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RegistriesOverlap/data/re3dataRecords/r3d100012074.xml

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<?xml version="1.0" encoding="utf-8"?>
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
<r3d:repository>
<r3d:re3data.orgIdentifier>r3d100012074</r3d:re3data.orgIdentifier>
<r3d:repositoryName language="eng">BindingDB</r3d:repositoryName>
<r3d:additionalName language="eng">BDB</r3d:additionalName>
<r3d:additionalName language="eng">The Binding Database</r3d:additionalName>
<r3d:repositoryURL>http://bindingdb.org/bind/index.jsp</r3d:repositoryURL>
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.3b36hk</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:SCR_000390</r3d:repositoryIdentifier>
<r3d:repositoryIdentifier>RRID:nif-0000-02603</r3d:repositoryIdentifier>
<r3d:description language="eng">BindingDB is a public, web-accessible knowledgebase of measured binding affinities, focusing chiefly on the interactions of proteins considered to be candidate drug-targets with ligands that are small, drug-like molecules. BindingDB supports medicinal chemistry and drug discovery via literature awareness and development of structure-activity relations (SAR and QSAR); validation of computational chemistry and molecular modeling approaches such as docking, scoring and free energy methods; chemical biology and chemical genomics; and basic studies of the physical chemistry of molecular recognition. BindingDB also includes a small collection of host-guest binding data of interest to chemists studying supramolecular systems.
The data collection derives from a variety of measurement techniques, including enzyme inhibition and kinetics, isothermal titration calorimetry, NMR, and radioligand and competition assays. BindingDB includes data extracted from the literature and from US Patents by the BindingDB project, selected PubChem confirmatory BioAssays, and ChEMBL entries for which a well defined protein target (&quot;TARGET_TYPE=&#039;PROTEIN&#039;&quot;) is provided.</r3d:description>
<r3d:repositoryContact>http://bindingdb.org/bind/sendmail.jsp</r3d:repositoryContact>
<r3d:repositoryContact>mgilson@health.ucsd.edu</r3d:repositoryContact>
<r3d:type>disciplinary</r3d:type>
<r3d:size updated="2020-12-15">2.100.000 binding data, 920.000 compounds, 8.200 proteins</r3d:size>
<r3d:startDate>2015</r3d:startDate>
<r3d:endDate></r3d:endDate>
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
<r3d:subject subjectScheme="DFG">20508 Pharmacy</r3d:subject>
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
<r3d:subject subjectScheme="DFG">3 Natural Sciences</r3d:subject>
<r3d:subject subjectScheme="DFG">301 Molecular Chemistry</r3d:subject>
<r3d:subject subjectScheme="DFG">303 Physical and Theoretical Chemistry</r3d:subject>
<r3d:subject subjectScheme="DFG">30301 Physical Chemistry of Molecules, Interfaces and Liquids - Spectroscopy, Kinetics</r3d:subject>
<r3d:subject subjectScheme="DFG">31 Chemistry</r3d:subject>
<r3d:missionStatementURL></r3d:missionStatementURL>
<r3d:contentType contentTypeScheme="parse">Archived data</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Standard office documents</r3d:contentType>
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
<r3d:providerType>dataProvider</r3d:providerType>
<r3d:keyword>binding affinity</r3d:keyword>
<r3d:keyword>chemical genomics</r3d:keyword>
<r3d:keyword>drug</r3d:keyword>
<r3d:keyword>drug discovery</r3d:keyword>
<r3d:keyword>drug target</r3d:keyword>
<r3d:keyword>interaction</r3d:keyword>
<r3d:keyword>medicinal chemistry</r3d:keyword>
<r3d:keyword>protein</r3d:keyword>
<r3d:keyword>protein interaction</r3d:keyword>
<r3d:keyword>small molecule</r3d:keyword>
<r3d:keyword>small molecule-protein interaction</r3d:keyword>
<r3d:institution>
<r3d:institutionName language="eng">National Institute of Standards and Technology</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">NIST</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.nist.gov/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:05xpvk416</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">National Institutes of Health</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">NIH</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://www.nih.gov/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:01cwqze88</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">National Science Foundation</r3d:institutionName>
<r3d:institutionAdditionalName language="eng">NSF</r3d:institutionAdditionalName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>funding</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://nsf.gov/</r3d:institutionURL>
<r3d:institutionIdentifier>ROR:021nxhr62</r3d:institutionIdentifier>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
</r3d:institution>
<r3d:institution>
<r3d:institutionName language="eng">University of California at San Diego, Skaggs School of Pharmacy and Pharmaceutical Sciences</r3d:institutionName>
<r3d:institutionCountry>USA</r3d:institutionCountry>
<r3d:responsibilityType>general</r3d:responsibilityType>
<r3d:institutionType>non-profit</r3d:institutionType>
<r3d:institutionURL>https://pharmacy.ucsd.edu/</r3d:institutionURL>
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
<r3d:institutionContact>https://gilson.cloud.ucsd.edu/</r3d:institutionContact>
<r3d:institutionContact>mgilson@ucsd.edu</r3d:institutionContact>
</r3d:institution>
<r3d:policy>
<r3d:policyName>How to use BindingDB</r3d:policyName>
<r3d:policyURL>http://bindingdb.org/bind/FAQ2.jsp</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>Introduction to BindingDB</r3d:policyName>
<r3d:policyURL>http://bindingdb.org/bind/BindingDB-Intro2a.pdf</r3d:policyURL>
</r3d:policy>
<r3d:policy>
<r3d:policyName>Reactome Users guide</r3d:policyName>
<r3d:policyURL>https://reactome.org/userguide/Usersguide.html</r3d:policyURL>
</r3d:policy>
<r3d:databaseAccess>
<r3d:databaseAccessType>open</r3d:databaseAccessType>
</r3d:databaseAccess>
<r3d:dataAccess>
<r3d:dataAccessType>embargoed</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataAccess>
<r3d:dataAccessType>open</r3d:dataAccessType>
</r3d:dataAccess>
<r3d:dataLicense>
<r3d:dataLicenseName>CC</r3d:dataLicenseName>
<r3d:dataLicenseURL>http://creativecommons.org/licenses/by-sa/3.0/</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataLicense>
<r3d:dataLicenseName>CC</r3d:dataLicenseName>
<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/3.0/us/</r3d:dataLicenseURL>
</r3d:dataLicense>
<r3d:dataUpload>
<r3d:dataUploadType>open</r3d:dataUploadType>
</r3d:dataUpload>
<r3d:dataUploadLicense>
<r3d:dataUploadLicenseName>Data Deposition</r3d:dataUploadLicenseName>
<r3d:dataUploadLicenseURL>https://www.bindingdb.org/bind/contributedata.jsp</r3d:dataUploadLicenseURL>
</r3d:dataUploadLicense>
<r3d:software>
<r3d:softwareName>other</r3d:softwareName>
</r3d:software>
<r3d:versioning>yes</r3d:versioning>
<r3d:api apiType="REST">https://www.bindingdb.org/bind/BindingDBRESTfulAPI.jsp</r3d:api>
<r3d:pidSystem>DOI</r3d:pidSystem>
<r3d:citationGuidelineURL></r3d:citationGuidelineURL>
<r3d:enhancedPublication>yes</r3d:enhancedPublication>
<r3d:qualityManagement>yes</r3d:qualityManagement>
<r3d:remarks>is covered by Elsevier.</r3d:remarks>
<r3d:entryDate>2016-07-25</r3d:entryDate>
<r3d:lastUpdate>2021-09-02</r3d:lastUpdate>
</r3d:repository>
</r3d:re3data>
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