
Miriam Baglioni 813f856d3f [BipFinder] removing left over parameter in wf 2021-12-22 16:11:12 +01:00
Miriam Baglioni 2c126ed014 [BipFinder] create unresolved entities with measures at the level of the instance 2021-12-22 16:03:41 +01:00
Miriam Baglioni 0807fdb65a [BipFinder] remove not needed resources 2021-12-22 15:37:00 +01:00
Miriam Baglioni b5e11a3a0a [BipFinder] put in common package BipFinder model 2021-12-22 15:33:05 +01:00
Miriam Baglioni c5739c4266 [BipFinder] create action set for the measures at the level of the result 2021-12-22 15:08:33 +01:00
Miriam Baglioni da5f6260aa mergin with branch beta 2021-12-22 13:12:02 +01:00
Miriam Baglioni be0acccf42 Merge branch 'beta' into dump 2021-12-22 12:39:57 +01:00
Antonis Lempesis 16539d7360 added usage stats 2021-12-22 02:54:42 +02:00
Antonis Lempesis 3edd661608 fixed column names 2021-12-21 22:55:04 +02:00
Antonis Lempesis a4c0cbb98c fixed typos in indicators. Added extra views in monitor 2021-12-21 15:54:38 +02:00
Miriam Baglioni e24a7f3496 mergin with branch beta 2021-12-21 13:57:19 +01:00
Miriam Baglioni d1ae219cb4 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-21 13:55:53 +01:00
Miriam Baglioni 460e6b95d6 [Graph Dump] - 2021-12-21 13:48:03 +01:00
Sandro La Bruzzo 3920d68992 Fixed workflow generation of delta in datacite 2021-12-21 11:41:49 +01:00
Antonis Lempesis 58996972d9 added first indicator of sprint 5 2021-12-21 03:35:04 +02:00
dimitrispie c1cdec09a9 Sprint 5 and other changes 2021-12-20 19:23:57 +02:00
Miriam Baglioni 3cc1b7b153 mergin with branch beta 2021-12-15 17:25:02 +01:00
Miriam Baglioni 63b648b0dd Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-15 12:41:15 +01:00
Antonis Lempesis f0b523cfa7 removed the too restrctive clause. will discuss again 2021-12-15 12:32:15 +01:00
Sandro La Bruzzo b881ee5ef8 [scholexplorer] 
- implemented generation of scholix of delta update of datacite
 2021-12-15 11:25:32 +01:00
Sandro La Bruzzo 63952018c0 [scholexplorer] 
-moved SparkRetrieveDataciteDelta in scala folder
 2021-12-15 11:25:32 +01:00
Sandro La Bruzzo e5bff64f2e [scholexplorer] 
- Minor fix on SparkConvertRDDtoDataset
-first implementation of retrieve datacite dump
 2021-12-15 11:25:32 +01:00
Claudio Atzori 1790fa2d44 Merge branch 'beta' into affiliationPropagation 2021-12-14 15:26:56 +01:00
Miriam Baglioni 56409d1281 [Dump] resolved conflicts with beta and merging 2021-12-14 15:03:45 +01:00
Miriam Baglioni 22d4b5619b [BipFinder Result] last changes to test and resources files 2021-12-14 14:54:13 +01:00
Miriam Baglioni 6fb6236cd4 changed the way to produce the AS for bipFinder. 2021-12-14 14:51:14 +01:00
Miriam Baglioni 573bd17cbb Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-14 11:12:25 +01:00
Miriam Baglioni 4eb8276493 - 2021-12-14 11:12:17 +01:00
Miriam Baglioni 936578aaf1 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-13 15:01:47 +01:00
Miriam Baglioni 8d755cca80 - 2021-12-13 15:01:40 +01:00
Claudio Atzori 98eb292c59 avoid NPEs merging XMLInstance(s) 2021-12-13 13:27:20 +01:00
Claudio Atzori 5e17247bb6 avoid NPEs merging XMLInstance(s) 2021-12-13 11:48:40 +01:00
Claudio Atzori b70ecccea0 avoid NPEs merging XMLInstance(s) 2021-12-12 12:37:38 +01:00
Claudio Atzori c1b6ae47cd cleaning workflow assigns the proper default instance type when a value could not be cleaned using the vocabularies 2021-12-09 16:47:41 +01:00
Claudio Atzori eb43eda42a Merge branch 'beta' into graph_cleaning 2021-12-09 16:46:48 +01:00
Claudio Atzori 41c70c607d cleaning workflow assigns the proper default instance type when a value could not be cleaned using the vocabularies 2021-12-09 16:44:28 +01:00
Alessia Bardi cba63e9f82 Merge branch 'beta' into sygma_indexing 2021-12-09 15:52:16 +01:00
Alessia Bardi e53228401b style 2021-12-09 15:46:22 +01:00
Claudio Atzori cd9c51fd7a vocabulary based cleaning considers also the term label when looking up for a synonym 2021-12-09 14:49:24 +01:00
Claudio Atzori e6e177dda0 vocabulary based cleaning considers also the term label when looking up for a synonym 2021-12-09 13:57:53 +01:00
Alessia Bardi 6b5d7688a4 #7275 serialize license information in XML records 2021-12-09 13:46:48 +01:00
Miriam Baglioni b113586207 resolved conflicts 2021-12-07 10:16:14 +01:00
Sandro La Bruzzo 5d51b3dd4a Merge pull request 'scala_refactor' (#169) from scala_refactor into beta 
Reviewed-on: #169
 2021-12-06 15:33:44 +01:00
Miriam Baglioni d9836f0cf3 [OpenCitations] fixed test when executed one after the other 2021-12-06 15:27:09 +01:00
Miriam Baglioni d1df01ff1e [Graph Dump] fixed resource for test 2021-12-06 15:15:48 +01:00
Sandro La Bruzzo ed0c352799 [test-fixing] fixed wrong test 2021-12-06 15:07:41 +01:00
Miriam Baglioni 96a7d46278 [Graph Dump] fixed tests 2021-12-06 15:06:32 +01:00
Sandro La Bruzzo e9f285ec4d [scala-refactor] Module dhp-doiboost: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 14:24:03 +01:00
Sandro La Bruzzo bf880e2508 [scala-refactor] Module dhp-graph-mapper: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 13:57:41 +01:00
Sandro La Bruzzo 7af0bbd0b1 [scala-refactor] Module dhp-aggregation: 
Moved all scala source into src/main/scala and src/test/scala
 2021-12-06 11:26:36 +01:00
Claudio Atzori 08795cbd30 using helper method from ModelSupport to find the inverse relation descriptor 2021-12-06 10:39:56 +01:00
Miriam Baglioni f430688ff7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-12-03 12:36:08 +01:00
Miriam Baglioni 4bb1d43afc - 2021-12-03 12:35:51 +01:00
Sandro La Bruzzo f7011b90d8 format code 2021-12-03 11:15:09 +01:00
Claudio Atzori dd0b2e5244 Merge branch 'beta' into instance_group_by_url 2021-12-03 09:27:58 +01:00
Claudio Atzori 863a2f9db3 avoid to filter OAF records defined as invisible = true 2021-12-03 09:08:12 +01:00
Claudio Atzori 9cac283bec implemented Instance serialization features requested in https://support.openaire.eu/issues/7156 2021-12-02 17:20:33 +01:00
Miriam Baglioni d9f80488cc [GRAPH DUMP] Add one more test to check the filtering of the relations 2021-12-02 14:15:19 +01:00
Miriam Baglioni 58bc3f223a [GRAPH DUMP] Add filtering for relation we do not want to dump. It is based on the relclass 2021-12-02 14:09:46 +01:00
Miriam Baglioni 8905a39bf3 mergin with branch beta 2021-12-02 13:17:29 +01:00
Miriam Baglioni 87eedad898 - 2021-12-02 13:17:19 +01:00
Claudio Atzori 3b19821f3c added stats computation on the graph hive DB tables 2021-12-02 10:44:10 +01:00
Claudio Atzori cfa4560769 minor: fixed hive action name 2021-12-02 10:43:36 +01:00
Claudio Atzori d85af6fc25 [cleaning wf] fixed OAF record navigation, a mapping defined on a container object would have prevented the natvigation to continue on its properties 2021-12-01 15:49:15 +01:00
Claudio Atzori 4fe7888817 code formatting 2021-12-01 15:48:15 +01:00
Claudio Atzori 01e5e0142a added test to verify the relation inverse lookup operation 2021-12-01 09:46:26 +01:00
Claudio Atzori 0df9574a6f Merge pull request '[stats wf] Added sprint 3&4 of indicators' (#166) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #166
 2021-11-29 10:40:26 +01:00
Claudio Atzori 1de881b796 resolved conflicts for #165 2021-11-26 16:15:11 +01:00
Claudio Atzori 014e872ae1 [resolution wf] added optional parameter to skip the entity resolution 2021-11-26 15:38:56 +01:00
Claudio Atzori 5c6d328537 code formatting 2021-11-26 15:38:16 +01:00
dimitrispie 09fc2afdca Added indi_funder_country_collab 
Kept only indi_pub_has_cc_licence
 2021-11-26 16:13:10 +02:00
Antonis Lempesis 0b4163ee0b added sprint3,4, removed 2, chaos 2021-11-26 15:58:01 +02:00
dimitrispie 29f69f2f89 Sprint 4 2021-11-26 15:22:04 +02:00
Miriam Baglioni ac07ed8251 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-11-25 12:32:58 +01:00
Miriam Baglioni 5fd0e610bf [DOIBOOST Process] fix filtering to filter results with non null id 2021-11-25 12:10:45 +01:00
Sandro La Bruzzo feea154e89 remove working dir after test 2021-11-25 11:02:38 +01:00
Sandro La Bruzzo 028a8acad8 add test resources 2021-11-25 10:54:47 +01:00
Sandro La Bruzzo 2164a2a889 Datacite: Code Refactor generated a general SparkApplication Scala where all the spark scala have to inherit 
Commented a little the Datacite transformation code
 2021-11-25 10:54:13 +01:00
Miriam Baglioni 3f9b2ba8ce [Hosted By Map] fix issue in test 2021-11-22 16:59:43 +01:00
Sandro La Bruzzo a7cf277d98 Datacite: Removed HostedBy Patch as described on ticket #7219, Now all the records will have hosted by Unknown Repository 2021-11-22 16:03:17 +01:00
Sandro La Bruzzo 483d3039d1 entity resolution: added distcpt of missing entities in graph materialization 2021-11-22 15:55:24 +01:00
Sandro La Bruzzo 93fe8ce8b2 entity resolution: fix test 2021-11-22 15:50:43 +01:00
Sandro La Bruzzo 35e20b0647 updated resolution wf: 
- generate a new version of the graph
 - changed merge from union to join
