179 lines
15 KiB
XML
179 lines
15 KiB
XML
<?xml version="1.0" encoding="utf-8"?>
|
|
<!--re3data.org Schema for the Description of Research Data Repositories. Version 2.2, December 2014. doi:10.2312/re3.006-->
|
|
<r3d:re3data xmlns:r3d="http://www.re3data.org/schema/2-2" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.re3data.org/schema/2-2 http://schema.re3data.org/2-2/re3dataV2-2.xsd">
|
|
<r3d:repository>
|
|
<r3d:re3data.orgIdentifier>r3d100010676</r3d:re3data.orgIdentifier>
|
|
<r3d:repositoryName language="eng">InnateDB</r3d:repositoryName>
|
|
<r3d:additionalName language="eng">A Knowlede Resource for Innate Immunity Interactions & Pathways</r3d:additionalName>
|
|
<r3d:repositoryURL>https://www.innatedb.com/</r3d:repositoryURL>
|
|
<r3d:repositoryIdentifier>FAIRsharing_doi:10.25504/FAIRsharing.rb2drw</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:SCR_006714</r3d:repositoryIdentifier>
|
|
<r3d:repositoryIdentifier>RRID:nif-0000-20808</r3d:repositoryIdentifier>
|
|
<r3d:description language="eng">InnateDB is a publicly available database of the genes, proteins, experimentally-verified interactions and signaling pathways involved in the innate immune response of humans, mice and bovines to microbial infection. The database captures an improved coverage of the innate immunity interactome by integrating known interactions and pathways from major public databases together with manually-curated data into a centralised resource. The database can be mined as a knowledgebase or used with our integrated bioinformatics and visualization tools for the systems level analysis of the innate immune response.</r3d:description>
|
|
<r3d:repositoryContact>innatedb-mail@sfu.ca</r3d:repositoryContact>
|
|
<r3d:type>disciplinary</r3d:type>
|
|
<r3d:size updated="2019-02-12">27.172 curated interactions; 367.527 total inerations</r3d:size>
|
|
<r3d:startDate></r3d:startDate>
|
|
<r3d:endDate></r3d:endDate>
|
|
<r3d:repositoryLanguage>eng</r3d:repositoryLanguage>
|
|
<r3d:subject subjectScheme="DFG">2 Life Sciences</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">201 Basic Biological and Medical Research</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20105 General Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20107 Bioinformatics and Theoretical Biology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">204 Microbiology, Virology and Immunology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">205 Medicine</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">20503 Human Genetics</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">21 Biology</r3d:subject>
|
|
<r3d:subject subjectScheme="DFG">22 Medicine</r3d:subject>
|
|
<r3d:missionStatementURL></r3d:missionStatementURL>
|
|
<r3d:contentType contentTypeScheme="parse">Images</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Networkbased data</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Plain text</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Scientific and statistical data formats</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Software applications</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">Structured graphics</r3d:contentType>
|
|
<r3d:contentType contentTypeScheme="parse">other</r3d:contentType>
|
|
<r3d:providerType>dataProvider</r3d:providerType>
|
|
<r3d:keyword>bovine</r3d:keyword>
|
|
<r3d:keyword>genes</r3d:keyword>
|
|
<r3d:keyword>human</r3d:keyword>
|
|
<r3d:keyword>immune response</r3d:keyword>
|
|
<r3d:keyword>interactomes</r3d:keyword>
|
|
<r3d:keyword>molecular interaction network</r3d:keyword>
|
|
<r3d:keyword>mouse</r3d:keyword>
|
|
<r3d:keyword>proteins</r3d:keyword>
|
|
<r3d:keyword>rna</r3d:keyword>
|
|
<r3d:keyword>systems biology</r3d:keyword>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">AllerGen</r3d:institutionName>
|
|
<r3d:institutionCountry>CAN</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.allergen.ca/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:048gf2b30</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">European Molecular Biology Laboratory Australia</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">EMBL Australia</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>AUS</r3d:institutionCountry>
|
|
<r3d:responsibilityType>funding</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.emblaustralia.org/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:00yx5cw48</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">European Molecular Biology Laboratory Australia, Lynn Group</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">EMBL Australia, Lynn</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>AUS</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.emblaustralia.org/research-leadership/lynn-group/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">Flinders University</r3d:institutionName>
|
|
<r3d:institutionCountry>AUS</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.flinders.edu.au/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:01kpzv902</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">HUPO Proteomics Standards Initiative</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">PSI</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>AUS</r3d:institutionCountry>
|
|
<r3d:responsibilityType>sponsoring</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.psidev.info/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">International Molecular Exchange Consortium</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">IMEx</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>AAA</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.imexconsortium.org/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">Simon Fraser University, Fiona Brinkman Laboratory</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">Brinkmann Lab</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>CAN</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:responsibilityType>technical</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://www.brinkman.mbb.sfu.ca/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
<r3d:institutionContact>innatedb-mail@sfu.ca</r3d:institutionContact>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">South Australian Health & Medical Research Institute</r3d:institutionName>
|
|
<r3d:institutionAdditionalName language="eng">SAHMRI</r3d:institutionAdditionalName>
|
|
<r3d:institutionCountry>AUS</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>https://sahmri.org.au/</r3d:institutionURL>
|
|
<r3d:institutionIdentifier>ROR:03e3kts03</r3d:institutionIdentifier>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:institution>
|
|
<r3d:institutionName language="eng">University of British Columbia, R.E.W. Hancock Laboratory</r3d:institutionName>
|
|
<r3d:institutionCountry>CAN</r3d:institutionCountry>
|
|
<r3d:responsibilityType>general</r3d:responsibilityType>
|
|
<r3d:institutionType>non-profit</r3d:institutionType>
|
|
<r3d:institutionURL>http://www.cmdr.ubc.ca/bobh/</r3d:institutionURL>
|
|
<r3d:responsibilityStartDate></r3d:responsibilityStartDate>
|
|
<r3d:responsibilityEndDate></r3d:responsibilityEndDate>
|
|
</r3d:institution>
|
|
<r3d:policy>
|
|
<r3d:policyName>IMEx Curation Rules</r3d:policyName>
|
|
<r3d:policyURL>https://www.imexconsortium.org/curation/</r3d:policyURL>
|
|
</r3d:policy>
|
|
<r3d:databaseAccess>
|
|
<r3d:databaseAccessType>open</r3d:databaseAccessType>
|
|
</r3d:databaseAccess>
|
|
<r3d:dataAccess>
|
|
<r3d:dataAccessType>open</r3d:dataAccessType>
|
|
</r3d:dataAccess>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>CC</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://creativecommons.org/licenses/by/2.5/</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataLicense>
|
|
<r3d:dataLicenseName>Copyrights</r3d:dataLicenseName>
|
|
<r3d:dataLicenseURL>https://www.innatedb.com/license.jsp</r3d:dataLicenseURL>
|
|
</r3d:dataLicense>
|
|
<r3d:dataUpload>
|
|
<r3d:dataUploadType>restricted</r3d:dataUploadType>
|
|
<r3d:dataUploadRestriction>registration</r3d:dataUploadRestriction>
|
|
</r3d:dataUpload>
|
|
<r3d:dataUploadLicense>
|
|
<r3d:dataUploadLicenseName>IMEx data submission</r3d:dataUploadLicenseName>
|
|
<r3d:dataUploadLicenseURL>https://www.imexconsortium.org/submit-your-data/</r3d:dataUploadLicenseURL>
|
|
</r3d:dataUploadLicense>
|
|
<r3d:software>
|
|
<r3d:softwareName>other</r3d:softwareName>
|
|
</r3d:software>
|
|
<r3d:versioning>yes</r3d:versioning>
|
|
<r3d:api apiType="other">https://www.innatedb.com/accessViaWS.jsp</r3d:api>
|
|
<r3d:citationGuidelineURL>https://www.innatedb.com/</r3d:citationGuidelineURL>
|
|
<r3d:enhancedPublication>unknown</r3d:enhancedPublication>
|
|
<r3d:qualityManagement>unknown</r3d:qualityManagement>
|
|
<r3d:remarks>InnateDB is active partner of the International Molcular Exchange Consortium (IMEx). Pathway data are from following databases: Kyoto encyclopedia of genes and genomes (KEGG), NCI-Nature Pathway Interaction Database (PID), Integrating Network Objects with Hierarchies (INOH) Pathway Database, NetPath and Reactome.
|
|
A mirror of InnateDB.com hosted by the David Lynn Group in Australia is available at http://innatedb.sahmri.com.</r3d:remarks>
|
|
<r3d:entryDate>2014-03-31</r3d:entryDate>
|
|
<r3d:lastUpdate>2022-06-14</r3d:lastUpdate>
|
|
</r3d:repository>
|
|
</r3d:re3data> |