using new indicators for the definition of peerreviewed, gold, and green
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@ -1,62 +0,0 @@
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----------------------------------------------------
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-- Shortcuts for various definitions in stats db ---
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----------------------------------------------------
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-- Peer reviewed:
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-- Results that have been collected from Crossref
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create table ${stats_db_name}.result_peerreviewed as
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with peer_reviewed as (
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select distinct r.id as id
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from ${stats_db_name}.result r
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join ${stats_db_name}.result_sources rs on rs.id=r.id
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join ${stats_db_name}.datasource d on d.id=rs.datasource
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where d.name='Crossref')
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select distinct peer_reviewed.id as id, true as peer_reviewed
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from peer_reviewed
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union all
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select distinct r.id as id, false as peer_reviewed
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from ${stats_db_name}.result r
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left outer join peer_reviewed pr on pr.id=r.id
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where pr.id is null;
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-- Green OA:
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-- OA results that are hosted by an Institutional repository and have NOT been harvested from a DOAJ journal.
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create table ${stats_db_name}.result_greenoa as
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with result_green as (
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select distinct r.id as id
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from ${stats_db_name}.result r
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join ${stats_db_name}.result_datasources rd on rd.id=r.id
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join ${stats_db_name}.datasource d on d.id=rd.datasource
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left outer join (
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select rd.id from ${stats_db_name}.result_datasources rd
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join ${stats_db_name}.datasource d on rd.datasource=d.id
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join ${stats_db_name}.datasource_sources sds on sds.id=d.id
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join ${stats_db_name}.datasource sd on sd.id=sds.datasource
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where sd.name='DOAJ-ARTICLES'
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) as doaj on doaj.id=r.id
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where r.bestlicence in ('Open Access', 'Open Source') and d.type='Institutional Repository' and doaj.id is null)
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select distinct result_green.id, true as green
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from result_green
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union all
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select distinct r.id as id, false as green
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from ${stats_db_name}.result r
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left outer join result_green rg on rg.id=r.id
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where rg.id is null;
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-- GOLD OA:
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-- OA results that have been harvested from a DOAJ journal.
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create table ${stats_db_name}.result_gold as
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with result_gold as (
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select distinct r.id as id
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from ${stats_db_name}.result r
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join ${stats_db_name}.result_datasources rd on rd.id=r.id
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join ${stats_db_name}.datasource d on d.id=rd.datasource
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join ${stats_db_name}.datasource_sources sds on sds.id=d.id
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join ${stats_db_name}.datasource sd on sd.id=sds.datasource
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where r.type='publication' and r.bestlicence='Open Access' and sd.name='DOAJ-Articles')
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select distinct result_gold.id, true as gold
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from result_gold
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union all
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select distinct r.id, false as gold
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from ${stats_db_name}.result r
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where r.id not in (select id from result_gold);
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@ -0,0 +1,22 @@
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----------------------------------------------------
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-- Shortcuts for various definitions in stats db ---
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----------------------------------------------------
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-- Peer reviewed:
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create table ${stats_db_name}.result_peerreviewed as
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select r.id as id, case when doi.doi_from_crossref=1 and grey.grey_lit=0 then true else false end as peer_reviewed
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from result r
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left outer join ${stats_db_name}.indi_pub_doi_from_crossref doi on doi.id=r.id
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left outer join ${stats_db_name}.indi_pub_grey_lit grey on grey.id=r.id;
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-- Green OA:
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create table ${stats_db_name}.result_greenoa as
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select r.id, case when green.green_oa=1 then true else false end as green
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from ${stats_db_name}.result r
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left outer join ${stats_db_name}.indi_pub_green_oa green on green.id=r.id;
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-- GOLD OA:
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create table ${stats_db_name}.result_gold as
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select r.id, case when green.green_oa=1 then true else false end as green
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from ${stats_db_name}.result r
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left outer join ${stats_db_name}.indi_pub_gold_oa green on green.id=r.id;
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@ -239,14 +239,27 @@
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<param>stats_db_name=${stats_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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</hive2>
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<ok to="Step16"/>
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<ok to="Step16-createIndicatorsTables"/>
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<error to="Kill"/>
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</action>
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<action name="Step16">
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<action name="Step16-createIndicatorsTables">
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<shell xmlns="uri:oozie:shell-action:0.1">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<exec>indicators.sh</exec>
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<argument>${stats_db_name}</argument>
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<argument>${wf:appPath()}/scripts/step16-createIndicatorsTables.sql</argument>
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<file>indicators.sh</file>
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</shell>
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<ok to="Step16_1-definitions"/>
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<error to="Kill"/>
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</action>
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<action name="Step16_1-definitions">
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<hive2 xmlns="uri:oozie:hive2-action:0.1">
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<jdbc-url>${hive_jdbc_url}</jdbc-url>
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<script>scripts/step16.sql</script>
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<script>scripts/step16_1-definitions.sql</script>
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<param>stats_db_name=${stats_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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</hive2>
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@ -272,24 +285,11 @@
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<param>stats_db_name=${stats_db_name}</param>
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<param>openaire_db_name=${openaire_db_name}</param>
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</hive2>
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<ok to="Step16_7-createIndicatorsTables"/>
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<ok to="Step18-contexts"/>
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<error to="Kill"/>
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</action>
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<action name="Step16_7-createIndicatorsTables">
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<shell xmlns="uri:oozie:shell-action:0.1">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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<exec>indicators.sh</exec>
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<argument>${stats_db_name}</argument>
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<argument>${wf:appPath()}/scripts/step16_7-createIndicatorsTables.sql</argument>
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<file>indicators.sh</file>
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</shell>
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<ok to="Step17"/>
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<error to="Kill"/>
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</action>
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<action name="Step17">
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<action name="Step18-contexts">
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<shell xmlns="uri:oozie:shell-action:0.1">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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@ -298,11 +298,11 @@
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<argument>${stats_db_name}</argument>
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<file>contexts.sh</file>
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</shell>
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<ok to="Step19"/>
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<ok to="Step19-finalize"/>
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<error to="Kill"/>
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</action>
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<action name="Step19">
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<action name="Step19-finalize">
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<shell xmlns="uri:oozie:shell-action:0.1">
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<job-tracker>${jobTracker}</job-tracker>
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<name-node>${nameNode}</name-node>
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