RestCollectorPlugin imported from dne45
This commit is contained in:
parent
fa7930d2e2
commit
acbe3119a4
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@ -86,6 +86,11 @@
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<artifactId>jaxen</artifactId>
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</dependency>
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<dependency>
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<groupId>org.json</groupId>
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<artifactId>json</artifactId>
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</dependency>
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<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-csv -->
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<dependency>
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<groupId>org.apache.commons</groupId>
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@ -24,6 +24,7 @@ import eu.dnetlib.dhp.collection.plugin.CollectorPlugin;
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import eu.dnetlib.dhp.collection.plugin.mongodb.MDStoreCollectorPlugin;
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import eu.dnetlib.dhp.collection.plugin.mongodb.MongoDbDumpCollectorPlugin;
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import eu.dnetlib.dhp.collection.plugin.oai.OaiCollectorPlugin;
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import eu.dnetlib.dhp.collection.plugin.rest.RestCollectorPlugin;
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public class CollectorWorker extends ReportingJob {
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@ -109,6 +110,8 @@ public class CollectorWorker extends ReportingJob {
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switch (CollectorPlugin.NAME.valueOf(api.getProtocol())) {
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case oai:
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return new OaiCollectorPlugin(clientParams);
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case rest_json2xml:
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return new RestCollectorPlugin(clientParams);
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case other:
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final CollectorPlugin.NAME.OTHER_NAME plugin = Optional
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.ofNullable(api.getParams().get("other_plugin_type"))
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@ -0,0 +1,84 @@
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package eu.dnetlib.dhp.collection;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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public class JsonUtils {
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private static final Log log = LogFactory.getLog(JsonUtils.class);
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public static final String wrapName = "recordWrap";
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/**
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* convert in JSON-KeyName 'whitespace(s)' to '_' and '/' to '_', '(' and ')' to ''
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* check W3C XML syntax: https://www.w3.org/TR/2006/REC-xml11-20060816/#sec-starttags for valid tag names
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* and work-around for the JSON to XML converting of org.json.XML-package.
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*
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* known bugs: doesn't prevent "key name":" ["sexy name",": penari","erotic dance"],
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*
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* @param jsonInput
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* @return convertedJsonKeynameOutput
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*/
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public String syntaxConvertJsonKeyNames(String jsonInput) {
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log.trace("before convertJsonKeyNames: " + jsonInput);
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// pre-clean json - rid spaces of element names (misinterpreted as elements with attributes in xml)
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// replace ' 's in JSON Namens with '_'
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while (jsonInput.matches(".*\"([^\"]*)\\s+([^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"]*)\\s+([^\"]*)\":", "\"$1_$2\":");
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}
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// replace forward-slash (sign '/' ) in JSON Names with '_'
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while (jsonInput.matches(".*\"([^\"]*)/([^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"]*)/([^\"]*)\":", "\"$1_$2\":");
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}
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// replace '(' in JSON Names with ''
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while (jsonInput.matches(".*\"([^\"]*)[(]([^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"]*)[(]([^\"]*)\":", "\"$1$2\":");
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}
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// replace ')' in JSON Names with ''
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while (jsonInput.matches(".*\"([^\"]*)[)]([^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"]*)[)]([^\"]*)\":", "\"$1$2\":");
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}
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// add prefix of startNumbers in JSON Keynames with 'n_'
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while (jsonInput.matches(".*\"([^\"][0-9])([^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"][0-9])([^\"]*)\":", "\"n_$1$2\":");
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}
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// add prefix of only numbers in JSON Keynames with 'm_'
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while (jsonInput.matches(".*\"([0-9]+)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([0-9]+)\":", "\"m_$1\":");
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}
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// replace ':' between number like '2018-08-28T11:05:00Z' in JSON keynames with ''
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while (jsonInput.matches(".*\"([^\"]*[0-9]):([0-9][^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"]*[0-9]):([0-9][^\"]*)\":", "\"$1$2\":");
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}
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// replace ',' in JSON Keynames with '.' to prevent , in xml tagnames.
