71 lines
5.6 KiB
XML
71 lines
5.6 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100013727</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">ATCC Genome Portal</r3d:repositoryName>
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<r3d:repositoryURL>https://genomes.atcc.org</r3d:repositoryURL>
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<r3d:repositoryIdentifier>RRID:SCR_021330</r3d:repositoryIdentifier>
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<r3d:description language="eng">Database and knowledgebase of authenticated microbial genomics data with full data provenance to physical materials held within American Type Culture Collection's (ATCC) biorepository and culture collections. Data includes whole genome sequencing data for bacterial, viral and fungal strains at ATCC, their genome assemblies, metadata, drug susceptibility data, and more. All data is freely available for non-commercial research use only (RUO) applications via the web portal interface or via a REST-API. The goal is to provide the research community with provenance information and authentication between the biological source materials and reference genome assemblies derived from them.</r3d:description>
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<r3d:repositoryContact>https://www.atcc.org/en/Support/Contact_Us.aspx</r3d:repositoryContact>
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<r3d:type>institutional</r3d:type>
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<r3d:size updated=""></r3d:size>
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<r3d:startDate>2019</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL></r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:providerType>dataProvider</r3d:providerType>
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<r3d:keyword>genomics</r3d:keyword>
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<r3d:keyword>reference genome</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">American Type Culture Collection</r3d:institutionName>
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<r3d:institutionCountry>USA</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://atcc.org</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:03thhhv76</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate>2019</r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:policy>
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<r3d:policyName>The ATCC Genome Portal Documentation</r3d:policyName>
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<r3d:policyURL>https://docs.onecodex.com/en/collections/2314023-the-atcc-genome-portal</r3d:policyURL>
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</r3d:policy>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>restricted</r3d:dataAccessType>
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<r3d:dataAccessRestriction>feeRequired</r3d:dataAccessRestriction>
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<r3d:dataAccessRestriction>registration</r3d:dataAccessRestriction>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>other</r3d:dataLicenseName>
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<r3d:dataLicenseURL>https://www.atcc.org/policies/product-use-policies/data-use-agreement</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>institutional membership</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>other</r3d:softwareName>
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</r3d:software>
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<r3d:versioning></r3d:versioning>
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<r3d:api apiType="REST">https://app.swaggerhub.com/apis/bcamarda/genome-portal_api/v1#/</r3d:api>
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<r3d:citationGuidelineURL>https://www.atcc.org/policies/product-use-policies/data-use-agreement</r3d:citationGuidelineURL>
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<r3d:enhancedPublication>yes</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks></r3d:remarks>
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<r3d:entryDate>2022-01-29</r3d:entryDate>
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<r3d:lastUpdate>2022-02-02</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |