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Author SHA1 Message Date
Claudio Atzori 6cb0dc3f43 extended OCRID cleaning procedure 2020-12-21 11:40:17 +01:00
Claudio Atzori 573a8a3272 Merge pull request 'Changed typo in script names' (#81) from antonis.lempesis/dnet-hadoop:master into master 
ok! LGTM
 2020-12-18 17:44:26 +01:00
Antonis Lempesis 2a074c3b2b Changed typo in script names 2020-12-18 18:40:48 +02:00
Claudio Atzori 47270d9af5 lenient mock can be lenient 2020-12-18 15:38:59 +01:00
Claudio Atzori 2e503ee101 code formatting 2020-12-17 13:47:38 +01:00
Claudio Atzori 5a3e2199b2 Merge pull request 'Creation of the action set to include the bipFinder! score' (#80) from miriam.baglioni/dnet-hadoop:bipFinder into bipFinder_master_test 2020-12-17 12:26:38 +01:00
Claudio Atzori 03319d3bd9 Revert "Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master" 
This reverts commit add7e1693b, reversing
changes made to f9a8fd8bbd.
 2020-12-17 12:23:58 +01:00
Claudio Atzori add7e1693b Merge pull request 'Creation of the action set to include the bipFinder! score' (#62) from miriam.baglioni/dnet-hadoop:bipFinder into master 2020-12-17 12:09:03 +01:00
Alessia Bardi f9a8fd8bbd updated test record for textgrid 2020-12-17 11:59:45 +01:00
Claudio Atzori 4766495f5b [orcid_to_result_from_semrel_propagation] fixed typo in SQL 2020-12-17 09:15:50 +01:00
Claudio Atzori de00094ebc Merge pull request 'FIX on the creation of subject based broker enrichments' (#79) from broker into master 2020-12-15 14:58:31 +01:00
Michele Artini f9dc1e45fd fixed a bug with invalid subject topic 2020-12-15 14:54:11 +01:00
Sandro La Bruzzo f92bd56f56 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-12-15 11:47:29 +01:00
Sandro La Bruzzo 1f6c8a9e83 added orcid_pending type to records coming from Crossref 2020-12-15 11:47:15 +01:00
Enrico Ottonello b2de598c1a all actions from download lambda file to merge updated data into one wf 2020-12-15 10:42:55 +01:00
Claudio Atzori 9f1181290e Merge pull request 'broker' (#78) from broker into master 
The changes look good to me.
 2020-12-15 10:03:45 +01:00
Michele Artini 0a0f62bd01 Merge branch 'master' into broker 2020-12-15 08:30:52 +01:00
Michele Artini 12fa5d122a fixed a problem with join 2020-12-15 08:30:26 +01:00
Michele Artini 991e675dc6 validation in claim rels 2020-12-14 15:41:25 +01:00
Michele Artini 3e19cf7b4a openaireId 2020-12-14 15:24:33 +01:00
Claudio Atzori b6f08ce226 re-adding the old junit:junit dep as solr-test-framework needs it 2020-12-14 15:07:31 +01:00
Claudio Atzori 7d325e2c57 using actual result subclasses instead of their parent class 2020-12-14 14:40:54 +01:00
Claudio Atzori 152916890f renamed test name 2020-12-14 14:40:05 +01:00
Michele Artini a203aee32a ES wf properties 2020-12-14 12:02:33 +01:00
Claudio Atzori 1506f49052 Xml record serialization for author PIDs: 1) only one value per PID type is allowed; 2) orcid prevails over orcid_pending 2020-12-14 11:14:03 +01:00
Michele Artini d03756c962 mkdir of output dir 2020-12-14 11:11:41 +01:00
Michele Artini 399548f221 whitelist of topics 2020-12-14 11:03:55 +01:00
Michele Artini 38da1c282a Merge branch 'master' into broker 2020-12-14 09:14:02 +01:00
Dimitris dc9c2f3272 Commit 12122020 2020-12-12 12:00:14 +02:00