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// while (jsonInput.matches(".*\"([^\"]*),([^\"]*)\":.*")) {
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// jsonInput = jsonInput.replaceAll("\"([^\"]*),([^\"]*)\":", "\"$1.$2\":");
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// }
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// replace '=' in JSON Keynames with '-'
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while (jsonInput.matches(".*\"([^\"]*)=([^\"]*)\":.*")) {
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jsonInput = jsonInput.replaceAll("\"([^\"]*)=([^\"]*)\":", "\"$1-$2\":");
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}
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log.trace("after syntaxConvertJsonKeyNames: " + jsonInput);
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return jsonInput;
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}
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public String convertToXML(final String jsonRecord) {
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String resultXml = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>";
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org.json.JSONObject jsonObject = new org.json.JSONObject(syntaxConvertJsonKeyNames(jsonRecord));
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resultXml += org.json.XML.toString(jsonObject, wrapName); // wrap xml in single root element
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log.trace("before inputStream: " + resultXml);
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resultXml = XmlCleaner.cleanAllEntities(resultXml);
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log.trace("after cleaning: " + resultXml);
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return resultXml;
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}
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}
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@ -10,7 +10,7 @@ import eu.dnetlib.dhp.collection.CollectorException;
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public interface CollectorPlugin {
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enum NAME {
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oai, other;
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oai, other, rest_json2xml;
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public enum OTHER_NAME {
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mdstore_mongodb_dump, mdstore_mongodb
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@ -0,0 +1,92 @@
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package eu.dnetlib.dhp.collection.plugin.rest;
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import java.util.Spliterator;
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import java.util.Spliterators;
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import java.util.stream.Stream;
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import java.util.stream.StreamSupport;
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import org.apache.commons.lang3.StringUtils;
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import eu.dnetlib.dhp.aggregation.common.AggregatorReport;
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import eu.dnetlib.dhp.collection.ApiDescriptor;
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import eu.dnetlib.dhp.collection.CollectorException;
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import eu.dnetlib.dhp.collection.HttpClientParams;
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import eu.dnetlib.dhp.collection.plugin.CollectorPlugin;
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/**
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* TODO: delegate HTTP requests to the common HttpConnector2 implementation.
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*
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* @author js, Andreas Czerniak
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* @date 2020-04-09
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*
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*/
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public class RestCollectorPlugin implements CollectorPlugin {
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private HttpClientParams clientParams;
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public RestCollectorPlugin(HttpClientParams clientParams) {
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this.clientParams = clientParams;
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}
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@Override
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public Stream<String> collect(final ApiDescriptor api, final AggregatorReport report) throws CollectorException {
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final String baseUrl = api.getBaseUrl();
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final String resumptionType = api.getParams().get("resumptionType");
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final String resumptionParam = api.getParams().get("resumptionParam");
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final String resumptionXpath = api.getParams().get("resumptionXpath");
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final String resultTotalXpath = api.getParams().get("resultTotalXpath");
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final String resultFormatParam = api.getParams().get("resultFormatParam");
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final String resultFormatValue = api.getParams().get("resultFormatValue");
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final String resultSizeParam = api.getParams().get("resultSizeParam");
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final String resultSizeValue = (StringUtils.isBlank(api.getParams().get("resultSizeValue"))) ? "100"
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: api.getParams().get("resultSizeValue");
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final String queryParams = api.getParams().get("queryParams");
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final String entityXpath = api.getParams().get("entityXpath");
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final String authMethod = api.getParams().get("authMethod");
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final String authToken = api.getParams().get("authToken");
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if (StringUtils.isBlank(baseUrl)) {
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throw new CollectorException("Param 'baseUrl' is null or empty");
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}
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if (StringUtils.isBlank(resumptionType)) {
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throw new CollectorException("Param 'resumptionType' is null or empty");
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}
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if (StringUtils.isBlank(resumptionParam)) {
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throw new CollectorException("Param 'resumptionParam' is null or empty");
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}
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if (StringUtils.isBlank(resultFormatValue)) {
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throw new CollectorException("Param 'resultFormatValue' is null or empty");
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}
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if (StringUtils.isBlank(queryParams)) {
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throw new CollectorException("Param 'queryParams' is null or empty");
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}
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if (StringUtils.isBlank(entityXpath)) {
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throw new CollectorException("Param 'entityXpath' is null or empty");
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}
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RestIterator it = new RestIterator(
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getClientParams(),
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baseUrl,
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resumptionType,
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resumptionParam,
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resumptionXpath,
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resultTotalXpath,
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resultFormatParam,
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resultFormatValue,
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resultSizeParam,
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resultSizeValue,
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queryParams,
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entityXpath,
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authMethod,
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authToken);
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return StreamSupport
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.stream(
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Spliterators.spliteratorUnknownSize(it, Spliterator.ORDERED), false);
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}
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public HttpClientParams getClientParams() {
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return clientParams;
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}
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}
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@ -0,0 +1,442 @@
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package eu.dnetlib.dhp.collection.plugin.rest;
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import java.io.InputStream;
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import java.io.StringWriter;
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import java.io.UnsupportedEncodingException;
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import java.net.HttpURLConnection;
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import java.net.URL;
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import java.net.URLEncoder;
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import java.nio.charset.StandardCharsets;
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import java.util.Iterator;
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import java.util.Queue;
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import java.util.concurrent.PriorityBlockingQueue;
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import javax.xml.transform.OutputKeys;
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import javax.xml.transform.Transformer;
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import javax.xml.transform.TransformerConfigurationException;
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import javax.xml.transform.TransformerFactory;
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import javax.xml.transform.dom.DOMSource;
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import javax.xml.transform.stream.StreamResult;
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import javax.xml.xpath.*;
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import org.apache.commons.httpclient.HttpMethod;
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import org.apache.commons.io.IOUtils;
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import org.apache.commons.lang3.StringUtils;
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import org.apache.commons.logging.Log;
