Miriam Baglioni
f2352e8a78
changed in the classes the path for the property files for the propagation of community from project
2023-12-22 11:43:34 +01:00
Miriam Baglioni
009730b3d1
added properties file in the forlder for the workflow of orcid propagation. Changes the path in the classes implementing the propagationchanged the path to the parameter file in the class for entitytoorganization propagation
2023-12-22 11:42:09 +01:00
Miriam Baglioni
89f269c7f4
changed the path to the parameter file in the class for entitytoorganization propagation
2023-12-22 11:37:50 +01:00
Miriam Baglioni
b06aea0adf
adding the bulkTag parameter file in the folder for the oozie workflow for bulkTagging. Changes the path in the class
2023-12-22 11:35:37 +01:00
Miriam Baglioni
3afd4aa57b
adjustments for country propagation
2023-12-22 11:27:30 +01:00
ffdd03d2f4
Monitor Irish Stats WF
...
Parameters (with examples):
stats_db_name=openaire_beta_stats_20231208
monitor_irish_db_name=openaire_beta_stats_monitor_ie_20231208b
monitor_irish_db_prod_name=openaire_beta_stats_monitor_ie
graph_db_name=openaire_beta_20231208
monitor_irish_db_shadow_name=openaire_beta_stats_monitor_ie_shadow
hive_timeout=150000
hadoop_user_name=dnet.beta
resumeFrom=Step1-buildIrishMonitorDB
2023-12-22 11:05:24 +02:00
40b98d8182
Changes to indicators and funders definition
...
- Changes result_refereed definition
- Added result_country indicator
- Added indi_pub_green_with_license indicator
- Added country from jurisdiction to funders
2023-12-22 10:29:20 +02:00
Claudio Atzori
62104790ae
added metaresourcetype to the result hive DB view
2023-12-21 12:27:10 +01:00
Claudio Atzori
106968adaa
Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop
2023-12-21 12:26:29 +01:00
Claudio Atzori
a8a4db96f0
added metaresourcetype to the result hive DB view
2023-12-21 12:26:19 +01:00
Miriam Baglioni
5011c4d11a
refactoring after compiletion
2023-12-20 15:57:26 +01:00
Miriam Baglioni
4740c808f7
-
2023-12-20 14:26:54 +01:00
Miriam Baglioni
d410ea8a41
added needed parameter
2023-12-19 12:15:01 +01:00
37e36baf76
updated workflow for generation of Scholix Datasource's to use mdstore transactions
2023-12-18 16:05:35 +01:00
9d39845d1f
uploaded input parameters on CreateBaseline WF
2023-12-18 12:23:12 +01:00
15fd93a2b6
uploaded input parameters on CreateBaseline WF
2023-12-18 12:21:55 +01:00
9d342a47da
updated the transformation Baseline workflow to include mdstore rollback/commit action
2023-12-18 11:48:57 +01:00
1fbd4325f5
Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop
2023-12-18 11:47:17 +01:00
1f1a6a5f5f
updated the transformation Baseline workflow to include mdstore rollback/commit action
2023-12-18 11:47:00 +01:00
Miriam Baglioni
3eca5d2e1c
-
2023-12-18 09:55:27 +01:00
Miriam Baglioni
01ce0b9c76
[doiboost - preprocess] remove transition to orcid preparation from sequence of steps at the beginning of the workflow
2023-12-15 12:24:55 +01:00
Miriam Baglioni
0d8e496a63
-
2023-12-15 12:16:43 +01:00
Claudio Atzori
1726f49790
code formatting
2023-12-15 10:37:02 +01:00
Claudio Atzori
ff924215b8
[graph provision] added tests for new peerreviewed field
2023-12-12 11:21:30 +01:00
Claudio Atzori
7e8eff40c1
[graph provision] added tests for the new model fields
2023-12-12 08:54:15 +01:00
Miriam Baglioni
8752d275fa
removed not needed parameter
2023-12-09 15:24:45 +01:00
Miriam Baglioni
d4eedada71
adjusting workflow definition
2023-12-09 15:20:11 +01:00
Claudio Atzori
cb71a7936b
[graph cleaning] avoid stack overflow error when navigating Oaf objects declaring an Enum
2023-12-07 23:09:54 +01:00
Claudio Atzori
70eb1796b2