Enrico Ottonello efe4c2a9c5 authors and works are now updated in two separate spark actions of the wf 2020-12-12 02:06:21 +01:00
Enrico Ottonello 858efbfad1 fix dataset creation for downloaded works 2020-12-11 16:49:54 +01:00
Claudio Atzori 61cd129ded XML serialisation test 2020-12-11 12:44:53 +01:00
Claudio Atzori ce7a319e01 using the correct assertion import 2020-12-11 12:44:17 +01:00
Claudio Atzori 7fe2433137 excluded transitive older junit dependencies, they can compromise the unit test executions 2020-12-11 12:42:55 +01:00
Claudio Atzori d9532446eb imported more diffs from master branch; code formatting 2020-12-10 16:14:16 +01:00
Claudio Atzori 1eaad89a3c do not fail on uknown properties when grouping entities by ID 2020-12-10 15:56:11 +01:00
Michele Artini 933b4c1ada workingDir and outputDir 2020-12-10 14:47:51 +01:00
Michele Artini 2e7df07328 workingDir and outputDir 2020-12-10 14:47:22 +01:00
Michele Artini 94bfed1c84 gzipped output 2020-12-10 11:59:28 +01:00
Claudio Atzori 12e2f930c8 resolved conflicts 2020-12-10 10:57:39 +01:00
Miriam Baglioni b7adbc7c3e merge branch with master 2020-12-10 10:35:27 +01:00
Alessia Bardi 112da6d76a in theory, just auto-formatting after mvn compile 2020-12-09 20:00:27 +01:00
Alessia Bardi bece04b330 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-12-09 19:54:43 +01:00
Alessia Bardi 426b76ee8e more asserts for TextGrid record 2020-12-09 19:46:11 +01:00
Claudio Atzori ff72fcd91a allow orcid_pending to be percolate to the XML graph serialization 2020-12-09 19:04:50 +01:00
Claudio Atzori 4705144918 Merge pull request 'rel_project_validation' (#69) from rel_project_validation into master 
LGTM
 2020-12-09 19:01:20 +01:00
Claudio Atzori 211aa04726 allow orcid_pending to be percolate to the XML graph serialization 2020-12-09 18:08:51 +01:00
Claudio Atzori ada21ad920 Merge pull request 'dump of the results related to at least one project' (#61) from miriam.baglioni/dnet-hadoop:dump into master 
LGTM
 2020-12-09 17:22:56 +01:00
Claudio Atzori 3c5ce1dada code formatting 2020-12-09 17:07:20 +01:00
Michele Artini 1bc9adc10d default trust for validated rels 2020-12-09 16:18:37 +01:00
Claudio Atzori fcd7689b50 promote actions: shouldGroupById parameter marked as optional (default is true) 2020-12-09 13:10:16 +01:00
Michele Artini 5f21a356fd reindent 2020-12-09 11:24:30 +01:00
Michele Artini 370a5e650b validation attributes in resultProject relations 2020-12-09 11:18:26 +01:00
Antonis Lempesis aead9efd24 added the new parameter (stats_tool_api_url) in the workflow parameters 2020-12-09 10:45:24 +01:00
Antonis Lempesis 77a3a6d82e added the new parameter (stats_tool_api_url) in the workflow parameters 2020-12-09 10:45:24 +01:00
Antonis Lempesis 91226117b3 ignoring deletedbyinference relations 2020-12-09 10:45:24 +01:00
Antonis Lempesis b7f29db126 finished first implementation of wf 2020-12-09 10:45:24 +01:00
Antonis Lempesis ded2392275 initial implementation of the promote wf 2020-12-09 10:45:24 +01:00
Antonis Lempesis 1a87a1effd added last step to update cache 2020-12-09 10:45:24 +01:00
Enrico Ottonello 2233750a37 original orcid xml data are stored in a field of the class that models orcid data 2020-12-09 09:45:19 +01:00
Claudio Atzori 27e96767e0 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-12-07 21:53:22 +01:00
