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Commit Graph

47 Commits

Author SHA1 Message Date
Michele Artini 455f2e1e07 apply commits from master 2024-03-15 14:56:39 +01:00
Michele Artini 88fef367b9 new plugin to collect from a dump of BASE 2024-03-15 10:47:52 +01:00
Giambattista Bloisi 3cd5590f3b When converting json to XML, remove characters that are not allowed in the XML 1.0 specs, as they will cause xpath failures even if escaped 2024-02-28 15:14:18 +01:00
Giambattista Bloisi 773e856550 Revised procedure when converting json data into xml: 
- json object keys are renamed to be conformant to xml tag elements, special characters are substituted or removed
- json string values are no longer post-processed as they are already escaped by the org.json.XML.toString method
 2024-02-24 16:54:30 +01:00
Giambattista Bloisi e64c2854a3 Refactor Dedup process to use Spark Dataframe API and intermediate representation with Row interface 
JsonPath cache contention fixed by using a ConcurrentHashMap
Blacklist filtering performance improvement
Minor performance improvements when evaluating similarity
Sorting in clustered elements is deterministic (by ordering and identity field, instead of ordering field only)
 2023-07-24 15:36:24 +02:00
Claudio Atzori 92e48f12f7 [metadata collection] updated collector plugin name 2022-07-29 13:54:00 +02:00
Claudio Atzori 929b145130 code formatting 2022-06-21 23:07:06 +02:00
Serafeim Chatzopoulos 623f7be26d Fix reading files from HDFS in FileCollector & FileGZipCollector plugins 2022-04-28 16:31:11 +03:00
Serafeim Chatzopoulos d0b84d3297 Add FileCollectorPlugin and respective test 2022-04-07 15:06:38 +03:00
Serafeim Chatzopoulos bc1bf55507 Add AbstractSplittedRecordPlugin 2022-04-07 14:33:04 +03:00
Serafeim Chatzopoulos e612489670 Add fileGZip collector plugin and respective test 2022-04-06 19:12:44 +03:00
Claudio Atzori 663b1556d7 manually integrating PR#140 #140 2021-09-15 16:40:25 +02:00
Sandro La Bruzzo 3c6fc2096c fix bug on oai iterator that skip record cleaned 2021-09-07 10:46:26 +02:00
Miriam Baglioni 8769dd8eef GetCSV refactoring - refactoring due to movement of classes 2021-08-12 18:20:56 +02:00
Claudio Atzori 9f4db73f30 updated/fixed unit tests 2021-08-11 15:02:51 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Claudio Atzori 777536ce91 [aggregation] string values used as regular expressions in the OAI collection classes are defined in a single point as constants, to be reused across the code (PR#122) 2021-07-07 11:23:48 +02:00
Andreas Czerniak ebf3f47a02 from&until more OAI2.0 compl., adding tfs 2021-07-07 09:29:49 +02:00
Claudio Atzori 9d725efdc1 reverted implementation of the mdstore client 2021-05-20 18:26:09 +02:00
Claudio Atzori 23b8883ab1 applied intellij code cleanup 2021-05-14 10:58:12 +02:00
Claudio Atzori 923d19ea8e mdstore read lock/unlock when bulk copying records from mongodb to hdfs 2021-05-04 18:06:21 +02:00
Claudio Atzori 5afa7d3e0c core utilities in dhp-common moved in external module dhp-schemas 2021-04-27 15:44:01 +02:00
Sandro La Bruzzo 63c0303137 removed unused import, add log 2021-04-27 12:17:23 +02:00
Sandro La Bruzzo c73072079d fix conflicts 2021-03-22 16:36:31 +01:00
Claudio Atzori 61a2551e74 migrated last changes from svn (dnet45) 2021-03-15 17:17:55 +01:00
Claudio Atzori acbe3119a4 RestCollectorPlugin imported from dne45 2021-03-08 09:44:09 +01:00
Claudio Atzori b73dce3e3a more logging on the MDStore mongodb client. Forcing UTF_8 encoding on the content 2021-03-03 10:17:16 +01:00
Claudio Atzori 7df2461ccc indent XML records collected from oai-pmh endpoints 2021-02-25 16:19:12 +01:00
Claudio Atzori b830e33392 mdstore collector plugin 2021-02-25 12:30:30 +01:00
Claudio Atzori fc3fa5e343 implemented mdstore collector plugin 2021-02-24 15:07:24 +01:00
Claudio Atzori b592d78bb4 WIP: collectorWorker error reporting, generalised reported implementation 2021-02-17 10:28:01 +01:00
Claudio Atzori cf27905a71 WIP: collectorWorker error reporting, added report messages 2021-02-16 16:53:14 +01:00
Claudio Atzori 29c6f7e255 classes related to the collection workflow moved into common package; implemented MongoDB collection plugins 2021-02-12 12:31:02 +01:00
Claudio Atzori 50add4c61b added requestDelay to HttpConnector2 configuration; Aggregation workflow constants moved in dhp-common 2021-02-08 12:19:38 +01:00
Claudio Atzori 40df0f987d better logging, WIP: collectorWorker error reporting; common functions moved in DHPUtils 2021-02-06 20:12:00 +01:00
Claudio Atzori a8a758925e better logging, WIP: collectorWorker error reporting 2021-02-05 19:18:05 +01:00
Claudio Atzori deb85706db imported HttpConnector from https://svn.driver.research-infrastructures.eu/driver/dnet45/modules/dnet-modular-collector-service/trunk/src/main/java/eu/dnetlib/data/collector/plugins/HttpConnector.java as HttpConnector2 2021-02-04 17:24:52 +01:00
Claudio Atzori 40764cf626 better logging, WIP: collectorWorker error reporting 2021-02-04 14:06:02 +01:00
Claudio Atzori e04045089f better logging, WIP: collectorWorker error reporting 2021-02-03 17:58:22 +01:00
Claudio Atzori 0e8a4f9f1a better logging, WIP: collectorWorker error reporting 2021-02-03 12:33:41 +01:00
Sandro La Bruzzo 0276180039 WIP mdstore 
transaction implemented on hadoop side
 2021-01-29 16:42:41 +01:00
Sandro La Bruzzo 98b9498b57 Removed old messaging system not quite used from collection and Transformation workflow 
code refactor
 2021-01-28 09:51:17 +01:00
Claudio Atzori 6f5b899038 reformatted code according to the updated style descriptor 2020-04-28 11:23:29 +02:00
Claudio Atzori a0bdbacdae switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:52:31 +02:00
Claudio Atzori 7a3f8085f7 switched automatic code formatting plugin to net.revelc.code.formatter:formatter-maven-plugin 2020-04-27 14:45:40 +02:00
Claudio Atzori ad7a131b18 introduced common project code formatting plugin, works on the commit hook, based on https://github.com/Cosium/git-code-format-maven-plugin, applied to each java class in the project 2020-04-18 12:42:58 +02:00
Sandro La Bruzzo 5a8a323f2a dhp-collection-worker integrated in dhp-workflows 2019-10-24 11:36:59 +02:00