logging typo
2023-12-07 14:08:04 +01:00
Claudio Atzori
c381bacee0
[enrichment] passing the community API base URL
2023-12-07 14:07:11 +01:00
Miriam Baglioni
336fb31d87
[community_result_propagation] adjusting starting poit of workflow
2023-12-07 10:27:25 +01:00
Miriam Baglioni
c0cde53bf6
[bulktagging] setting first step of bulktaggin as the copy of the entities and relations not involved in the tagging'
2023-12-07 10:08:35 +01:00
Miriam Baglioni
616622d2bb
first version of the workflow single step
2023-12-07 09:59:52 +01:00
Claudio Atzori
259c69e446
[orcid enrichment] fixed workflow definition
2023-12-06 19:41:53 +01:00
Claudio Atzori
431c6bb08a
[dedup] added isLookupUrl to the graph consistency workflow definition, required now by the entity grouping phase
2023-12-06 11:06:46 +01:00
Claudio Atzori
321922772b
added serialization for the new fields imported for the Irish tender
2023-12-05 16:37:04 +01:00
Claudio Atzori
c5b7253130
[community_organization propagation] fixed workflow parameters
2023-12-05 09:13:33 +01:00
Claudio Atzori
3c3bdb8318
[bulktagging] fixed workflow parameters
2023-12-05 09:08:48 +01:00
Claudio Atzori
2a233a89aa
[graph grouping] added isLookupUrl to the workflow definition, passed to the grouping spark aciton
2023-12-03 13:32:52 +01:00
Claudio Atzori
178a14c491
code formatting
2023-12-03 13:31:58 +01:00
3caf6ff27e
Extracted the correct original type to pass to instanceTypeMapping in Crossref Mapping
2023-12-01 16:33:56 +01:00
Claudio Atzori
511a98dd80
fixed doiboost process workflow, removed references to the ProcessORCID step
2023-12-01 16:21:53 +01:00
Claudio Atzori
09d061e90b
Merge branch 'beta' into orcid_import
2023-12-01 15:05:35 +01:00
Claudio Atzori
93a700742a
Merge pull request 'Changes for tables and creation of the new indicator indi_is_result_accessible' ( #363 ) from antonis.lempesis/dnet-hadoop:beta into beta
...
Reviewed-on: #363
2023-12-01 15:05:23 +01:00
Claudio Atzori
0c3c9ea43d
Merge pull request 'StatsDB workflow to export actionsets about OA routes, diamond, and publicly-funded' ( #355 ) from dimitris.pierrakos/dnet-hadoop:beta into beta
...
Reviewed-on: #355
2023-12-01 15:03:56 +01:00
Claudio Atzori
33cb483c75
using objectSubType as originalType in Crossref2Oaf, code formatting
2023-12-01 15:03:05 +01:00
c9d995dde0
New institutions added
2023-12-01 15:44:35 +02:00
a397112cb8
Add new indicator
...
Add indi_pub_publicly_funded
2023-12-01 15:00:18 +02:00
76594ded23
Changes to indicators
...
Fixes on open access colours indicators
- indi_pub_green_oa
- indi_pub_gold_oa
- indi_pub_hybrid
- indi_pub_bronze_oa
- indi_pub_diamond
2023-12-01 13:38:19 +02:00
Claudio Atzori
622fafbd2e
Merge branch 'beta' into orcid_import
2023-12-01 12:28:14 +01:00
bf0fd27c36
Removed unused function
...
Applied PR Comment of Giambattista in the PR
2023-12-01 12:16:42 +01:00
48430a32a6
Update StatsAtomicActionsJob.java
...
Added indi_funded_result_with_fundref indicator
2023-12-01 11:35:01 +02:00
cdfb7588dd
code formatting
2023-11-30 15:31:42 +01:00
5e22b67b8a
Merge remote-tracking branch 'origin/beta' into orcid_import
2023-11-30 15:27:46 +01:00
f718caaac9
Added copy of the untouched entities of the graph
2023-11-30 14:51:00 +01:00
7b5e04f37e
removed Orcid intersection on DOIBoost
2023-11-30 14:36:50 +01:00
Claudio Atzori
6f10791e77
Merge branch 'beta' into propagationapi
2023-11-30 14:20:18 +01:00
Claudio Atzori
4e1aac2e2f
resolved conflict in pom.xml before applying the changes from [COAR based resource types & Irish tender] #350
2023-11-29 14:37:52 +01:00
86b5775e08
added vocabulary in instanceTypeMapping for
...