 2021-11-22 11:48:55 +01:00
Miriam Baglioni fdb75b180e [Cleaning] added couple of tests for DOIBOOST publications 2021-11-21 16:35:22 +01:00
Miriam Baglioni 0506fa2654 [Graph Dump] changed to mirror the changes in the model 2021-11-19 15:56:25 +01:00
Sandro La Bruzzo 3426451d3f Merge remote-tracking branch 'origin/beta' into beta 2021-11-19 14:49:04 +01:00
Sandro La Bruzzo 4542a2338b updated site configuration to deploy on website 2021-11-19 13:44:08 +01:00
Claudio Atzori e5a2c596b2 Merge branch 'beta' into preserve_openorg_parent_child_relations 2021-11-19 11:35:46 +01:00
Claudio Atzori f4538f3c4c cleanup 2021-11-19 11:33:10 +01:00
Claudio Atzori 2b46b87f56 fixed filtering criteria applied in SparkCopyRelationsNoOpenorgs to keep the parent/child relations from OpenOrgs 2021-11-19 11:30:29 +01:00
Miriam Baglioni 9fae872181 [Graph Dump] changed to mirror the changes in the model 2021-11-19 11:25:50 +01:00
Sandro La Bruzzo fc03c99805 fixed javadocs url after deploying site 2021-11-19 10:46:33 +01:00
Sandro La Bruzzo 0c0d561bc4 added public class into tests to create correct javadoc 2021-11-19 09:54:22 +01:00
Claudio Atzori 62fa61f3cf merge from beta 2021-11-19 09:23:42 +01:00
Claudio Atzori bd9a43cefd Revert to 4094f2bb9a 2021-11-19 09:20:43 +01:00
Claudio Atzori 3a4d925386 Merge branch 'beta' into hierarchical_orgs_relations 2021-11-18 18:07:08 +01:00
Claudio Atzori 3974fa7dc1 Merge branch 'beta' into affiliationPropagation 2021-11-18 18:06:26 +01:00
Claudio Atzori a24b9f8268 [dedup] trivial refactoring 2021-11-18 17:12:02 +01:00
Claudio Atzori c0750fb17c avoid non necessary count operations over large spark datasets 2021-11-18 17:11:31 +01:00
Claudio Atzori bb5dca7979 cleanup 2021-11-18 17:10:46 +01:00
Miriam Baglioni 793b5a8e5f Aggiornare 'dhp-workflows/dhp-graph-mapper/src/main/java/eu/dnetlib/dhp/oa/graph/dump/ResultMapper.java' 
Removing the dump of Measure at the level of the result. We decided not to map it
 2021-11-18 14:49:38 +01:00
Miriam Baglioni 5dc5792722 [Graph Dump] Change test resource to mirror the movement of the measure element 2021-11-18 14:39:12 +01:00
Miriam Baglioni 0136a8c266 [Graph Dump] Change test to mirror that measure is at the level of the isntance 2021-11-18 14:38:33 +01:00
Miriam Baglioni 1b79c0ee79 mergin with branch beta 2021-11-18 11:01:00 +01:00
Antonis Lempesis cb3adb90f4 Merge branch 'beta' into beta 2021-11-17 14:33:45 +01:00
Antonis Lempesis c283406829 added Universidad Polytecnica de Madrid 2021-11-17 15:33:00 +02:00
Claudio Atzori e0395719d7 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-11-17 14:17:27 +01:00
Claudio Atzori 82a4e4efae [cleaning wf] fixed methodology to rule out invalid result titles, based on https://support.openaire.eu/issues/7206 2021-11-17 14:17:22 +01:00
Miriam Baglioni 6d4a1c57ee [Resolve Entities] Change test dataset to mirror the modification in the creation of the map between the pids and the unresolved 2021-11-17 12:41:52 +01:00
Sandro La Bruzzo 9c82d670b8 make class public in order to create javadoc 2021-11-17 12:31:02 +01:00
Sandro La Bruzzo 1f5ee116ed code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala 
fixed test
 2021-11-17 12:23:52 +01:00
Sandro La Bruzzo 2fd9ceac13 code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala 2021-11-17 11:35:22 +01:00
Sandro La Bruzzo 2506d7a679 Merge branch 'mvn_site_documentation' of code-repo.d4science.org:D-Net/dnet-hadoop into mvn_site_documentation 2021-11-17 11:07:24 +01:00
Sandro La Bruzzo cded363b55 code refactor, created and moved scala code on the correct maven folder under src/main/scala and src/test/scala 2021-11-17 11:06:35 +01:00
Miriam Baglioni 4094f2bb9a added integration md file 2021-11-17 10:04:52 +01:00
Miriam Baglioni ec8b0219ff [Documentation] Added first page for Integration via unresolved entities generation 2021-11-16 17:41:34 +01:00
Miriam Baglioni 2bbece2ca5 mergin with branch beta 2021-11-16 16:35:40 +01:00
Sandro La Bruzzo 2d67020c59 added dhp-enrichment maven site template 2021-11-16 16:01:08 +01:00
Miriam Baglioni 28ea532ece [Affilaition Propagation] moved the selection of graph relation as a preparation step 2021-11-16 15:24:19 +01:00
Sandro La Bruzzo 18c1d70ef4 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into mvn_site_documentation 2021-11-16 15:16:49 +01:00
Sandro La Bruzzo a1cafaf2e3 added mvn site for dnet-hadoop project 2021-11-16 15:16:28 +01:00
