Merge pull request 'DOIBoost Mapping: change the creation of the instance in the DOIBoost result' (#155) from doiboost_url into beta
Reviewed-on: #155
This commit is contained in:
commit
8bdca3413f
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@ -70,7 +70,7 @@ case object Crossref2Oaf {
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"reference-book" -> "0002 Book",
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"reference-book" -> "0002 Book",
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"monograph" -> "0002 Book",
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"monograph" -> "0002 Book",
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"journal-article" -> "0001 Article",
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"journal-article" -> "0001 Article",
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"dissertation" -> "0006 Doctoral thesis",
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"dissertation" -> "0044 Thesis",
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"other" -> "0038 Other literature type",
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"other" -> "0038 Other literature type",
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"peer-review" -> "0015 Review",
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"peer-review" -> "0015 Review",
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"proceedings" -> "0004 Conference object",
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"proceedings" -> "0004 Conference object",
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@ -206,11 +206,16 @@ case object Crossref2Oaf {
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else {
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else {
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instance.setDateofacceptance(asField(createdDate.getValue))
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instance.setDateofacceptance(asField(createdDate.getValue))
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}
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}
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val s: String = (json \ "URL").extract[String]
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val s: List[String] = List("https://doi.org/" + doi)
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val links: List[String] = ((for {JString(url) <- json \ "link" \ "URL"} yield url) ::: List(s)).filter(p => p != null).distinct
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// val links: List[String] = ((for {JString(url) <- json \ "link" \ "URL"} yield url) ::: List(s)).filter(p => p != null && p.toLowerCase().contains(doi.toLowerCase())).distinct
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if (links.nonEmpty) {
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// if (links.nonEmpty) {
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instance.setUrl(links.asJava)
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// instance.setUrl(links.asJava)
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}
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// }
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if(s.nonEmpty)
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{
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instance.setUrl(s.asJava)
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}
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result.setInstance(List(instance).asJava)
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result.setInstance(List(instance).asJava)
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//IMPORTANT
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//IMPORTANT
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@ -111,26 +111,9 @@ object SparkProcessMAG {
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.map(item => ConversionUtil.updatePubsWithConferenceInfo(item))
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.map(item => ConversionUtil.updatePubsWithConferenceInfo(item))
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.write
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.write
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.mode(SaveMode.Overwrite)
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.mode(SaveMode.Overwrite)
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.save(s"$workingPath/merge_step_2_conference")
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magPubs= spark.read.load(s"$workingPath/merge_step_2_conference").as[Publication]
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.map(p => (ConversionUtil.extractMagIdentifier(p.getOriginalId.asScala), p)).as[(String, Publication)]
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val paperUrlDataset = spark.read.load(s"$sourcePath/PaperUrls").as[MagPaperUrl].groupBy("PaperId").agg(collect_list(struct("sourceUrl")).as("instances")).as[MagUrl]
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logger.info("Phase 5) enrich publication with URL and Instances")
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magPubs.joinWith(paperUrlDataset, col("_1").equalTo(paperUrlDataset("PaperId")), "left")
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.map { a: ((String, Publication), MagUrl) => ConversionUtil.addInstances((a._1._2, a._2)) }
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.write.mode(SaveMode.Overwrite)
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.save(s"$workingPath/merge_step_3")
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.save(s"$workingPath/merge_step_3")
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// logger.info("Phase 6) Enrich Publication with description")
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// val pa = spark.read.load(s"${parser.get("sourcePath")}/PaperAbstractsInvertedIndex").as[MagPaperAbstract]
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// pa.map(ConversionUtil.transformPaperAbstract).write.mode(SaveMode.Overwrite).save(s"${parser.get("targetPath")}/PaperAbstract")
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val paperAbstract = spark.read.load((s"$workingPath/PaperAbstract")).as[MagPaperAbstract]
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val paperAbstract = spark.read.load((s"$workingPath/PaperAbstract")).as[MagPaperAbstract]
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@ -162,12 +145,14 @@ object SparkProcessMAG {
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.write.mode(SaveMode.Overwrite)
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.write.mode(SaveMode.Overwrite)
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.save(s"$workingPath/mag_publication")
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.save(s"$workingPath/mag_publication")
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spark.read.load(s"$workingPath/mag_publication").as[Publication]
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.filter(p => p.getId == null)
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.groupByKey(p => p.getId)
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.reduceGroups((a:Publication, b:Publication) => ConversionUtil.mergePublication(a,b))
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.map(_._2)
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.write.mode(SaveMode.Overwrite).save(s"$targetPath/magPublication")
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val s:RDD[Publication] = spark.read.load(s"$workingPath/mag_publication").as[Publication]
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.map(p=>Tuple2(p.getId, p)).rdd.reduceByKey((a:Publication, b:Publication) => ConversionUtil.mergePublication(a,b))
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.map(_._2)
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spark.createDataset(s).as[Publication].write.mode(SaveMode.Overwrite).save(s"$targetPath/magPublication")
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}
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}
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}
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}
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@ -612,4 +612,26 @@ class CrossrefMappingTest {
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}
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}
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@Test
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def testMultipleURLs() :Unit = {
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val json = Source.fromInputStream(getClass.getResourceAsStream("multiple_urls.json")).mkString
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assertNotNull(json)
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assertFalse(json.isEmpty);
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val resultList: List[Oaf] = Crossref2Oaf.convert(json)
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assertTrue(resultList.nonEmpty)
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val item : Result = resultList.filter(p => p.isInstanceOf[Result]).head.asInstanceOf[Result]
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assertEquals(1, item.getInstance().size())
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assertEquals(1, item.getInstance().get(0).getUrl().size())
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assertEquals("https://doi.org/10.1016/j.jas.2019.105013", item.getInstance().get(0).getUrl().get(0))
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//println(mapper.writeValueAsString(item))
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}
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}
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}
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@ -0,0 +1,614 @@
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{
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"indexed": {
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"date-parts": [
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[
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2021,
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10,
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31
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]
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],
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"date-time": "2021-10-31T15:48:01Z",
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"timestamp": 1635695281393
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},
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"reference-count": 39,
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"publisher": "Elsevier BV",
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"license": [
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{
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"start": {
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"date-parts": [
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[
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2019,
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12,
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1
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]
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],
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"date-time": "2019-12-01T00:00:00Z",
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"timestamp": 1575158400000
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},
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"content-version": "tdm",
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"delay-in-days": 0,
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"URL": "https://www.elsevier.com/tdm/userlicense/1.0/"
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},
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{
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"start": {
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"date-parts": [
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[
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2019,
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9,
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13
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]
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],
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"date-time": "2019-09-13T00:00:00Z",
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"timestamp": 1568332800000
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},
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"content-version": "vor",
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"delay-in-days": 0,
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"URL": "http://creativecommons.org/licenses/by/4.0/"
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}
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],
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"funder": [
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{
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"DOI": "10.13039/100001182",
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"name": "INSTAP",
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"doi-asserted-by": "publisher"
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},
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{
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"DOI": "10.13039/100014440",
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"name": "Ministry of Science, Innovation and Universities",
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"doi-asserted-by": "publisher",
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"award": [
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"RYC-2016-19637"
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]
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},
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{
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"DOI": "10.13039/100010661",
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"name": "European Union’s Horizon 2020",
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"doi-asserted-by": "publisher",
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"award": [
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"746446"
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]
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}
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],
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"content-domain": {
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"domain": [
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"elsevier.com",
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"sciencedirect.com"
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],
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"crossmark-restriction": true
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},
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"short-container-title": [
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"Journal of Archaeological Science"
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],
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"published-print": {
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"date-parts": [
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[
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2019,
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12
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]
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]
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},
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"DOI": "10.1016/j.jas.2019.105013",
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"type": "journal-article",
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"created": {
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"date-parts": [
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[
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2019,
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9,
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||||||
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25
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]
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],
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"date-time": "2019-09-25T20:05:08Z",
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"timestamp": 1569441908000
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},
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"page": "105013",
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"update-policy": "http://dx.doi.org/10.1016/elsevier_cm_policy",
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"source": "Crossref",
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"is-referenced-by-count": 21,
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"title": [
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"A brave new world for archaeological survey: Automated machine learning-based potsherd detection using high-resolution drone imagery"
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],
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"prefix": "10.1016",
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"volume": "112",
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"author": [
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{
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||||||
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"given": "H.A.",
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||||||
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"family": "Orengo",
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"sequence": "first",
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||||||
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"affiliation": [
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||||||
|
|
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|
]
|
||||||
|
},
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{
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"given": "A.",
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"family": "Garcia-Molsosa",
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"sequence": "additional",
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||||||
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"affiliation": [
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]
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}
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],
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"member": "78",
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"reference": [
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{
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||||||
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"key": "10.1016/j.jas.2019.105013_bib1",
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"doi-asserted-by": "crossref",
|
||||||
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"first-page": "85",
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||||||
|
"DOI": "10.1080/17538947.2016.1250829",
|
||||||
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"article-title": "Remote sensing heritage in a petabyte-scale: satellite data and heritage Earth Engine© applications",
|
||||||
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"volume": "10",
|
||||||
|
"author": "Agapiou",
|
||||||
|
"year": "2017",
|
||||||
|
"journal-title": "Int. J. Digit. Earth"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib2",
|
||||||
|
"series-title": "Extracting Meaning from Ploughsoil Assemblages",
|
||||||
|
"first-page": "1",
|
||||||
|
"article-title": "Extracting meaning from ploughsoil assemblages: assessments of the past, strategies for the future",
|
||||||
|
"author": "Alcock",
|
||||||
|
"year": "2000"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib3",
|
||||||
|
"series-title": "Side-by-Side Survey. Comparative Regional Studies in the Mediterranean World",
|
||||||
|
"first-page": "1",
|
||||||
|
"article-title": "Introduction",
|
||||||
|
"author": "Alcock",
|
||||||
|
"year": "2004"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib4",
|
||||||
|
"doi-asserted-by": "crossref",
|
||||||
|
"first-page": "93",
|
||||||
|
"DOI": "10.1111/j.1538-4632.1995.tb00338.x",
|
||||||
|
"article-title": "Local indicators of spatial association—LISA",
|
||||||
|
"volume": "27",
|
||||||
|
"author": "Anselin",
|
||||||
|
"year": "1995",
|
||||||
|
"journal-title": "Geogr. Anal."
