140 lines
12 KiB
XML
140 lines
12 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
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<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
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<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
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<r3d:repository>
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<r3d:re3data.orgIdentifier>r3d100012341</r3d:re3data.orgIdentifier>
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<r3d:repositoryName language="eng">Codex</r3d:repositoryName>
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<r3d:additionalName language="eng">A comprehensive and functional compendium of Next Generation Sequencing experiments.</r3d:additionalName>
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<r3d:repositoryURL>http://codex.stemcells.cam.ac.uk/</r3d:repositoryURL>
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<r3d:repositoryIdentifier>OMICS_05871</r3d:repositoryIdentifier>
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<r3d:description language="eng">CODEX is a database of NGS mouse and human experiments. Although, the main focus of CODEX is Haematopoiesis and Embryonic systems, the database includes a large variety of cell types. In addition to the publically available data, CODEX also includes a private site hosting non-published data. CODEX provides access to processed and curated NGS experiments. To use CODEX: (i) select a specialized repository (HAEMCODE or ESCODE) or choose the whole compendium (CODEX), then (ii) filter by organism and (iii) choose how to explore the database.</r3d:description>
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<r3d:type>disciplinary</r3d:type>
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<r3d:size updated="2022-06-01">1.734 Public experiments; 145 Private experiments ; 292 Unique factors; 147 Unique cell types</r3d:size>
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<r3d:startDate>2014</r3d:startDate>
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<r3d:endDate></r3d:endDate>
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<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
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<r3d:subject subjectScheme="DFG">1 Humanities and Social Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
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<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
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<r3d:subject subjectScheme="DFG">20103 Cell Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">203 Zoology</r3d:subject>
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<r3d:subject subjectScheme="DFG">20306 Animal Genetics, Cell and Developmental Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
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<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
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<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
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<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
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<r3d:missionStatementURL>http://codex.stemcells.cam.ac.uk/about.php</r3d:missionStatementURL>
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<r3d:contentType contentTypeScheme="parse">Raw data</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
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<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
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<r3d:providerType>serviceProvider</r3d:providerType>
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<r3d:keyword>Chip-Seq</r3d:keyword>
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<r3d:keyword>DNase-Seq</r3d:keyword>
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<r3d:keyword>RNA-Seq</r3d:keyword>
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<r3d:keyword>bioinformatics</r3d:keyword>
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<r3d:keyword>embryonic systems</r3d:keyword>
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<r3d:keyword>haematopoiesis</r3d:keyword>
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<r3d:keyword>next generation sequencing NGS</r3d:keyword>
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<r3d:keyword>stem cell</r3d:keyword>
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<r3d:institution>
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<r3d:institutionName language="eng">Blood Cancer UK</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">formerly: Leukaemia & Lymphoma Research</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">formerly: bloodwise</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://bloodcancer.org.uk/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://bloodcancer.org.uk/about-us/ways-contact-blood-cancer-uk/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Cambridge Institute for Medical Research, Cambridge Stem Cell Institute</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">Gottgens lab</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">HSCL - Bertie Gottgens</r3d:institutionAdditionalName>
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<r3d:institutionAdditionalName language="eng">Haematopoietic Stem Cell Lab - Bertie Gottgens</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>general</r3d:responsibilityType>
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<r3d:responsibilityType>technical</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.stemcells.cam.ac.uk/people/pi/gottgens</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Cancer Research UK</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.cancerresearchuk.org/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:054225q67</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:SCR_004041</r3d:institutionIdentifier>
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<r3d:institutionIdentifier>RRID:nlx_143542</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.cancerresearchuk.org/about-us/contact-us</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">UK Research and Innovation, Biotechnology and Biological Sciences Research Council</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">BBSRC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.ukri.org/councils/bbsrc/</r3d:institutionURL>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.ukri.org/about-us/bbsrc/contact-us/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">UK Research and Innovation, Medical Research Council</r3d:institutionName>
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<r3d:institutionAdditionalName language="eng">MRC</r3d:institutionAdditionalName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.ukri.org/councils/mrc/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:03x94j517</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>https://www.ukri.org/about-us/mrc/contact-us/</r3d:institutionContact>
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</r3d:institution>
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<r3d:institution>
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<r3d:institutionName language="eng">Wellcome Trust, Medical Research Council, Cambridge Stem Cell Institute</r3d:institutionName>
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<r3d:institutionCountry>GBR</r3d:institutionCountry>
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<r3d:responsibilityType>funding</r3d:responsibilityType>
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<r3d:institutionType>non-profit</r3d:institutionType>
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<r3d:institutionURL>https://www.stemcells.cam.ac.uk/</r3d:institutionURL>
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<r3d:institutionIdentifier>ROR:05nz0zp31</r3d:institutionIdentifier>
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<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
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<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
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<r3d:institutionContact>sci-coordinator@stemcells.cam.ac.uk</r3d:institutionContact>
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</r3d:institution>
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<r3d:databaseAccess>
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<r3d:databaseAccessType>open</r3d:databaseAccessType>
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</r3d:databaseAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>closed</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataAccess>
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<r3d:dataAccessType>open</r3d:dataAccessType>
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</r3d:dataAccess>
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<r3d:dataLicense>
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<r3d:dataLicenseName>Public Domain</r3d:dataLicenseName>
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<r3d:dataLicenseURL>http://codex.stemcells.cam.ac.uk/doc_pipeline.php</r3d:dataLicenseURL>
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</r3d:dataLicense>
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<r3d:dataUpload>
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<r3d:dataUploadType>restricted</r3d:dataUploadType>
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<r3d:dataUploadRestriction>other</r3d:dataUploadRestriction>
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</r3d:dataUpload>
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<r3d:software>
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<r3d:softwareName>unknown</r3d:softwareName>
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</r3d:software>
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<r3d:versioning></r3d:versioning>
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<r3d:citationGuidelineURL>http://codex.stemcells.cam.ac.uk/about.php</r3d:citationGuidelineURL>
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<r3d:aidSystem>none</r3d:aidSystem>
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<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
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<r3d:qualityManagement>yes</r3d:qualityManagement>
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<r3d:remarks></r3d:remarks>
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<r3d:entryDate>2017-03-31</r3d:entryDate>
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<r3d:lastUpdate>2022-06-01</r3d:lastUpdate>
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</r3d:repository>
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</r3d:re3data> |