Miriam Baglioni 7c96e3fd46 removed not useful dir 2021-11-16 13:57:26 +01:00
Miriam Baglioni c7c0c3187b [AFFILIATION PROPAGATION] Applied some SonarLint suggestions 2021-11-16 13:56:32 +01:00
Miriam Baglioni c6a9f0a1a8 mergin with branch beta 2021-11-16 12:04:40 +01:00
Miriam Baglioni 99d86134f5 [Graph Dump] changed the dump since the measures have been moded at the level of the instance 2021-11-16 12:04:21 +01:00
Claudio Atzori 0a727d325d [dedup] increased number of partitions in the consistency phase 2021-11-16 08:43:41 +01:00
Claudio Atzori bafa2990f3 code formatting 2021-11-15 17:07:16 +01:00
Claudio Atzori 668ac25224 [graph resolution] using existing argument parser file name 2021-11-15 17:02:45 +01:00
Claudio Atzori 7d0a03f607 [graph resolution] minor 2021-11-15 14:45:54 +01:00
Claudio Atzori 941a50a2fc Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-11-15 14:42:49 +01:00
Claudio Atzori 7c804acda8 [graph resolution] minor 2021-11-15 14:42:43 +01:00
Sandro La Bruzzo efa09057db Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2021-11-15 14:32:09 +01:00
Sandro La Bruzzo 48923e46a1 added documentation to Pubmed Class and also added mvn site for dhp-aggregations 2021-11-15 14:32:01 +01:00
Claudio Atzori d2c787d416 [graph resolution] fixed sequence of the workflow steps 2021-11-15 14:31:15 +01:00
Claudio Atzori 975b10b711 [actionmanager] increased spark.sql.shuffle.partitions to 5000 2021-11-15 12:31:45 +01:00
Miriam Baglioni 4ec88c718c merge with beta - resolved conflict in pom 2021-11-15 10:52:16 +01:00
Miriam Baglioni 6f1a434e90 [Bypass Action Set] Fixed test to consider the new identifier utils 2021-11-15 09:59:23 +01:00
Miriam Baglioni 157d33ebf9 [Bypass Action Set] Refactoring 2021-11-15 09:58:48 +01:00
Miriam Baglioni 6595135a1a [Dump Schemas] changed the schema of the dumped result according to the modifications in the bestAccessRight type 2021-11-12 11:45:38 +01:00
Miriam Baglioni 43cae4ad88 Merge branch 'dump' of https://code-repo.d4science.org/D-Net/dnet-hadoop into dump 2021-11-12 11:36:54 +01:00
Miriam Baglioni b3f9370125 merge with beta - resolved conflict in pom 2021-11-12 11:25:26 +01:00
Miriam Baglioni 92d0e18b55 [Bypass Action Set] used constant DOI instead of "doi" 2021-11-12 10:56:58 +01:00
Miriam Baglioni 881113743f [Bypass Action Set] refactoring 2021-11-12 10:55:50 +01:00
Miriam Baglioni 47ccb53c4f [Bypass Action Set] modification for comment #157 (comment) 2021-11-12 10:54:09 +01:00
Miriam Baglioni ffb0ce1d59 merge with beta - resolved conflict in pom 2021-11-12 10:19:59 +01:00
Miriam Baglioni 716021546e [Bypass Action Set] minor fix 2021-11-12 10:18:01 +01:00
Sandro La Bruzzo 3469cc2b1d Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2021-11-12 09:56:52 +01:00
Sandro La Bruzzo a7763d2492 removed alternate identifier in resolutionMap 2021-11-12 09:56:45 +01:00
Miriam Baglioni b8bdabfae9 [Graph DUmp] removed OpenAccessRoute from test in best access right 2021-11-11 16:16:48 +01:00
Miriam Baglioni e5498052e8 [Graph DUmp] removed OpenAccessRoute from test in best access right 2021-11-11 16:14:10 +01:00
Miriam Baglioni 935062edec [Bypass Action Set] creation of unresolved entities 2021-11-11 16:11:25 +01:00
Antonis Lempesis 26f086dd64 removed the too restrctive clause. will discuss again 2021-11-11 12:57:19 +02:00
Claudio Atzori 148289150f Merge branch 'beta' into doiboost_url 2021-11-11 10:40:19 +01:00
Sandro La Bruzzo 2ca0a436ad added SparkResolveEntities node to the oozie wf 2021-11-11 10:25:42 +01:00
Sandro La Bruzzo 9cb195314f implemented and tested resolution of entities 2021-11-11 10:17:40 +01:00
Miriam Baglioni 6d3c4c4abe mergin with branch beta 2021-11-11 08:59:53 +01:00
Miriam Baglioni 8cc50ecee0 [Graph Dump] changed AccessRight with BestAccessRight in the dump and modified the dependency to the schema to the SNAPSHOT 2021-11-11 08:59:20 +01:00
Miriam Baglioni 88b73f4f49 mergin with branch beta 2021-11-10 17:00:52 +01:00
Miriam Baglioni c371b23077 - 2021-11-10 17:00:37 +01:00
Alessia Bardi fc8fceaac3 create direct link to WT projects as well 2021-11-10 14:11:52 +01:00
Alessia Bardi 6cd91004e3 fixed DOI for Wellcome Trust in mapping relationships from Crossref 2021-11-09 12:22:57 +01:00
Miriam Baglioni 9e214ce0eb [BypassAS] addition of OC relations 2021-11-09 12:07:19 +01:00
Alessia Bardi b9d4f115cc fixed Crossref mappign for SFI projects 2021-11-09 12:04:45 +01:00
Sandro La Bruzzo 6477a40670 implement filter of openCitation 2021-11-09 11:27:12 +01:00
Miriam Baglioni 6f7ca539c6 [BypassAS] update of results for bipFinder and FOS 2021-11-09 11:25:41 +01:00
Miriam Baglioni a7d50c499b [BypassAS] prepare FOS subject, test and model for FOS and BipFinder scores 2021-11-08 16:44:19 +01:00
Antonis Lempesis 91354c6068 - fetching all context related results 
- storing tables as parquet
 2021-11-08 15:15:46 +02:00
Miriam Baglioni 94918a673c [Graph DUMP] Fix issue for empty origilaId list 2021-11-08 10:25:28 +01:00
Claudio Atzori 9cb8e4ad21 Merge branch 'beta' into hierarchical_orgs_relations 2021-11-08 09:40:24 +01:00
Miriam Baglioni 4c70201412 mergin with branch beta 2021-11-05 12:29:56 +01:00
Miriam Baglioni 8442efd8d1 [Graph DUMP] Filtering out from the originalIds the id of the result in OpenAIRE 2021-11-05 12:29:22 +01:00
Claudio Atzori 5681e89544 Update 'dhp-workflows/dhp-graph-mapper/src/main/resources/eu/dnetlib/dhp/oa/graph/dump/schemas/result_schema.json' 2021-11-05 12:18:24 +01:00
Miriam Baglioni a22c29fba1 [Graph DUMP] Filtering out from the originalIds the id of the result in OpenAIRE 2021-11-05 12:08:33 +01:00
Miriam Baglioni c10ff6928c [Graph DUMP] add schema of the dump related to the model as in dhp-schemas.2.8.31. Note the measere element at the level of the result has been removed because of issues on where to display it: at the level of the result or at the level of the entity 2021-11-05 11:36:21 +01:00
Miriam Baglioni 0857849a86 [Graph DUMP] Remove dump of measure until it will be clear where to put it (at the level of result or at the level of the instance) 2021-11-05 11:02:37 +01:00
Miriam Baglioni df7ee77c7a [DOIBoost Mapping] removed not needed comments 2021-11-04 16:24:07 +01:00
Miriam Baglioni de63d29b6f [DOIBoost Mapping] Fix to avoid to produce results with null as identifier (probably due to the filtering function in the factory for the creation of the id) 2021-11-04 16:16:40 +01:00
Miriam Baglioni d50057b2d9 [DOIBoost Mapping] changed the way to create the url for the instance: we use the crooref guidelines https://doi.org/doi 2021-11-03 16:59:37 +01:00
Miriam Baglioni edf55395e9 added test resourse 2021-11-03 16:49:30 +01:00
Miriam Baglioni d97ea82a29 [DOIBoost Mapping] Added test to verify the instance created for Crossref will have just the url related to the doi 2021-11-03 16:45:15 +01:00
Miriam Baglioni 96769b4481 [DOIBoost - Mapping] Changed the logic which brought in in the instance urls that should not be there: The urld of the doi in the json is reachable from the root (json/"URL") other urls where added from the links element. Now the mapping from the link element has been removed 2021-11-03 16:43:36 +01:00
Miriam Baglioni 683fe093cf [DOIBoost - Mapping] Remove the addition of the instance to the MAG publication record 2021-11-03 15:51:26 +01:00
Miriam Baglioni b2bb8d9d79 [DOIBoost - Mapping] selecting the url from Crossref containing the doi 2021-11-03 15:44:57 +01:00
Miriam Baglioni 779318961c [DOIBoost - Mapping] removed the url from crossref containing the api.elsevier.com... string in the url 2021-11-03 14:38:52 +01:00
Miriam Baglioni 2480e590d1 [DOIBoost - Mapping] changed the type on which to map dissertation from Crossref: from 006 Doctoral thesis to 0044 Thesis since dissertation could be either Doctoral or master thesis 2021-11-03 14:25:23 +01:00
Miriam Baglioni b9d124bb7c [Enrichment: Propagation through parent-child relationships] Added counters, and changed constraint to verify if filtering out the relation (from classname = harvested to classid != propagation) 2021-11-03 13:55:37 +01:00
Sandro La Bruzzo 7bd224f051 implement first version of scholexplorer integration for the generation of final graph 2021-11-02 15:58:15 +01:00
Antonis Lempesis b97b78f874 removed hardcoded reference 2021-11-02 09:12:49 +01:00
Claudio Atzori 7fa49f6956 Merge pull request 'removed hardcoded reference' (#154) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #154
 2021-11-02 09:11:30 +01:00
Antonis Lempesis f78afb5ef9 removed hardcoded reference 2021-11-01 15:42:29 +02:00
Miriam Baglioni 2aca6bfa0a mergin with branch beta 2021-10-29 11:20:45 +02:00
Miriam Baglioni 09f36cffb8 [Enrichment: Propagation through parent-child relationships] First implementation, testing, and wf for propagation of result to organization through semantic relation 2021-10-29 11:20:03 +02:00