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
2023-11-29 13:15:43 +01:00
c96ff54b45
Merge remote-tracking branch 'origin/resource_types' into resource_types
2023-11-29 12:45:41 +01:00
af1c2634b3
added instanceTypeMapping original field in the mapping of
...
- DOIBoost
- Datacite
- PubMed
- Scholexplorer Datasource
2023-11-29 12:45:30 +01:00
279100fa52
added test
2023-11-29 11:17:58 +01:00
59111713fa
added comment
2023-11-28 09:00:48 +01:00
6f4d0c05ea
Implemented Author MErger for ORCID that takes in account the case when name and surname are swapped
2023-11-28 08:43:56 +01:00
Miriam Baglioni
8eb70e6657
refactoring
2023-11-27 15:13:15 +01:00
Miriam Baglioni
e3cce9a5a0
mergin with branch beta
2023-11-27 15:10:55 +01:00
Miriam Baglioni
48e0427a23
changed the parameter from production to baseURL. Fixed issue in tagging configuration
2023-11-27 15:10:27 +01:00
34a4b3cbdf
Implemented ORCID Enrichment
2023-11-24 12:39:58 +01:00
Claudio Atzori
1763d377ad
code formatting
2023-11-23 16:33:24 +01:00
359e81b7a6
Update StatsAtomicActionsJob.java
...
Bug fix for duplicate bronze checks
2023-11-23 10:48:55 +02:00
Claudio Atzori
8fb05888fd
Merge branch 'master' into 9120_bipranker_clean_working_dir
2023-11-22 14:10:30 +01:00
Claudio Atzori
2c77638bf5
Merge branch 'beta' into cleaning_8898
2023-11-22 14:00:10 +01:00
Claudio Atzori
745039ad5b
Merge branch 'beta' into 9117_pubmed_affiliations
2023-11-22 13:52:53 +01:00
Claudio Atzori
11a1207f9c
[graph cleaning] applying coar based vocabularies in bulk
2023-11-22 12:22:14 +01:00
a94a54a2d0
Changes for tables and creation of the new indicator indi_is_result_accessible
...
- Drop table statements for all tables to avoid duplicates in case of wf rerun
- Add pdfsaggregated step to create the indi_is_result_accessible table. This step is executed on the new impala cluster only, since the pdfaggregation_i is updated on this cluster.
2023-11-15 14:32:18 +02:00
Miriam Baglioni
b177cd5a0a
Project propagation via communityAPI instead of using IS via IIS
2023-11-14 16:25:09 +01:00
Miriam Baglioni
eaf0a702de
-
2023-11-14 14:53:34 +01:00
6ce36b3e41
Implemented ORCID Workflow on DHP-Aggregation for retrieving ORCID DUMP and generating tables
2023-11-14 12:04:29 +01:00
d524e30866
Changes to actionsets
...
