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EMBL-EBIs Protein Data Bank in Europe
This section describes the mapping implemented for EMBL-EBIs Protein Data Bank in Europe.
The Europe PMC RESTful Web Service gives the datalinks APIto retrieve data-literature links in Scholix format .
how data is collected
Starting from the Pubmed collection, we exploit this API to get all the related bioentities related to a Publication with a specific PubMed identifier.
Following this request: https://www.ebi.ac.uk/europepmc/webservices/rest/MED/$PMID/datalinks?format=json we store for each pubmedID the links related.
Mapping
The table below describes the mapping from the EBI links records to the OpenAIRE Graph dump format.
| OpenAIRE Result field path | PubMed record field xpath | Notes |
|---|