Claudio Atzori 1225ba0b92 [resolution] increasing number of partitions to avoid OOM 2021-10-28 16:18:17 +02:00
Sandro La Bruzzo d9cbca83f7 moved filter on next phase 2021-10-28 16:13:24 +02:00
Claudio Atzori d02caef185 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-27 15:36:29 +02:00
Sandro La Bruzzo 1be9aa0a5f Removed filter of datacite items from the raw graph merging phase, Datacite is not an actionset anymore in beta 2021-10-26 17:52:20 +02:00
Sandro La Bruzzo 4acfa8fa2e Scholexplorer Datasource Aggregation: 
- Added collectedfrom in the inverse relation generated
Relation resolution:
- increased number of partitions in workflow.xml
- using classid instead of classname to build the pid-dnetId mapping
 2021-10-26 17:51:20 +02:00
Miriam Baglioni d0ef7d91c5 adding test resource 2021-10-26 17:34:11 +02:00
Sandro La Bruzzo 034304b33a conflict resolved on merge 2021-10-26 09:40:47 +02:00
Michele Artini d66e20e7ac added hierarchy rel in ROR actionset 2021-10-21 15:51:48 +02:00
Claudio Atzori d147295c2f avoiding java.io.NotSerializableException: java.util.HashMap 2021-10-21 14:15:57 +02:00
Claudio Atzori 3702fe478d cleanup 2021-10-21 12:05:02 +02:00
Sandro La Bruzzo ac36aa7d1c fixed wrong Encoding during a map phase 2021-10-21 11:35:02 +02:00
Sandro La Bruzzo aeeebd573b code refactor renamed datacite package 2021-10-20 17:37:42 +02:00
Sandro La Bruzzo ab3a99d3e9 removed old datacite oozie workflow 2021-10-20 17:19:47 +02:00
Sandro La Bruzzo ae4e99a471 Adapted workflow of resolution of PID to work into OpenAIRE data workflow 
- Added relations in both verse on all Scholexplorer datasources
 2021-10-20 17:12:16 +02:00
Claudio Atzori cece432adc [stats] reducing the step22 wait time 2021-10-20 14:16:33 +02:00
Antonis Lempesis a7376907c2 invalidating medatadata before context thingies 2021-10-20 14:16:25 +02:00
Antonis Lempesis 43f4eb492b fetching affiliated results for 4 orgs in monitor. fixed affiliated orgs in stats db 2021-10-20 14:16:11 +02:00
Claudio Atzori 4f8970f8ed [stats] reducing the step22 wait time 2021-10-20 14:14:53 +02:00
Claudio Atzori 00b78b9c58 cleanup: mapping contents in the graph already defined in the OAF graph model doesn't require to be aware of the vocabularies 2021-10-20 14:04:45 +02:00
Claudio Atzori c01dd0c925 registered oaf model classes for the KryoSerializer 2021-10-20 13:55:07 +02:00
Miriam Baglioni 652114c641 [affiliationPropagation] first try. preparetion 2021-10-20 11:44:23 +02:00
Claudio Atzori 59f76b50d4 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-20 09:42:35 +02:00
Antonis Lempesis 241dcf6df1 Merge branch 'beta' into beta 2021-10-19 23:54:21 +02:00
Claudio Atzori 515e068a78 Merge branch 'beta' into hierarchical_orgs_relations 2021-10-19 16:46:06 +02:00
Claudio Atzori 512e7b0170 code formatting 2021-10-19 16:19:29 +02:00
Michele Artini c4fce785ab fixed a compilation problem of a unit test 2021-10-19 16:18:26 +02:00
Claudio Atzori e9157c67aa Merge branch 'beta' into dump 2021-10-19 16:15:03 +02:00
Claudio Atzori 98f37c8d81 WIP: worflow nodes for including Scholexplorer records in the RAW graph 2021-10-19 16:14:40 +02:00
Claudio Atzori c8850456e9 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-10-19 16:09:54 +02:00
Claudio Atzori 172363e7f1 [broker] integrating PR#147, notification record creation phase separated from indexing on ES 2021-10-19 15:56:27 +02:00
Claudio Atzori bdffa86c2f undo last commit 2021-10-19 15:39:38 +02:00
Sandro La Bruzzo c9870c5122 code formatted 2021-10-19 15:24:59 +02:00
Sandro La Bruzzo f8329bc110 since dhp-schemas changed, introducing new Relation inverse model, this class has been updated 2021-10-19 15:24:22 +02:00
Claudio Atzori e471f12d5e hotfix: recovered implementation removing the hardcoded working_dirs 2021-10-19 12:35:38 +02:00
Claudio Atzori 7a73010acd WIP: worflow nodes for including Scholexplorer records in the RAW graph 2021-10-19 11:59:16 +02:00
Miriam Baglioni c7f6cd2591 added again the setting for saXReader 2021-10-19 10:15:26 +02:00
miconis 5f780a6ba1 bug fix in migrate entities: parameter name was wrong 2021-10-18 23:30:40 +02:00
Miriam Baglioni 1315952702 merge with branch beta 2021-10-18 14:17:09 +02:00
Miriam Baglioni 1cc09adfaa Opencitations: chenaged the test class to mirror the creation or not of duplicate dois for .refs oc original plus added optional parameter to duplicate the relation 2021-10-18 14:11:27 +02:00
