D-Net
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dnet-hadoop
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Commit Graph

2888 Commits

Author SHA1 Message Date
Sandro La Bruzzo 477cb10715 Merge remote-tracking branch 'origin/beta' into beta 2021-09-27 16:57:23 +02:00
Sandro La Bruzzo be79d74e3d Fixed DoiBoost generation to point to correct organization in affiliation relation 2021-09-27 16:57:04 +02:00
Claudio Atzori 474117c2e8 Merge branch 'beta' into dedup_whitelist 2021-09-27 16:41:25 +02:00
Miriam Baglioni 476a4708d6 mergin with branch beta 2021-09-27 16:02:32 +02:00
Miriam Baglioni 5ec69889db OpenCitations: creation of AS from OC 2021-09-27 16:02:06 +02:00
Claudio Atzori a53acfbc06 Merge pull request '[stats] updates in the mapping, indicators, wf' (#145) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #145
 2021-09-27 15:59:54 +02:00
Alessia Bardi b924276e18 tests to generate records for the EOSC-Future demo with the EOSC Jupyter Notebbok subject 2021-09-24 17:11:56 +02:00
Antonis Lempesis a1e1cf32d7 fixed an impala error 2021-09-24 12:57:24 +03:00
Antonis Lempesis f358cabb2b fixed typo 2021-09-22 21:50:37 +03:00
Miriam Baglioni eedf7c3310 mergin with branch beta 2021-09-22 15:18:34 +02:00
Miriam Baglioni f2118d771a first steps in the implementation of the integration of opencitations 2021-09-22 15:18:05 +02:00
Claudio Atzori 7fa60e166e Merge branch 'beta' into dedup_whitelist 2021-09-22 11:31:18 +02:00
Antonis Lempesis 421d55265d created hive action for observatory queries 2021-09-21 03:07:58 +03:00
Enrico Ottonello 92a63f78fe multiple download attempts handling if a connection to orcid server fails 2021-09-20 18:25:00 +02:00
Enrico Ottonello 0c74f5667e Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-09-20 18:12:31 +02:00
miconis 853333bdde implementation of the whitelist for similarity relations 2021-09-20 16:21:47 +02:00
Antonis Lempesis 8b681dcf1b attempt to make the observatory wf run in hive 2021-09-18 00:35:14 +03:00
Antonis Lempesis 2943287d10 fixed the definition of cc_licence, part II 2021-09-16 15:59:06 +03:00
Antonis Lempesis dd2329849f fixed the definition of cc_licence 2021-09-16 13:50:34 +03:00
Claudio Atzori 09c2eb7f62 Merge branch 'beta' into clean_relations 2021-09-16 11:09:47 +02:00
Miriam Baglioni e9ccdf853f related to #132 2021-09-15 18:44:54 +02:00
Claudio Atzori 12766bf5f2 Merge branch 'beta' into clean_relations 2021-09-15 17:18:15 +02:00
Claudio Atzori 663b1556d7 manually integrating PR#140 #140 2021-09-15 16:40:25 +02:00
Claudio Atzori ebf53a1616 added cleaning for relation fields: subRelType & relClass according to dedicated vocabs 2021-09-15 16:10:37 +02:00
Enrico Ottonello 8b804e7fe1 removed unused imports 2021-09-14 17:30:52 +02:00
Enrico Ottonello aefa36c54b other task executions go ahead if UnknownHostException happens on a single task 2021-09-14 17:26:15 +02:00
Antonis Lempesis de9bf3a161 added cc_licences and abstracts in observatory db 2021-09-14 01:29:08 +03:00
Antonis Lempesis 9b1936701c fixed yet another typo 2021-09-13 21:07:44 +03:00
Antonis Lempesis 8fc89ae822 moved context table creation before indicators 2021-09-13 14:33:23 +03:00
Antonis Lempesis 461bf90ca6 fixed the gold_oa definition 2021-09-13 11:10:30 +03:00
Antonis Lempesis 43852bac0e creating other::other concept for all contexts 2021-09-13 01:36:41 +03:00
Antonis Lempesis f13cca7e83 moved dependencies of indicators before them... 2021-09-08 23:07:58 +03:00
Antonis Lempesis c6ada217a1 fixed typo 2021-09-08 22:34:59 +03:00
Antonis Lempesis 1250ae197f using new indicators for the definition of peerreviewed, gold, and green 2021-09-08 14:08:43 +03:00
Antonis Lempesis ccee451dde added indicators of sprint 2 in monitor db 2021-09-07 23:17:13 +03:00
Sandro La Bruzzo aed29156c7 changed behavior in transformation job, that doesn't fail at first error 2021-09-07 19:05:46 +02:00
Sandro La Bruzzo 3c6fc2096c fix bug on oai iterator that skip record cleaned 2021-09-07 10:46:26 +02:00
Sandro La Bruzzo d4dadf6d77 reduced max number of PID in Relatedentity 2021-09-02 14:21:24 +02:00
Sandro La Bruzzo 9f8a80deb7 fixed wrong import of unresolved relation in openaire 2021-09-01 14:16:27 +02:00
Alessia Bardi 3762b17f7b added VERSIOn and PART relationship and re-ordered according to my personal and obviously possibly biased 
ordering
 2021-08-31 20:20:05 +02:00
Sandro La Bruzzo e8b3cb9147 Implemented method to download delta updates in EBI Links 2021-08-30 09:32:45 +02:00
Alessia Bardi ccf4103a25 keep the original url if the decoder fails for any reason 2021-08-25 10:07:58 +02:00
Sandro La Bruzzo 45898c71ac fixed wrong doi in pubmed 2021-08-24 15:20:04 +02:00
Alessia Bardi 00a28c0080 originalId was renamed to acronym 2021-08-23 15:02:21 +02:00
Alessia Bardi f19b04d41b code formatting after mvn compile 2021-08-23 14:33:39 +02:00
Alessia Bardi 931f430129 Merge branch 'beta' into datasource_model_eosc_beta 2021-08-23 11:57:21 +02:00
Alessia Bardi 4c1474e693 Dealing with #6859#note-2: we have to decode URLs to avoid & and other chars encoded becasue of the original XML representation of data 2021-08-20 17:03:30 +02:00
Miriam Baglioni 5f8ccbc365 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-08-20 11:13:47 +02:00
Miriam Baglioni 882abb40e4 CrossrefDump - 2021-08-20 11:12:53 +02:00
Miriam Baglioni 45c62609af CrossrefDump - modified because parameter file was moved 2021-08-20 11:12:31 +02:00
Miriam Baglioni 35880c0e7b CrossrefDump - changed the wf to be able to resume from one of the steps 2021-08-20 11:11:35 +02:00
Miriam Baglioni f3b6c392c1 CrossrefDump - moving parameter file under folder crossref_dump_reader 2021-08-20 11:10:58 +02:00
Miriam Baglioni 65822400ce CrossrefDump - added new parameter file that was missing 2021-08-20 11:10:35 +02:00
Alessia Bardi a053e1513c different funders in blacklist from BETA and PROD aggregator 2021-08-19 11:32:27 +02:00
Alessia Bardi 812bd54c57 different funders in blacklist from BETA and PROD aggregator 2021-08-19 11:30:14 +02:00
Miriam Baglioni a65d3caaea Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2021-08-19 10:29:10 +02:00
Miriam Baglioni e5cf11d088 change open access route to result matching hbm to gold 2021-08-19 10:29:04 +02:00
Claudio Atzori 7c0c67bdd6 added mock pom 2021-08-13 17:45:53 +02:00
Claudio Atzori 82086f3422 fixed directory name 2021-08-13 17:42:14 +02:00
Claudio Atzori bc7068106c added crossref download oozie workflow 2021-08-13 17:19:44 +02:00
Claudio Atzori 2c0a05f11a manually merged PR#139 2021-08-13 17:15:53 +02:00