Claudio Atzori fba11eef2a cleanup 2020-12-07 21:53:13 +01:00
Sandro La Bruzzo 7f8b93de72 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-12-07 19:59:39 +01:00
Sandro La Bruzzo 302baab67b fixed doiboost mapping and workflows 2020-12-07 19:59:33 +01:00
Enrico Ottonello 5c65e602d3 wf doi_authors generates one json data foreach row 2020-12-07 15:28:10 +01:00
Michele Artini d6934f370e Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-12-07 14:56:23 +01:00
Michele Artini 5de8a7276f wf to partition opendoar events 2020-12-07 14:56:06 +01:00
Claudio Atzori 5e8509bef7 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-12-07 13:50:08 +01:00
Claudio Atzori 026ad40633 disabled test 2020-12-07 13:50:01 +01:00
Claudio Atzori 21ddcf3a73 actions promotion can optionally avoid grouping objects by id (configured via shouldGroupById parameter) 2020-12-07 13:45:18 +01:00
Enrico Ottonello fa1855a4b8 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-12-07 11:02:59 +01:00
Enrico Ottonello b1b589ada1 wf to generate orcid dataset 2020-12-07 11:02:32 +01:00
Sandro La Bruzzo 620e585b63 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-12-07 10:42:53 +01:00
Sandro La Bruzzo b31dd126fb fixed crossref workflow added common ORCID Class 2020-12-07 10:42:38 +01:00
Enrico Ottonello 8812ab65e1 completed download function to wf; added accumulators 2020-12-04 21:13:49 +01:00
Claudio Atzori a104a632df cleanup 2020-12-04 16:32:47 +01:00
Claudio Atzori 5b4e1142a8 Merge pull request 'added last step to update cache' (#64) from antonis.lempesis/dnet-hadoop:master into master 
Looks good to me, thanks!
 2020-12-04 14:42:31 +01:00
Antonis Lempesis b1ed1afdcc added the new parameter (stats_tool_api_url) in the workflow parameters 2020-12-04 13:07:18 +02:00
Antonis Lempesis 7cb113e088 added the new parameter (stats_tool_api_url) in the workflow parameters 2020-12-04 13:04:25 +02:00
Antonis Lempesis d23ccae0d5 ignoring deletedbyinference relations 2020-12-04 12:42:17 +02:00
Miriam Baglioni 5fb65ffc4a merge branch with master 2020-12-03 11:24:35 +01:00
Miriam Baglioni ea88dc3401 fixed issue in property name 2020-12-03 11:24:23 +01:00
Miriam Baglioni 4c58bd1c93 merge with upstream 2020-12-03 11:24:00 +01:00
Miriam Baglioni 05c452f58d merge with upstream 2020-12-03 10:26:45 +01:00
Enrico Ottonello 53b22c1937 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-12-02 23:21:27 +01:00
Enrico Ottonello 1b1e9ea67c wf to generate doi_author_list for doiboost; wf to download updated works 2020-12-02 23:20:16 +01:00
Antonis Lempesis 413afcfed5 finished first implementation of wf 2020-12-02 15:57:17 +02:00
Antonis Lempesis 0948536614 initial implementation of the promote wf 2020-12-02 15:41:56 +02:00
Sandro La Bruzzo 7da679542f fixed wrong projectId 2020-12-02 14:28:09 +01:00
Sandro La Bruzzo 6ba8037cc7 fixed failure to test due to changing of input 2020-12-02 11:34:46 +01:00
Claudio Atzori cfb55effd9 code formatting 2020-12-02 11:23:49 +01:00
Claudio Atzori 74242e450e using constants from ModelConstants 2020-12-02 11:23:35 +01:00
Miriam Baglioni d5efa6963a using constants in ModelCOnstants 2020-12-02 11:20:26 +01:00
Miriam Baglioni cd285e98bc usoing the constants defined in the ModelConstants class 2020-12-02 11:13:23 +01:00
Miriam Baglioni 4b0d1530a2 merge upstream 2020-12-02 11:05:00 +01:00
