From da45601f2ce7f9ce7915acdc6936adeaf2f05c7d Mon Sep 17 00:00:00 2001 From: Sandro La Bruzzo Date: Thu, 9 Mar 2023 14:21:23 +0100 Subject: [PATCH] Added mapping of UNiprot and updated pid types --- docs/data-model/pids-and-identifiers.md | 9 ++++++++- sidebars.js | 2 ++ 2 files changed, 10 insertions(+), 1 deletion(-) diff --git a/docs/data-model/pids-and-identifiers.md b/docs/data-model/pids-and-identifiers.md index be6731b..de31912 100644 --- a/docs/data-model/pids-and-identifiers.md +++ b/docs/data-model/pids-and-identifiers.md @@ -18,6 +18,10 @@ Such a policy defines a list of data sources that are considered authoritative f | doi | [Crossref](https://www.crossref.org), [Datacite](https://datacite.org) | | pmc, pmid | [Europe PubMed Central](https://europepmc.org/), [PubMed Central](https://www.ncbi.nlm.nih.gov/pmc) | | arXiv | [arXiv.org e-Print Archive](https://arxiv.org/) | +| uniprot | [Protein Data Bank](http://www.pdb.org/) | +| ena | [Protein Data Bank](http://www.pdb.org/) | +| pdb | [Protein Data Bank](http://www.pdb.org/) | + There is an exception though: Handle(s) are minted by several repositories; as listing them all would not be a viable option, to avoid losing them as PIDs, Handles bypass the PID authority filtering rule. In all other cases, PIDs are be included in the graph as alternate Identifiers. @@ -63,12 +67,15 @@ When the record is collected from a source which is not authoritative for any ty Currently, the following data sources are used as "PID authorities": | PID Type | Prefix (12 chars) | Authority | -|-----------|------------------------|-----------------------------------------| +|-----------|------------------------|-------------------------------------------| | doi | `doi_________` | Crossref, Datacite, Zenodo | | pmc | `pmc_________` | Europe PubMed Central, PubMed Central | | pmid | `pmid________` | Europe PubMed Central, PubMed Central | | arXiv | `arXiv_______` | arXiv.org e-Print Archive | | handle | `handle______` | any repository | +| ena | `ena_________` | EMBL-EBI | +| pdb | `pdb_________` | EMBL-EBI | +| uniprot | `uniprot_____` | EMBL-EBI | OpenAIRE also perform duplicate identification (see the [dedicated section for details](/data-provision/deduplication)). All duplicates are **merged** together in a **representative record** which must be assigned a dedicated OpenAIRE identifier (i.e. it cannot have the identifier of one of the aggregated record). diff --git a/sidebars.js b/sidebars.js index 2ae65e4..0f933aa 100644 --- a/sidebars.js +++ b/sidebars.js @@ -88,6 +88,8 @@ const sidebars = { { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/pubmed' }, { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/datacite' }, { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/ebi', label: 'EMBL-EBI' }, + { type: 'doc', id: 'data-provision/aggregation/non-compatible-sources/uniprot', label: 'UniProtKB/Swiss-Prot' }, + ] } ]