Claudio Atzori d43667d857 Merge pull request 'Automatic download of Crossref' (#138) from crossref_dw_wf into beta 
Reviewed-on: #138
 2021-08-13 17:10:10 +02:00
Miriam Baglioni 5856ca8a7b merging with branch beta - resolved conflicts 2021-08-13 16:45:45 +02:00
Miriam Baglioni 6fec71e8d2 removed the specific of the infra we are running the wf from the wf name 2021-08-13 16:39:02 +02:00
Miriam Baglioni ed7e28490a change in sh 2021-08-13 16:19:01 +02:00
Claudio Atzori 7743d0f919 consolidated dnet wf profiles into the same submodule 2021-08-13 16:14:54 +02:00
Miriam Baglioni 6eb7508995 mergin with branch beta 2021-08-13 16:07:04 +02:00
Claudio Atzori f74adc4752 added DownloadCSV2 as alternative implementation of the same download procedure 2021-08-13 15:52:15 +02:00
Claudio Atzori 5f0903d50d fixed CSV downloader & tests 2021-08-13 14:17:54 +02:00
Claudio Atzori 17cefe6a97 [HBM] removed stale replace option 2021-08-13 12:43:59 +02:00
Claudio Atzori 7ee2757fcd fixed DownloadCSV parameters spec; workflow patching the hostedby replaces the graph content (publication, datasource) rather than creating a copy 2021-08-13 12:41:01 +02:00
Claudio Atzori c3ad4ab701 minor fixes 2021-08-13 12:23:15 +02:00
Claudio Atzori baed5e3337 test classes moved in specific components 2021-08-13 12:14:47 +02:00
Claudio Atzori 3359f73fcf cleanup & best practices 2021-08-13 12:00:42 +02:00
Miriam Baglioni f4ec81c92c mergin with branch beta 2021-08-13 10:31:35 +02:00
Miriam Baglioni dc8b05b39e Hosted By Map - changed the association with the datasource id for the hostedby element: there is no more the need to compute it. With the new HBM it is already the id in the graph 2021-08-13 10:18:25 +02:00
Miriam Baglioni 32fd75691f refactoring 2021-08-13 10:15:42 +02:00
Miriam Baglioni 01db1f8bc4 GetCSV refactoring - removed not needed import 2021-08-13 10:14:17 +02:00
Miriam Baglioni 964a46ca21 GetCSV refactoring - modified due to movement of classes 2021-08-13 10:11:18 +02:00
Miriam Baglioni eaf077fc34 GetCSV refactoring - removed not needed dependency 2021-08-13 10:08:58 +02:00
Miriam Baglioni 5f674efb0c moved dependency version in external pom 2021-08-13 10:07:53 +02:00
Miriam Baglioni 5cd5714530 GetCSV refactoring - added ignore annotation for fields not in input csv 2021-08-13 10:06:49 +02:00
Miriam Baglioni ed183d878e GetCSV refactoring - modified test classes due to change in the model of projects and programme 2021-08-13 09:28:51 +02:00
Miriam Baglioni 8769dd8eef GetCSV refactoring - refactoring due to movement of classes 2021-08-12 18:20:56 +02:00
Miriam Baglioni 6b9e1bf2e3 GetCSV refactoring - removing not needed dependency 2021-08-12 18:17:50 +02:00
Miriam Baglioni d57b2bb927 GetCSV refactoring - removing not needed dependency 2021-08-12 18:12:51 +02:00
Miriam Baglioni 9da74b544a GetCSV refactoring - refactoring due to movement of classes 2021-08-12 18:12:15 +02:00
Miriam Baglioni ab8abd61bb GetCSV refactoring - refactoring due to movement of classes 2021-08-12 18:11:07 +02:00
Miriam Baglioni 335a824e34 GetCSV refactoring - fixed issue 2021-08-12 18:10:10 +02:00
Miriam Baglioni f0845e9865 GetCSV refactoring - refactoring due to movement of classes 2021-08-12 18:04:58 +02:00
Miriam Baglioni 7a789423aa GetCSV refactoring - refactoring due to movement of classes 2021-08-12 18:04:27 +02:00
Miriam Baglioni e9fc3ef3bc GetCSV refactoring - changed to use the new class to get and write the csv file 2021-08-12 18:03:41 +02:00
Miriam Baglioni 4317211a2b GetCSV refactoring - refactoring due to movement 2021-08-12 18:03:14 +02:00
Miriam Baglioni b62cd656a7 GetCSV refactoring - changed the model to store only the information needed 2021-08-12 18:01:10 +02:00
Miriam Baglioni d36e925277 GetCSV refactoring - moved under model package 2021-08-12 18:00:21 +02:00
Miriam Baglioni 6e84b3951f GetCSV refactoring - moving classes to dhp-common that have dependency with GetCSV class (that was located in graph-mapper) 2021-08-12 17:57:41 +02:00
Claudio Atzori 9587d4aee8 Merge branch 'beta' into hostedbymap 2021-08-12 17:04:30 +02:00
Claudio Atzori 86d940044c added test to verify bad records from FWF-E-Book-Library 2021-08-12 11:32:56 +02:00
Claudio Atzori 8cdce59e0e [graph raw] let the mapping exceptions propagate 2021-08-12 11:32:26 +02:00
Miriam Baglioni 08dd2b2102 moving the dependency version to the external pom file 2021-08-11 18:09:41 +02:00
Miriam Baglioni ac417ca798 removed not needed test resource 2021-08-11 17:50:33 +02:00
Miriam Baglioni e33daaeee8 reverting 2021-08-11 17:46:19 +02:00
Miriam Baglioni 785db1d5b2 refactoring 2021-08-11 17:44:07 +02:00
Miriam Baglioni 95e5482bbb removing not needed dependency 2021-08-11 17:42:26 +02:00
Miriam Baglioni b966329833 reverting 2021-08-11 17:37:00 +02:00
Miriam Baglioni 8ad7c71417 reverting 2021-08-11 17:36:12 +02:00
Miriam Baglioni 0e1a6bec20 reverting 2021-08-11 17:32:29 +02:00
Miriam Baglioni c6a2a780a9 reverting 2021-08-11 17:30:17 +02:00
Miriam Baglioni b6b58bba28 reverting 2021-08-11 17:25:37 +02:00
Miriam Baglioni 804589eb30 reverting 2021-08-11 17:23:35 +02:00
Miriam Baglioni d688749ad9 reverting 2021-08-11 17:22:28 +02:00
Miriam Baglioni 524c06e028 reverting 2021-08-11 17:20:30 +02:00
Miriam Baglioni 7aa3260729 reverting 2021-08-11 17:18:45 +02:00
Miriam Baglioni 55fc500d8d reverting 2021-08-11 17:17:48 +02:00
Miriam Baglioni 8229632839 adding assertions to the mapping of the unibi part of gold list 2021-08-11 16:36:01 +02:00
Miriam Baglioni b1c6140ebf removed all comments in Italian 2021-08-11 16:23:33 +02:00
Miriam Baglioni 52c18c2697 removed not needed test class. Teh functionality has been moved 2021-08-11 16:16:55 +02:00
Miriam Baglioni 8da3a25cf6 merging with branch beta 2021-08-11 15:55:34 +02:00
Claudio Atzori 9f4db73f30 updated/fixed unit tests 2021-08-11 15:02:51 +02:00
Claudio Atzori 61d811ba53 suggestions from intellij 2021-08-11 12:18:20 +02:00
Claudio Atzori 2ee21da43b suggestions from SonarLint 2021-08-11 12:13:22 +02:00
Miriam Baglioni b954fe9ba8 mergin with branch beta 2021-08-11 10:12:46 +02:00
Miriam Baglioni b688567db5 hostedbymap - modified part of test to check the bestaccessright changed 2021-08-11 10:12:10 +02:00
Miriam Baglioni 9731a6144a hostedbymap - in case the journal is open access the access may be changed also for the best access right in the result 2021-08-10 17:49:45 +02:00
Miriam Baglioni a90bac3bc9 Graph Dump - added method to test class to verify addition of validation date in projects for community result 2021-08-09 16:36:54 +02:00