Resolve comments from
#355
2023-11-14 09:46:52 +02:00
671ba8a5a7
Clear working dir in bipranker workflow
2023-11-07 18:35:05 +02:00
Miriam Baglioni
5bc97615d5
-
2023-11-03 15:35:10 +01:00
Miriam Baglioni
7b1e34f159
refactoring
2023-11-03 15:30:01 +01:00
Miriam Baglioni
638ad9e74f
changing test for new implementation
2023-11-03 15:06:50 +01:00
Miriam Baglioni
edcb17ca98
refactoring and test
2023-11-03 13:01:14 +01:00
Claudio Atzori
5f1ed61c1f
merging from bulkTag branch
2023-11-03 12:51:37 +01:00
Claudio Atzori
8c03c41d5d
applying changes from beta
2023-11-03 12:08:39 +01:00
7e34dde774
Renaming input param for crossref input path
2023-11-02 17:47:04 +02:00
24c3f92d87
Change the description of the workflow
2023-11-02 17:46:51 +02:00
6ce9b600c1
Add actionset creation for pubmed affiliations
2023-11-02 17:46:39 +02:00
94089878fd
Adjust tests to new WF input params
2023-11-02 17:46:13 +02:00
Miriam Baglioni
937ff6a7c7
-
2023-10-31 15:56:08 +01:00
Miriam Baglioni
a737dd47b6
removed not needed test class
2023-10-31 15:54:49 +01:00
Miriam Baglioni
c80b768af0
test for project propagation
2023-10-31 15:49:42 +01:00
Miriam Baglioni
e9a20fc8f6
mergin with branch beta
2023-10-31 14:36:03 +01:00
Claudio Atzori
262d7c581b
[graph cleaning] implemented further suggestions from https://support.openaire.eu/issues/8898
2023-10-31 14:34:10 +01:00
2090003ea9
Adjust tests to new WF input params
2023-10-26 13:47:06 -07:00
Miriam Baglioni
0097f4e64b
Removed Query community testing. Removed package from common related to the interaction with Zenodo since it was moved to the dump-project
2023-10-26 09:38:09 +02:00
a82aaf57b2
Renaming input param for crossref input path
2023-10-25 12:05:02 -07:00
Claudio Atzori
b3a61ea955
Merge branch 'beta' into url_validation
2023-10-25 14:22:56 +02:00
89c4dfbaf4
StatsDB workflow to export actionsets about OA routes, diamond, and publicly-funded
...
A new oozie workflow capable to read from the stats db to produce a new actionSet for updating results with:
- green_oa ={true, false}
- openAccesColor = {gold, hybrid, bronze}
- in_diamond_journal={true, false}
- publicly_funded={true, false}
Inputs:
- outputPath
- statsDB
2023-10-24 09:48:23 +03:00
Miriam Baglioni
5c5a195e97
refactoring and fixing issue on property name
2023-10-23 11:26:17 +02:00
Claudio Atzori
7fc621cdec
added defaults to the graph resolution workflow config-default.xml
2023-10-20 22:28:12 +02:00
Miriam Baglioni
70b78a40c7
removed file from different propagation
2023-10-20 15:50:49 +02:00
Miriam Baglioni
f206ff42d6
modified code to use the the API. Removing not needed parameters. Rewritten the code to exploit the parallel stream on the entity types
2023-10-20 15:49:41 +02:00
Miriam Baglioni
34358afe75
modified resource file, workflow anf default-config. Add 3g of memory Overhead and specified the shuffle partition in the wf confiduration. Removed the multiple instantiation in the wf because of different implementation of the spark job
2023-10-20 15:48:27 +02:00
Miriam Baglioni
18bfff8af3
adding test classes and modifying test for bulktag
2023-10-20 15:47:03 +02:00
Miriam Baglioni
69dac91659
adding the new code to use the API instead of the Information Service
2023-10-20 15:45:52 +02:00
aad5982bf1
Change the description of the workflow
2023-10-20 12:48:21 +03:00
Miriam Baglioni
a4214ced1e
fixing issue on propagation organization. added --config to workflow definition. added oozie_app to communtiy project
2023-10-20 10:14:20 +02:00
6b19dcee80
Add actionset creation for pubmed affiliations
2023-10-19 19:58:25 +03:00
Claudio Atzori
2b9d0416ec
[graph raw] URL Validator to accept double slashes
2023-10-19 16:26:37 +02:00
Claudio Atzori
b0fed1725e
avoid NPEs
2023-10-19 12:13:45 +02:00
Miriam Baglioni
f1b898c6b4
mergin with branch beta
2023-10-19 09:04:35 +02:00
Claudio Atzori
6dfcd0c9a2
[raw graph] mapping original resource types