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import org.apache.commons.logging.LogFactory;
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import org.apache.http.HttpHeaders;
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import org.w3c.dom.Node;
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import org.w3c.dom.NodeList;
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import org.xml.sax.InputSource;
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import eu.dnetlib.dhp.collection.CollectorException;
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import eu.dnetlib.dhp.collection.HttpClientParams;
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import eu.dnetlib.dhp.collection.JsonUtils;
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/**
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* log.debug(...) equal to log.trace(...) in the application-logs
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* <p>
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* known bug: at resumptionType 'discover' if the (resultTotal % resultSizeValue) == 0 the collecting fails -> change the resultSizeValue
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*
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* @author Jochen Schirrwagen, Aenne Loehden, Andreas Czerniak
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* @date 2020-04-09
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*
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*/
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public class RestIterator implements Iterator<String> {
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private static final Log log = LogFactory.getLog(RestIterator.class);
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private HttpClientParams clientParams;
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private final String BASIC = "basic";
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private JsonUtils jsonUtils;
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private String baseUrl;
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private String resumptionType;
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private String resumptionParam;
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private String resultFormatValue;
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private String queryParams;
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private int resultSizeValue;
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private int resumptionInt = 0; // integer resumption token (first record to harvest)
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private int resultTotal = -1;
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private String resumptionStr = Integer.toString(resumptionInt); // string resumption token (first record to harvest
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// or token scanned from results)
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private InputStream resultStream;
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private Transformer transformer;
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private XPath xpath;
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private String query;
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private XPathExpression xprResultTotalPath;
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private XPathExpression xprResumptionPath;
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private XPathExpression xprEntity;
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private String queryFormat;
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private String querySize;
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private String authMethod;
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private String authToken;
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private final Queue<String> recordQueue = new PriorityBlockingQueue<String>();
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private int discoverResultSize = 0;
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private int pagination = 1;
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/**
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* RestIterator class
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*
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* compatible to version before 1.3.33
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*
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* @param baseUrl
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* @param resumptionType
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* @param resumptionParam
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* @param resumptionXpath
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* @param resultTotalXpath
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* @param resultFormatParam
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* @param resultFormatValue
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* @param resultSizeParam
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* @param resultSizeValueStr
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* @param queryParams
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* @param entityXpath
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*/
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public RestIterator(
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final HttpClientParams clientParams,
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final String baseUrl,
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final String resumptionType,
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final String resumptionParam,
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final String resumptionXpath,
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final String resultTotalXpath,
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final String resultFormatParam,
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final String resultFormatValue,
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final String resultSizeParam,
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final String resultSizeValueStr,
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final String queryParams,
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final String entityXpath) {
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this(clientParams, baseUrl, resumptionType, resumptionParam, resumptionXpath, resultTotalXpath,
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resultFormatParam, resultFormatValue, resultSizeParam, resultSizeValueStr, queryParams, entityXpath, "",
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"");
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}
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public RestIterator(
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final HttpClientParams clientParams,
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final String baseUrl,
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final String resumptionType,
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final String resumptionParam,
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final String resumptionXpath,
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final String resultTotalXpath,
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final String resultFormatParam,
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final String resultFormatValue,
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final String resultSizeParam,
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final String resultSizeValueStr,
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final String queryParams,
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final String entityXpath,
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final String authMethod,
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final String authToken,
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final String resultOffsetParam) {
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this(clientParams, baseUrl, resumptionType, resumptionParam, resumptionXpath, resultTotalXpath,
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resultFormatParam, resultFormatValue, resultSizeParam, resultSizeValueStr, queryParams, entityXpath, "",
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"");
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}
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/** RestIterator class
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* compatible to version 1.3.33
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*/
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public RestIterator(
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final HttpClientParams clientParams,
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final String baseUrl,
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final String resumptionType,
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final String resumptionParam,
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final String resumptionXpath,
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final String resultTotalXpath,
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final String resultFormatParam,
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final String resultFormatValue,
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final String resultSizeParam,
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final String resultSizeValueStr,
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final String queryParams,
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final String entityXpath,
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final String authMethod,
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final String authToken) {
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this.clientParams = clientParams;
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this.jsonUtils = new JsonUtils();
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this.baseUrl = baseUrl;
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this.resumptionType = resumptionType;
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this.resumptionParam = resumptionParam;
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this.resultFormatValue = resultFormatValue;
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this.queryParams = queryParams;
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this.resultSizeValue = Integer.valueOf(resultSizeValueStr);
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this.authMethod = authMethod;
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this.authToken = authToken;
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queryFormat = StringUtils.isNotBlank(resultFormatParam) ? "&" + resultFormatParam + "=" + resultFormatValue
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: "";
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querySize = StringUtils.isNotBlank(resultSizeParam) ? "&" + resultSizeParam + "=" + resultSizeValueStr : "";
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try {
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initXmlTransformation(resultTotalXpath, resumptionXpath, entityXpath);
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} catch (Exception e) {
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throw new IllegalStateException("xml transformation init failed: " + e.getMessage());
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}