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib5",
|
||||||
|
"series-title": "Archaeological Survey",
|
||||||
|
"author": "Banning",
|
||||||
|
"year": "2002"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"issue": "1/2",
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib6",
|
||||||
|
"doi-asserted-by": "crossref",
|
||||||
|
"first-page": "123",
|
||||||
|
"DOI": "10.2307/3181488",
|
||||||
|
"article-title": "GIS, archaeological survey and landscape archaeology on the island of Kythera, Greece",
|
||||||
|
"volume": "29",
|
||||||
|
"author": "Bevan",
|
||||||
|
"year": "2004",
|
||||||
|
"journal-title": "J. Field Archaeol."
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"issue": "1",
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib8",
|
||||||
|
"doi-asserted-by": "crossref",
|
||||||
|
"first-page": "5",
|
||||||
|
"DOI": "10.1023/A:1010933404324",
|
||||||
|
"article-title": "Random forests",
|
||||||
|
"volume": "45",
|
||||||
|
"author": "Breiman",
|
||||||
|
"year": "2001",
|
||||||
|
"journal-title": "Mach. Learn."
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib9",
|
||||||
|
"series-title": "Sampling in Contemporary British Archaeology",
|
||||||
|
"author": "Cherry",
|
||||||
|
"year": "1978"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"issue": "3",
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib10",
|
||||||
|
"doi-asserted-by": "crossref",
|
||||||
|
"first-page": "273",
|
||||||
|
"DOI": "10.1016/0734-189X(84)90197-X",
|
||||||
|
"article-title": "Segmentation of a high-resolution urban scene using texture operators",
|
||||||
|
"volume": "25",
|
||||||
|
"author": "Conners",
|
||||||
|
"year": "1984",
|
||||||
|
"journal-title": "Comput. Vis. Graph Image Process"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib11",
|
||||||
|
"first-page": "31",
|
||||||
|
"article-title": "Old land surfaces and modern ploughsoil: implications of recent work at Maxey, Cambridgeshire",
|
||||||
|
"volume": "2",
|
||||||
|
"author": "Crowther",
|
||||||
|
"year": "1983",
|
||||||
|
"journal-title": "Scott. Archaeol. Rev."
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib12",
|
||||||
|
"series-title": "Settlement Pattern Studies in the Americas: Fifty Years since Virú",
|
||||||
|
"first-page": "203",
|
||||||
|
"article-title": "Conclusions: the settlement pattern concept from an Americanist perspective",
|
||||||
|
"author": "Fish",
|
||||||
|
"year": "1999"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib13",
|
||||||
|
"doi-asserted-by": "crossref",
|
||||||
|
"first-page": "21",
|
||||||
|
"DOI": "10.3390/geosciences9010021",
|
||||||
|
"article-title": "Remote sensing and historical morphodynamics of alluvial plains. The 1909 indus flood and the city of Dera Gazhi Khan (province of Punjab, Pakistan)",
|
||||||
|
"volume": "9",
|
||||||
|
"author": "Garcia",
|
||||||
|
"year": "2019",
|
||||||
|
"journal-title": "Geosciences"
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib14",
|
||||||
|
"unstructured": "Georgiadis, M.; Garcia-Molsosa, A.; Orengo, H.A.; Kefalidou, E. and Kallintzi, K. In Preparation. APAX Project 2015-2018: A Preliminary Report. (Hesperia)."
|
||||||
|
},
|
||||||
|
{
|
||||||
|
"key": "10.1016/j.jas.2019.105013_bib15",
|
||||||
|
"series-title": "Geographical Information Systems and Landscape Archaeology",
|
||||||
|
"first-page": "35",
|
||||||
|
"article-title": "Regional survey and GIS: the boeotia project",
|
||||||
|
"author": "Gillings",
|
||||||
|
"year": "1999"
|
||||||
|
},
|
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Reference in New Issue