2023-10-16 12:57:18 +02:00
Claudio Atzori
39d24d5469
Merge branch 'beta' into resource_types
2023-10-16 11:56:38 +02:00
a5a89a702f
new spark parrameter updated
2023-10-16 11:46:12 +02:00
Miriam Baglioni
159388f9c2
testing and fix some issues
2023-10-16 11:26:07 +02:00
Claudio Atzori
03670bb9ce
[dedup] use common saveParquet and save methods to ensure outputs are compressed
2023-10-16 10:55:47 +02:00
Claudio Atzori
54fbf09ac6
[raw graph] WIP: mapping original resource types
2023-10-16 08:57:47 +02:00
Claudio Atzori
6cf64d5d8b
[SWH] renamed 'Software Heritage Identifier' to 'Software Hash Identifier'
2023-10-13 10:09:26 +02:00
Claudio Atzori
242d647146
cleanup & docs
2023-10-12 12:23:44 +02:00
Claudio Atzori
76447958bb
cleanup & docs
2023-10-12 12:23:20 +02:00
Claudio Atzori
af3ffad6c4
[AMF] docs
2023-10-12 10:07:52 +02:00
Claudio Atzori
dda602fff7
[AMF] docs
2023-10-12 10:05:46 +02:00
Miriam Baglioni
8e9493fad9
mergin with branch beta
2023-10-11 18:18:09 +02:00
Miriam Baglioni
89184d5b4f
used the API instead of the IS for bulktagging and propagation for community through organization. Added a new propagation step for communities through projects. Still using the API and not the IS
2023-10-11 18:17:35 +02:00
Claudio Atzori
554551682d
[raw graph] adopting the new COAR based vocabularies for the resource typing
2023-10-11 16:09:19 +02:00
Claudio Atzori
a460ebe215
[UnresolvedEntities] updated action name
2023-10-10 15:50:11 +02:00
Claudio Atzori
66064e99fe
Merge branch 'beta' into fos
2023-10-10 15:07:21 +02:00
Miriam Baglioni
a431b04814
leftover for the properties and removal of bipfinder
2023-10-10 12:53:57 +02:00
Claudio Atzori
ed9282ef2a
removed module dhp-stats-monitor-update
2023-10-10 09:52:03 +02:00
Miriam Baglioni
110ce4b40f
extend the fos model to include the level4 and the scores for level3 and level4. removed bip indicators from the instance
2023-10-10 09:46:40 +02:00
Claudio Atzori
204404b0e3
Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta
2023-10-10 09:36:13 +02:00
Claudio Atzori
9a98f408b3
code formatting
2023-10-10 09:36:11 +02:00
Claudio Atzori
4e6fccf4f6
Merge pull request 'Beta stats wf updated' ( #332 ) from antonis.lempesis/dnet-hadoop:beta into beta
...
Reviewed-on: #332
2023-10-10 09:35:32 +02:00
Miriam Baglioni
a3d01ccb24
refactoring
2023-10-09 14:52:17 +02:00
Miriam Baglioni
8448b9ebfb
mergin with branch beta
2023-10-09 14:27:23 +02:00
Miriam Baglioni
3d6be20989
changes to use the API instead of the IS the get the information for the communities to be used during bulktagging and context propagation
2023-10-09 14:26:33 +02:00
17586f0ff8
Update step20-createMonitorDB.sql
...
Add result_orcid table to monitor dbs
2023-10-09 14:21:31 +03:00
489a082f04
Update step16-createIndicatorsTables.sql
...
Change scripts for gold, hybrid, bronze indicators
2023-10-09 14:00:50 +03:00
Claudio Atzori
ef833840c3
[Doiboost] removed linkage to SFI unidentified project
2023-10-06 15:48:18 +02:00
Claudio Atzori
84a58802ab
[OC] using the common pid cleaning function
2023-10-06 14:48:05 +02:00
Claudio Atzori
46034630cf
[OC] compress the output actionset
2023-10-06 14:42:02 +02:00
Claudio Atzori
3bc44fbf1d
Merge branch 'beta' into irish_funder
2023-10-06 14:26:41 +02:00
Claudio Atzori
3c23d5f9bc
Merge branch 'beta' into SWH_integration
2023-10-06 14:15:38 +02:00
Claudio Atzori
858931ccb6
[SWH] compress the output actionset
2023-10-06 14:03:33 +02:00
Claudio Atzori
f759b18bca
[SWH] aligned parameter name
2023-10-06 13:43:20 +02:00
Claudio Atzori
eed9fe0902
code formatting
2023-10-06 12:31:17 +02:00
Claudio Atzori
73c49b8d26
Merge branch 'beta' into SWH_integration
2023-10-06 12:21:51 +02:00
42a2dad975
implemented relation to irish funder from a Json list
2023-10-06 11:52:33 +02:00
Miriam Baglioni
dimitrispie
Claudio Atzori
Sandro La Bruzzo
Serafeim Chatzopoulos