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initQueue();
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}
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private void initXmlTransformation(String resultTotalXpath, String resumptionXpath, String entityXpath)
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throws TransformerConfigurationException, XPathExpressionException {
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transformer = TransformerFactory.newInstance().newTransformer();
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transformer.setOutputProperty(OutputKeys.INDENT, "yes");
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transformer.setOutputProperty("{http://xml.apache.org/xslt}indent-amount", "3");
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xpath = XPathFactory.newInstance().newXPath();
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xprResultTotalPath = xpath.compile(resultTotalXpath);
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xprResumptionPath = xpath.compile(StringUtils.isBlank(resumptionXpath) ? "/" : resumptionXpath);
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xprEntity = xpath.compile(entityXpath);
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}
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private void initQueue() {
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query = baseUrl + "?" + queryParams + querySize + queryFormat;
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}
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private void disconnect() {
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// TODO close inputstream
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}
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/*
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* (non-Javadoc)
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* @see java.util.Iterator#hasNext()
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*/
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@Override
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public boolean hasNext() {
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if (recordQueue.isEmpty() && query.isEmpty()) {
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disconnect();
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return false;
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} else {
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return true;
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}
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}
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/*
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* (non-Javadoc)
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* @see java.util.Iterator#next()
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*/
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@Override
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public String next() {
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synchronized (recordQueue) {
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while (recordQueue.isEmpty() && !query.isEmpty()) {
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try {
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log.debug("get Query: " + query);
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query = downloadPage(query);
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log.debug("next queryURL from downloadPage(): " + query);
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} catch (CollectorException e) {
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log.debug("CollectorPlugin.next()-Exception: " + e);
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throw new RuntimeException(e);
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}
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}
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return recordQueue.poll();
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}
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}
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/*
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* download page and return nextQuery
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*/
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private String downloadPage(String query) throws CollectorException {
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String resultJson;
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String resultXml = "<?xml version=\"1.0\" encoding=\"UTF-8\"?>";
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String emptyXml = resultXml + "<" + JsonUtils.wrapName + "></" + JsonUtils.wrapName + ">";
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Node resultNode = null;
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NodeList nodeList = null;
|
||||
InputStream theHttpInputStream;
|
||||
|
||||
// check if cursor=* is initial set otherwise add it to the queryParam URL
|
||||
if (resumptionType.equalsIgnoreCase("deep-cursor")) {
|
||||
log.debug("check resumptionType deep-cursor and check cursor=*?" + query);
|
||||
if (!query.contains("&cursor=")) {
|
||||
query += "&cursor=*";
|
||||
}
|
||||
}
|
||||
|
||||
try {
|
||||
URL qUrl = new URL(query);
|
||||
log.debug("authMethod :" + authMethod);
|
||||
if (this.authMethod == "bearer") {
|
||||
log.trace("authMethod before inputStream: " + resultXml);
|
||||
HttpURLConnection conn = (HttpURLConnection) qUrl.openConnection();
|
||||
conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Bearer " + authToken);
|
||||
conn.setRequestProperty(HttpHeaders.CONTENT_TYPE, "application/json");
|
||||
conn.setRequestMethod("GET");
|
||||
theHttpInputStream = conn.getInputStream();
|
||||
} else if (BASIC.equalsIgnoreCase(this.authMethod)) {
|
||||
log.trace("authMethod before inputStream: " + resultXml);