Miriam Baglioni 76d41602be Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-10-18 10:53:22 +02:00
Miriam Baglioni 46f82c7c8f removed not needed folder deletion 2021-10-18 10:53:16 +02:00
Sandro La Bruzzo 7b15b88d4c renamed wrong package, implemented last aggregation workflow for scholexplorer 2021-10-15 15:00:15 +02:00
Antonis Lempesis 41ecb1eb61 invalidating medatadata before context thingies 2021-10-15 13:42:55 +03:00
Antonis Lempesis 4b7c8dff2d fetching affiliated results for 4 orgs in monitor. fixed affiliated orgs in stats db 2021-10-14 18:53:35 +03:00
Claudio Atzori e15a1969a5 applying fix on the DOIBoost construction process that somehow wasn't part of the merge done in 83c90c7180 2021-10-14 14:33:56 +02:00
Sandro La Bruzzo 51a03c0a50 refactor code for EBI from dhp-graph-mapper into dhp-aggregation 2021-10-14 14:23:13 +02:00
Claudio Atzori 14fbf92ad6 Merge branch 'beta' into beta_solr_config 2021-10-14 11:08:44 +02:00
Miriam Baglioni 4b1920f008 changed the working path parameter value as dependant from the dnet-workflow working dir parameter 2021-10-14 09:18:09 +02:00
Miriam Baglioni 8db39c86e2 added new parameter in the doiboost process workflow to specify a folder for the process of MAG dataset 2021-10-14 09:17:39 +02:00
Claudio Atzori b292e4a700 [stats wf] added extra logging in the context data retrieval phase 2021-10-13 17:31:53 +02:00
miconis 995c1eddaf minor change 2021-10-13 17:07:10 +02:00
Miriam Baglioni 5d9cc2452d changed the working path parameter value as dependant from the dnet-workflow working dir parameter 2021-10-13 15:33:50 +02:00
miconis 326bf63775 integration of parent child orgs relations 2021-10-13 12:24:48 +02:00
Miriam Baglioni 16b28494a9 added new parameter in the doiboost process workflow to specify a folder for the process of MAG dataset 2021-10-13 11:34:24 +02:00
Miriam Baglioni 63933808d4 added fix for mixing result types, added configuration default to funder subworkflow 2021-10-13 11:28:28 +02:00
Sandro La Bruzzo 7387416e90 added params skip update to direct transform in OAF, this should be set to true in production 2021-10-12 12:36:30 +02:00
Sandro La Bruzzo 511da98d0c - fixed bug on download pmc Article 
- removed unused line of code in SparkCreateActionset
 2021-10-12 11:47:49 +02:00
Miriam Baglioni fec40bdd95 merging with branch beta - resolved conflicts 2021-10-12 09:16:36 +02:00
Miriam Baglioni 83f51f1812 refactoring 2021-10-12 09:14:43 +02:00
Sandro La Bruzzo 5606014b17 code refactor see ticket #7065 2021-10-12 08:11:53 +02:00
Claudio Atzori 2f61054cd1 code formatting 2021-10-11 18:29:42 +02:00
Claudio Atzori 83c90c7180 manually merging PR#149 #149 2021-10-11 18:27:05 +02:00
Serafeim Chatzopoulos 201ce71cc1 Add resultsubject, relprojectname and resultacceptanceyear to __all field 2021-10-11 13:16:39 +03:00
Serafeim Chatzopoulos e468a7b96b Add tests to query Solr with different configurations 2021-10-08 16:58:51 +03:00
Serafeim Chatzopoulos de81007302 Add exploreTestConfig, a new Solr configuration folder 2021-10-08 16:54:56 +03:00
Sandro La Bruzzo 8f99d2af86 Make the node of doiBoost to point to the correct OpenAire Organization in relations 2021-10-08 08:35:12 +02:00
Alessia Bardi c48c43fa9e Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-10-07 17:30:53 +02:00
Alessia Bardi 8d3b60f446 test for patching records for EOSC Future 2021-10-07 17:30:45 +02:00
miconis 611ca511db set configuration property in openorgs duplicates wf 2021-10-07 15:39:55 +02:00
miconis 9646b9fd98 implementation of the http call for the update of openorgs suggestions 2021-10-07 11:29:11 +02:00
Sandro La Bruzzo 2557bb41f5 Implemented new method for update baseline inside scala node 2021-10-06 16:41:08 +02:00
Sandro La Bruzzo b84e0cabeb Implemented new method for update baseline 2021-10-05 16:34:47 +02:00
Michele Artini d6e1f22408 max numbers of workers for indexing 2021-10-05 15:09:18 +02:00
Michele Artini 210d6c0e6d generateNotificationsJob and indexNotificationsJob 2021-10-05 13:57:46 +02:00
Michele Artini 69008e20c2 log and tests 2021-10-05 11:58:20 +02:00
Sandro La Bruzzo f258bbb927 Merge branch 'beta' of code-repo.d4science.org:D-Net/dnet-hadoop into beta 2021-10-05 10:21:50 +02:00
Sandro La Bruzzo 991b06bd0b removed generation of EBI links from old dump, now EBI link dump is created by another wf 2021-10-05 10:21:33 +02:00
