r3d100012341 Codex A comprehensive and functional compendium of Next Generation Sequencing experiments. http://codex.stemcells.cam.ac.uk/ OMICS_05871 CODEX is a database of NGS mouse and human experiments. Although, the main focus of CODEX is Haematopoiesis and Embryonic systems, the database includes a large variety of cell types. In addition to the publically available data, CODEX also includes a private site hosting non-published data. CODEX provides access to processed and curated NGS experiments. To use CODEX: (i) select a specialized repository (HAEMCODE or ESCODE) or choose the whole compendium (CODEX), then (ii) filter by organism and (iii) choose how to explore the database. disciplinary 1.734 Public experiments; 145 Private experiments ; 292 Unique factors; 147 Unique cell types 2014 eng 1 Humanities and Social Sciences 2 Life Sciences 201 Basic Biological and Medical Research 20103 Cell Biology 203 Zoology 20306 Animal Genetics, Cell and Developmental Biology 205 Medicine 20503 Human Genetics 21 Biology 22 Medicine http://codex.stemcells.cam.ac.uk/about.php Raw data Scientific and statistical data formats Software applications serviceProvider Chip-Seq DNase-Seq RNA-Seq bioinformatics embryonic systems haematopoiesis next generation sequencing NGS stem cell Blood Cancer UK formerly: Leukaemia & Lymphoma Research formerly: bloodwise GBR funding non-profit https://bloodcancer.org.uk/ https://bloodcancer.org.uk/about-us/ways-contact-blood-cancer-uk/ Cambridge Institute for Medical Research, Cambridge Stem Cell Institute Gottgens lab HSCL - Bertie Gottgens Haematopoietic Stem Cell Lab - Bertie Gottgens GBR general technical non-profit https://www.stemcells.cam.ac.uk/people/pi/gottgens Cancer Research UK GBR funding non-profit https://www.cancerresearchuk.org/ ROR:054225q67 RRID:SCR_004041 RRID:nlx_143542 https://www.cancerresearchuk.org/about-us/contact-us UK Research and Innovation, Biotechnology and Biological Sciences Research Council BBSRC GBR funding non-profit https://www.ukri.org/councils/bbsrc/ https://www.ukri.org/about-us/bbsrc/contact-us/ UK Research and Innovation, Medical Research Council MRC GBR funding non-profit https://www.ukri.org/councils/mrc/ ROR:03x94j517 https://www.ukri.org/about-us/mrc/contact-us/ Wellcome Trust, Medical Research Council, Cambridge Stem Cell Institute GBR funding non-profit https://www.stemcells.cam.ac.uk/ ROR:05nz0zp31 sci-coordinator@stemcells.cam.ac.uk open closed open Public Domain http://codex.stemcells.cam.ac.uk/doc_pipeline.php restricted other unknown http://codex.stemcells.cam.ac.uk/about.php none unknown yes 2017-03-31 2022-06-01