forked from D-Net/openaire-graph-docs
6.7 KiB
6.7 KiB
PubMed
This section describes the mapping implemented for MEDLINE/PubMed.
Input
The native data is collected from the ftp baseline site. It contains XML records compliant with the schema available at https://www.nlm.nih.gov/bsd/licensee/elements_descriptions.html.
Mapping
The table below describes the mapping from the XML baseline records to the OpenAIRE Graph dump format.
| OpenAIRE Result field path | PubMed record field xpath | Notes |
|---|---|---|
| Publication Mapping | ||
id |
?? | ?? |
pid |
//PMID |
classid = classname = pmid |
publicationdate |
//PubmedPubDate |
apply the function GraphCleaningFunctions.cleanDate before assign it |
maintitle |
//Title |
|
description |
//AbstractText |
|
language |
//Language |
cleaning vocabulary -> dnet:languages |
subjects |
//DescriptorName |
classId, className = keyword |
| Author Mapping | ||
author.surname |
//Author/LastName |
|
author.name |
//Author/ForeName |
|
author.fullname |
//Author/FullName |
Concatenation of forename + lastName if exist |
author.rank |
FOR ALL AUTHORS | sequential number starting from 1 |
| Journal Mapping | ||
container.conferencedate |
//Journal/PubDate |
map the date of the Journal |
container.name |
//Journal/Title |
name of the journal |
container.vol |
//Journal/Volume |
journal volume |
container.issPrinted |
//Journal/ISSN |
?? |
container.iss |
//Journal/Issue |
The journal issue |
| Instance Mapping | ||
instance.type |
//PublicationType |
if the article contains the typology Journal Article then we apply this type else We have to find a terms that match the vocabulary otherwise we discard it |
instance.pid |
//PMID |
map the pmid in the pid in the instance |
instance.url |
//PMID |
creates the URL by prepending https://pubmed.ncbi.nlm.nih.gov/ to the PMId |
instance.alternateIdentifier |
//ArticleId[./@IdType="doi"] |
|
instance.publicationdate |
//PubmedPubDate |
| OpenAIRE Relation field path | PubMed record field xpath | Notes |
|---|---|---|
#TODO
Missing item mapped