|
||||
HttpURLConnection conn = (HttpURLConnection) qUrl.openConnection();
|
||||
conn.setRequestProperty(HttpHeaders.AUTHORIZATION, "Basic " + authToken);
|
||||
conn.setRequestProperty(HttpHeaders.ACCEPT, "application/xml");
|
||||
conn.setRequestMethod("GET");
|
||||
theHttpInputStream = conn.getInputStream();
|
||||
} else {
|
||||
theHttpInputStream = qUrl.openStream();
|
||||
}
|
||||
|
||||
resultStream = theHttpInputStream;
|
||||
if ("json".equalsIgnoreCase(resultFormatValue)) {
|
||||
resultJson = IOUtils.toString(resultStream, "UTF-8");
|
||||
resultXml = jsonUtils.convertToXML(resultJson);
|
||||
resultStream = IOUtils.toInputStream(resultXml, "UTF-8");
|
||||
}
|
||||
|
||||
if (!(emptyXml).equalsIgnoreCase(resultXml)) {
|
||||
resultNode = (Node) xpath.evaluate("/", new InputSource(resultStream), XPathConstants.NODE);
|
||||
nodeList = (NodeList) xprEntity.evaluate(resultNode, XPathConstants.NODESET);
|
||||
log.debug("nodeList.length: " + nodeList.getLength());
|
||||
for (int i = 0; i < nodeList.getLength(); i++) {
|
||||
StringWriter sw = new StringWriter();
|
||||
transformer.transform(new DOMSource(nodeList.item(i)), new StreamResult(sw));
|
||||
recordQueue.add(sw.toString());
|
||||
}
|
||||
} else {
|
||||
log.info("resultXml is equal with emptyXml");
|
||||
}
|
||||
|
||||
resumptionInt += resultSizeValue;
|
||||
|
||||
String qUrlArgument = "";
|
||||
switch (resumptionType.toLowerCase()) {
|
||||
case "scan": // read of resumptionToken , evaluate next results, e.g. OAI, iterate over items
|
||||
resumptionStr = xprResumptionPath.evaluate(resultNode);
|
||||
break;
|
||||
|
||||
case "count": // begin at one step for all records, iterate over items
|
||||
resumptionStr = Integer.toString(resumptionInt);
|
||||
break;
|
||||
|
||||
case "discover": // size of result items unknown, iterate over items (for openDOAR - 201808)
|
||||
if (resultSizeValue < 2) {
|
||||
throw new CollectorException("Mode: discover, Param 'resultSizeValue' is less than 2");
|
||||
}
|
||||
qUrlArgument = qUrl.getQuery();
|
||||
String[] arrayQUrlArgument = qUrlArgument.split("&");
|
||||
int urlOldResumptionSize = 0;
|
||||
for (String arrayUrlArgStr : arrayQUrlArgument) {
|
||||
if (arrayUrlArgStr.startsWith(resumptionParam)) {
|
||||
String[] resumptionKeyValue = arrayUrlArgStr.split("=");
|
||||
if (isInteger(resumptionKeyValue[1])) {
|
||||
urlOldResumptionSize = Integer.parseInt(resumptionKeyValue[1]);
|
||||
log.debug("discover OldResumptionSize from Url (int): " + urlOldResumptionSize);
|
||||
} else {
|
||||
log.debug("discover OldResumptionSize from Url (str): " + resumptionKeyValue[1]);
|
||||
}
|
||||
}
|
||||
}
|
||||
|
||||
if (((emptyXml).equalsIgnoreCase(resultXml))
|
||||
|| ((nodeList != null) && (nodeList.getLength() < resultSizeValue))) {
|
||||
// resumptionStr = "";
|
||||
if (nodeList != null) {
|
||||
discoverResultSize += nodeList.getLength();
|
||||
}
|
||||
resultTotal = discoverResultSize;
|
||||
} else {
|
||||
resumptionStr = Integer.toString(resumptionInt);
|
||||
resultTotal = resumptionInt + 1;
|
||||
if (nodeList != null) {
|
||||
discoverResultSize += nodeList.getLength();
|
||||
}
|
||||
}
|
||||
log.debug("discoverResultSize: " + discoverResultSize);
|
||||
break;
|
||||
|
||||
case "pagination":
|
||||
case "page": // pagination, iterate over page numbers
|
||||
pagination += 1;
|
||||
if (nodeList != null) {
|
||||
discoverResultSize += nodeList.getLength();
|
||||
} else {
|
||||
resultTotal = discoverResultSize;
|
||||
pagination = discoverResultSize;
|
||||
}
|
||||
resumptionInt = pagination;
|
||||
resumptionStr = Integer.toString(resumptionInt);
|
||||
break;
|
||||
|
||||
case "deep-cursor": // size of result items unknown, iterate over items (for supporting deep cursor in
|
||||
// solr)
|
||||
// isn't relevant -- if (resultSizeValue < 2) {throw new CollectorServiceException("Mode:
|
||||
// deep-cursor, Param 'resultSizeValue' is less than 2");}
|
||||
|
||||
resumptionStr = encodeValue(xprResumptionPath.evaluate(resultNode));
|
||||
queryParams = queryParams.replace("&cursor=*", "");
|
||||
|
||||
// terminating if length of nodeList is 0
|
||||
if ((nodeList != null) && (nodeList.getLength() < discoverResultSize)) {
|
||||
resumptionInt += (nodeList.getLength() + 1 - resultSizeValue);
|
||||
} else {
|
||||
resumptionInt += (nodeList.getLength() - resultSizeValue); // subtract the resultSizeValue
|
||||
// because the iteration is over
|
||||
// real length and the
|
||||
// resultSizeValue is added before
|
||||
// the switch()
|
||||
}
|
||||
|
||||
discoverResultSize = nodeList.getLength();
|
||||
|
||||
log
|
||||
.debug(
|
||||
"downloadPage().deep-cursor: resumptionStr=" + resumptionStr + " ; queryParams="
|
||||
+ queryParams + " resumptionLengthIncreased: " + resumptionInt);
|
||||
|
||||
break;
|
||||
|
||||
default: // otherwise: abort
|
||||
// resultTotal = resumptionInt;
|
||||
break;
|
||||
}
|
||||
|
||||
} catch (Exception e) {
|
||||
log.error(e);
|
||||
throw new IllegalStateException("collection failed: " + e.getMessage());
|
||||
}
|
||||
|
||||
try {
|
||||
if (resultTotal == -1) {
|
||||
resultTotal = Integer.parseInt(xprResultTotalPath.evaluate(resultNode));
|
||||
if (resumptionType.toLowerCase().equals("page") && !BASIC.equalsIgnoreCase(authMethod)) {
|
||||
resultTotal += 1;
|
||||
} // to correct the upper bound
|
||||
log.info("resultTotal was -1 is now: " + resultTotal);
|
||||
}
|
||||
} catch (Exception e) {
|
||||
log.error(e);
|
||||
throw new IllegalStateException("downloadPage resultTotal couldn't parse: " + e.getMessage());
|
||||
}
|
||||
log.debug("resultTotal: " + resultTotal);
|
||||
log.debug("resInt: " + resumptionInt);
|
||||
String nextQuery;
|
||||
if (resumptionInt <= resultTotal) {
|
||||
nextQuery = baseUrl + "?" + queryParams + querySize + "&" + resumptionParam + "=" + resumptionStr
|
||||
+ queryFormat;
|
||||
} else {
|
||||
