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Added mapping of UNiprot and updated pid types

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Sandro La Bruzzo 2023-03-09 14:21:23 +01:00
parent 16c87331e4
commit da45601f2c
2 changed files with 10 additions and 1 deletions
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9
docs/data-model/pids-and-identifiers.md
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@ -18,6 +18,10 @@ Such a policy defines a list of data sources that are considered authoritative f
| doi | [Crossref](https://www.crossref.org), [Datacite](https://datacite.org) |
| pmc, pmid | [Europe PubMed Central](https://europepmc.org/), [PubMed Central](https://www.ncbi.nlm.nih.gov/pmc) |
| arXiv | [arXiv.org e-Print Archive](https://arxiv.org/) |
| uniprot | [Protein Data Bank](http://www.pdb.org/) |
| ena | [Protein Data Bank](http://www.pdb.org/) |
| pdb | [Protein Data Bank](http://www.pdb.org/) |
There is an exception though: Handle(s) are minted by several repositories; as listing them all would not be a viable option, to avoid losing them as PIDs, Handles bypass the PID authority filtering rule.
In all other cases, PIDs are be included in the graph as alternate Identifiers.
@ -63,12 +67,15 @@ When the record is collected from a source which is not authoritative for any ty
Currently, the following data sources are used as "PID authorities":
| PID Type | Prefix (12 chars) | Authority |
|-----------|------------------------|-----------------------------------------|
|-----------|------------------------|-------------------------------------------|
| doi | `doi_________` | Crossref, Datacite, Zenodo |
| pmc | `pmc_________` | Europe PubMed Central, PubMed Central |
| pmid | `pmid________` | Europe PubMed Central, PubMed Central |
| arXiv | `arXiv_______` | arXiv.org e-Print Archive |
| handle | `handle______` | any repository |
| ena | `ena_________` | EMBL-EBI |
| pdb | `pdb_________` | EMBL-EBI |
| uniprot | `uniprot_____` | EMBL-EBI |
OpenAIRE also perform duplicate identification (see the [dedicated section for details](/data-provision/deduplication)).
All duplicates are **merged** together in a **representative record** which must be assigned a dedicated OpenAIRE identifier (i.e. it cannot have the identifier of one of the aggregated record).

2
sidebars.js
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@ -88,6 +88,8 @@ const sidebars = {
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/pubmed' },
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/datacite' },
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/ebi', label: 'EMBL-EBI' },
{ type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/uniprot', label: 'UniProtKB/Swiss-Prot' },
]
}
]