Miriam Baglioni bd0d7bfba7 Graph Dump - added resources for testing addition of validation date in project for communityresult 2021-08-09 16:36:17 +02:00
Miriam Baglioni 8daaa32e90 Graph Dump - added resources for testing 2021-08-09 15:46:29 +02:00
Miriam Baglioni bc9e3a06ba Graph Dump - extended the test class 2021-08-09 15:46:06 +02:00
Miriam Baglioni 2efa5abda5 refactoring 2021-08-09 12:28:36 +02:00
Claudio Atzori 577f3b1ac8 added dnet workflows responsible for the graph construction, enrichment, provision 2021-08-09 11:53:58 +02:00
Miriam Baglioni da20fceaf7 removed all the part related to the crossref dump download since it is done in a separate workflow 2021-08-09 11:53:45 +02:00
Claudio Atzori 964f97ed4d cleanup 2021-08-09 11:53:06 +02:00
Miriam Baglioni 54a6cbb244 CrossrefDump - put token among the parameters 2021-08-09 11:41:10 +02:00
Miriam Baglioni b7079804cb CrossrefDump - put token among the parameters 2021-08-09 11:34:35 +02:00
Miriam Baglioni a5f82f442b Merge branch 'beta' into doiboost_wf 2021-08-09 11:17:51 +02:00
Miriam Baglioni b6dcf89d22 mergin with branch beta 2021-08-09 11:14:43 +02:00
Miriam Baglioni eff499af9f added new tests and changed the test example 2021-08-09 11:12:30 +02:00
Miriam Baglioni 5d70f842eb mergin with branch beta 2021-08-06 18:57:09 +02:00
Miriam Baglioni c3931557e3 extended the logic of the dump to consider the validation date in the relation (also in the dumped result for communities and funders at the level of the project), the extention on the instance for the APC, the pid, the alternate identifiers, and the extention of the AccessRight to store the OpenAccessRoute. Added new resourec for testing and extended the old class to verify the new dump. Fixed also issue on relation dump: only relation whose source and target are entities in the graph are dumped. The same hold for references to projects 2021-08-06 18:56:18 +02:00
Claudio Atzori 66f398fe6f Merge pull request '[stats] fixed a typo' (#133) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: #133
 2021-08-06 14:29:57 +02:00
Miriam Baglioni 6bd1eca7e0 merge branch with beta 2021-08-05 15:23:32 +02:00
Miriam Baglioni 73dc082927 added new dumped field (openaccessroute, pid and alternate identifier at the level of the instance) and the bipFinder measure at the level of the result 2021-08-05 15:20:50 +02:00
Miriam Baglioni ee13da9258 merge branch with master 2021-08-05 11:34:20 +02:00
Miriam Baglioni bd096f5170 removed not needed param file 2021-08-05 10:55:43 +02:00
Miriam Baglioni 5faeefbda8 added script to download the dump,changed the workflow input paramenters 2021-08-05 10:54:03 +02:00
Miriam Baglioni 1965e4eece new workflow for downloading the dump of crossref and unpack it 2021-08-04 18:29:03 +02:00
Claudio Atzori 83c04e5d28 mapping test for dataset records adapted to reflect the delegated pid authority (zenodo) 2021-08-04 10:37:57 +02:00
Miriam Baglioni b4eb026c8b mergin with branch beta 2021-08-04 10:21:37 +02:00
Miriam Baglioni c7b71647c6 Hosted By Map - modification of the resource for testing the presence of only one entry per datasource id 2021-08-04 10:20:02 +02:00
Miriam Baglioni eb8c3f8594 Hosted By Map - test modified because of the application of the new aggregator on datasources 2021-08-04 10:19:17 +02:00