nextQuery = "";
|
||||
// if (resumptionType.toLowerCase().equals("deep-cursor")) { resumptionInt -= 1; } // correct the
|
||||
// resumptionInt and prevent a NullPointer Exception at mdStore
|
||||
}
|
||||
log.debug("nextQueryUrl: " + nextQuery);
|
||||
return nextQuery;
|
||||
}
|
||||
|
||||
private boolean isInteger(String s) {
|
||||
boolean isValidInteger = false;
|
||||
try {
|
||||
Integer.parseInt(s);
|
||||
|
||||
// s is a valid integer
|
||||
|
||||
isValidInteger = true;
|
||||
} catch (NumberFormatException ex) {
|
||||
// s is not an integer
|
||||
}
|
||||
|
||||
return isValidInteger;
|
||||
}
|
||||
|
||||
// Method to encode a string value using `UTF-8` encoding scheme
|
||||
private String encodeValue(String value) {
|
||||
try {
|
||||
return URLEncoder.encode(value, StandardCharsets.UTF_8.toString());
|
||||
} catch (UnsupportedEncodingException ex) {
|
||||
throw new RuntimeException(ex.getCause());
|
||||
}
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,81 @@
|
|||
/**
|
||||
*
|
||||
*/
|
||||
|
||||
package eu.dnetlib.dhp.collection.plugin.rest;
|
||||
|
||||
import java.util.HashMap;
|
||||
import java.util.concurrent.atomic.AtomicInteger;
|
||||
import java.util.stream.Stream;
|
||||
|
||||
import org.junit.jupiter.api.*;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.dhp.aggregation.common.AggregatorReport;
|
||||
import eu.dnetlib.dhp.collection.ApiDescriptor;
|
||||
import eu.dnetlib.dhp.collection.CollectorException;
|
||||
import eu.dnetlib.dhp.collection.HttpClientParams;
|
||||
|
||||
/**
|
||||
* @author js, Andreas Czerniak
|
||||
*
|
||||
*/
|
||||
public class RestCollectorPluginTest {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(RestCollectorPluginTest.class);
|
||||
|
||||
private String baseUrl = "https://share.osf.io/api/v2/search/creativeworks/_search";
|
||||
private String resumptionType = "count";
|
||||
private String resumptionParam = "from";
|
||||
private String entityXpath = "//hits/hits";
|
||||
private String resumptionXpath = "//hits";
|
||||
private String resultTotalXpath = "//hits/total";
|
||||
private String resultFormatParam = "format";
|
||||
private String resultFormatValue = "json";
|
||||
private String resultSizeParam = "size";
|
||||
private String resultSizeValue = "10";
|
||||
// private String query = "q=%28sources%3ASocArXiv+AND+type%3Apreprint%29";
|
||||
private String query = "q=%28sources%3AengrXiv+AND+type%3Apreprint%29";
|
||||
// private String query = "=(sources:engrXiv AND type:preprint)";
|
||||
|
||||
private String protocolDescriptor = "rest_json2xml";
|
||||
private ApiDescriptor api = new ApiDescriptor();
|
||||
private RestCollectorPlugin rcp;
|
||||
|
||||
@BeforeEach
|
||||
public void setUp() {
|
||||
HashMap<String, String> params = new HashMap<>();
|
||||
params.put("resumptionType", resumptionType);
|
||||
params.put("resumptionParam", resumptionParam);
|
||||
params.put("resumptionXpath", resumptionXpath);
|
||||
params.put("resultTotalXpath", resultTotalXpath);
|
||||
params.put("resultFormatParam", resultFormatParam);
|
||||
params.put("resultFormatValue", resultFormatValue);
|
||||
params.put("resultSizeParam", resultSizeParam);
|
||||
params.put("resultSizeValue", resultSizeValue);
|
||||
params.put("queryParams", query);
|
||||
params.put("entityXpath", entityXpath);
|
||||
|
||||
api.setBaseUrl(baseUrl);
|
||||
api.setParams(params);
|
||||
|
||||
rcp = new RestCollectorPlugin(new HttpClientParams());
|
||||
}
|
||||
|
||||
@Disabled
|
||||
@Test
|
||||
public void test() throws CollectorException {
|
||||
AtomicInteger i = new AtomicInteger(0);
|
||||
final Stream<String> stream = rcp.collect(api, new AggregatorReport());
|
||||
|
||||
stream.limit(200).forEach(s -> {
|
||||
Assertions.assertTrue(s.length() > 0);
|
||||
i.incrementAndGet();
|
||||
log.info(s);
|
||||
});
|
||||
|
||||
log.info("{}", i.intValue());
|
||||
Assertions.assertTrue(i.intValue() > 0);
|
||||
}
|
||||
}
|
||||
|
|
@ -0,0 +1,54 @@
|
|||
/**
|
||||
*
|
||||
*/
|
||||
|
||||
package eu.dnetlib.dhp.collection.plugin.rest;
|
||||
|
||||
import org.junit.jupiter.api.Disabled;
|
||||
import org.junit.jupiter.api.Test;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
import eu.dnetlib.dhp.collection.HttpClientParams;
|
||||
|
||||
/**
|
||||
*
|
||||
* @author js, Andreas Czerniak
|
||||
* @date 2020-04-08
|
||||
*/
|
||||
public class RestIteratorTest {
|
||||
|
||||
private static final Logger log = LoggerFactory.getLogger(RestIteratorTest.class);
|
||||
|
||||
private String baseUrl = "https://share.osf.io/api/v2/search/creativeworks/_search";
|
||||
private String resumptionType = "count";
|
||||
private String resumptionParam = "from";
|
||||
private String resumptionXpath = "";
|
||||
private String resultTotalXpath = "//hits/total";
|
||||
private String entityXpath = "//hits/hits";
|
||||
private String resultFormatParam = "format";
|
||||
private String resultFormatValue = "Json"; // Change from lowerCase to one UpperCase
|
||||
private String resultSizeParam = "size";
|
||||
private String resultSizeValue = "10";
|
||||
private String authMethod = "";
|
||||
private String authToken = "";
|
||||
private String resultOffsetParam = "cursor";
|
||||
private String query = "q=%28sources%3ASocArXiv+AND+type%3Apreprint%29";
|
||||
|
||||
@Disabled
|
||||
@Test
|
||||
public void test() {
|
||||
|
||||
HttpClientParams clientParams = new HttpClientParams();
|
||||
|
||||
final RestIterator iterator = new RestIterator(clientParams, baseUrl, resumptionType, resumptionParam,
|
||||
resumptionXpath, resultTotalXpath, resultFormatParam, resultFormatValue, resultSizeParam, resultSizeValue,
|
||||
query, entityXpath, authMethod, authToken, resultOffsetParam);
|
||||
int i = 20;
|
||||
while (iterator.hasNext() && i > 0) {
|
||||
String result = iterator.next();
|
||||
|
||||
i--;
|
||||
}
|
||||
}
|
||||
}
|
||||
Loading…
Reference in New Issue