Claudio Atzori cb7efe12ac Merge pull request 'beta' (#146) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #146
 2021-10-05 10:09:37 +02:00
Michele Artini 8bbaa17335 reimplemented of conditions cache as a non static variable 2021-10-05 09:20:37 +02:00
Miriam Baglioni e653756e3d applied some suggestiond from Sonar Lint 2021-10-04 18:40:07 +02:00
Michele Artini 0a9ef34b56 test 2021-10-04 15:46:12 +02:00
Michele Artini 31a6ad1d79 optimization of verifySubsriptions() 2021-10-04 12:01:56 +02:00
dimitrispie 3f25d2efb2 Merge branch 'beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into beta 2021-10-01 16:03:48 +03:00
dimitrispie 13687fd887 Sprint 3 indicators update 2021-10-01 16:02:02 +03:00
Miriam Baglioni 9814c3e700 mergin with branch beta 2021-10-01 13:00:03 +02:00
Miriam Baglioni c4ccd7b32c - 2021-10-01 12:59:47 +02:00
Miriam Baglioni c8321ad31a merge with branch beta 2021-10-01 12:59:08 +02:00
Claudio Atzori b01cd521b0 removed configuration specifying the limit to 8 for spark.dynamicAllocation.maxExecutors 2021-10-01 11:26:33 +02:00
Claudio Atzori ec94cc9b93 IndexNotificationsJob test: persist contents on HDFS instead of passing them to ES 2021-10-01 09:41:27 +02:00
Claudio Atzori 60a6a9a583 [graph2hive] added field 'measures' to the result view 2021-09-30 09:27:26 +02:00
Sandro La Bruzzo 66702b1973 Added node to update datacite 2021-09-28 08:59:06 +02:00
Sandro La Bruzzo 477cb10715 Merge remote-tracking branch 'origin/beta' into beta 2021-09-27 16:57:23 +02:00
Sandro La Bruzzo be79d74e3d Fixed DoiBoost generation to point to correct organization in affiliation relation 2021-09-27 16:57:04 +02:00
Claudio Atzori 474117c2e8 Merge branch 'beta' into dedup_whitelist 2021-09-27 16:41:25 +02:00
Miriam Baglioni 476a4708d6 mergin with branch beta 2021-09-27 16:02:32 +02:00
Miriam Baglioni 5ec69889db OpenCitations: creation of AS from OC 2021-09-27 16:02:06 +02:00
Claudio Atzori a53acfbc06 Merge pull request '[stats] updates in the mapping, indicators, wf' (#145) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #145
 2021-09-27 15:59:54 +02:00
Alessia Bardi b924276e18 tests to generate records for the EOSC-Future demo with the EOSC Jupyter Notebbok subject 2021-09-24 17:11:56 +02:00
Antonis Lempesis a1e1cf32d7 fixed an impala error 2021-09-24 12:57:24 +03:00
Antonis Lempesis f358cabb2b fixed typo 2021-09-22 21:50:37 +03:00
Miriam Baglioni eedf7c3310 mergin with branch beta 2021-09-22 15:18:34 +02:00
Miriam Baglioni f2118d771a first steps in the implementation of the integration of opencitations 2021-09-22 15:18:05 +02:00
Claudio Atzori 7fa60e166e Merge branch 'beta' into dedup_whitelist 2021-09-22 11:31:18 +02:00
Antonis Lempesis 421d55265d created hive action for observatory queries 2021-09-21 03:07:58 +03:00
Enrico Ottonello 92a63f78fe multiple download attempts handling if a connection to orcid server fails 2021-09-20 18:25:00 +02:00
Enrico Ottonello 0c74f5667e Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-09-20 18:12:31 +02:00
miconis 853333bdde implementation of the whitelist for similarity relations 2021-09-20 16:21:47 +02:00
Antonis Lempesis 8b681dcf1b attempt to make the observatory wf run in hive 2021-09-18 00:35:14 +03:00
Antonis Lempesis 2943287d10 fixed the definition of cc_licence, part II 2021-09-16 15:59:06 +03:00
Antonis Lempesis dd2329849f fixed the definition of cc_licence 2021-09-16 13:50:34 +03:00
Claudio Atzori 09c2eb7f62 Merge branch 'beta' into clean_relations 2021-09-16 11:09:47 +02:00
Miriam Baglioni e9ccdf853f related to #132 2021-09-15 18:44:54 +02:00
Claudio Atzori 12766bf5f2 Merge branch 'beta' into clean_relations 2021-09-15 17:18:15 +02:00
Claudio Atzori 663b1556d7 manually integrating PR#140 #140 2021-09-15 16:40:25 +02:00
Claudio Atzori ebf53a1616 added cleaning for relation fields: subRelType & relClass according to dedicated vocabs 2021-09-15 16:10:37 +02:00
Enrico Ottonello 8b804e7fe1 removed unused imports 2021-09-14 17:30:52 +02:00
Enrico Ottonello aefa36c54b other task executions go ahead if UnknownHostException happens on a single task 2021-09-14 17:26:15 +02:00
Antonis Lempesis de9bf3a161 added cc_licences and abstracts in observatory db 2021-09-14 01:29:08 +03:00
Antonis Lempesis 9b1936701c fixed yet another typo 2021-09-13 21:07:44 +03:00
Antonis Lempesis 8fc89ae822 moved context table creation before indicators 2021-09-13 14:33:23 +03:00
Antonis Lempesis 461bf90ca6 fixed the gold_oa definition 2021-09-13 11:10:30 +03:00