Claudio Atzori faa977df7e Merge pull request 'orcid-no-doi' (#43) from enrico.ottonello/dnet-hadoop:orcid-no-doi into master 
The dataset was generated and is now part of the actionsets available in BETA
 2020-12-02 10:55:12 +01:00
Claudio Atzori 57f448b7a4 graph cleaning workflow separate orcid_pending from orcid, depending on the author pid provenance 2020-12-02 10:44:05 +01:00
Alessia Bardi 2d15667b4a testing XML generation from json object (case AMS ACTA) 2020-12-02 10:16:26 +01:00
Alessia Bardi a417624670 tests for raw graph mapping 2020-12-02 10:15:26 +01:00
Claudio Atzori 893ac4a77b GenerateEntitiesApplication can be configured to hash the id value or not 2020-12-02 09:30:06 +01:00
Miriam Baglioni f8468c9c22 added extention for new author pid (orcid_pending) 2020-12-01 20:09:35 +01:00
Miriam Baglioni 888175baf7 added java doc 2020-12-01 18:36:29 +01:00
Miriam Baglioni 3d62d99d5d fixed issue in workflow variable 2020-12-01 15:02:49 +01:00
Miriam Baglioni 17680296b9 removed unnecessary variable and unused method 2020-12-01 15:02:31 +01:00
Miriam Baglioni 5b3ed70808 refactoring 2020-12-01 14:31:34 +01:00
Miriam Baglioni 62ff4999e3 added workflow and last step of collection and save 2020-12-01 14:30:56 +01:00
Miriam Baglioni 45d06c45c7 collecting all the atoic actions for result type and save them all in the AS path 2020-12-01 14:29:18 +01:00
Miriam Baglioni 0051ebede5 extending test 2020-12-01 12:43:03 +01:00
Miriam Baglioni 719da15f04 added test resources 2020-12-01 12:42:30 +01:00
Miriam Baglioni db36e11912 classes test classes and resources for production of the actionset to include bipFinder score in results 2020-11-30 20:14:23 +01:00
Enrico Ottonello f2df3ead74 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-30 14:22:46 +01:00
Enrico Ottonello 40c4559e92 added datainfo on authors pid with "sysimport:crosswalk:entityregistry", 2020-11-30 14:19:22 +01:00
Claudio Atzori 2c407e775e GenerateEntitiesApplication can be configured to hash the id value or not 2020-11-30 12:00:38 +01:00
Antonis Lempesis 815d6b25d9 added last step to update cache 2020-11-30 00:48:10 +02:00
Claudio Atzori 758d27745d cleaning tab characters from text fields 2020-11-27 16:07:24 +01:00
Claudio Atzori e731a7658d cleaning texts to remove tab characters too 2020-11-27 09:00:04 +01:00
Claudio Atzori 5151850a19 CROSSREF and DATACITE constants moved in common ModelConstants 2020-11-26 13:08:36 +01:00
Claudio Atzori a104d2b6ad cleanup 2020-11-26 11:12:00 +01:00
Claudio Atzori d0d5525d40 minor changes 2020-11-26 11:04:17 +01:00
Claudio Atzori 13eae4b31e GroupEntitiesSparkJob must read all graph paths but relations 2020-11-26 11:04:01 +01:00
Claudio Atzori 76363a8512 SimpleDateFormat is not thread safe; improved error reporting in case of invalid dates 2020-11-26 11:03:12 +01:00
Claudio Atzori c1b9a4045a grouping of records will be performed by the dedup workflow 2020-11-26 10:59:10 +01:00
Miriam Baglioni 124591a7f3 refactoring 2020-11-25 18:23:28 +01:00
Miriam Baglioni 1a89f8211c D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:12:40 +01:00
Miriam Baglioni 5fbe54ef54 D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:10:28 +01:00
Miriam Baglioni ed01e5a5e1 D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:09:34 +01:00
Miriam Baglioni d4ddde2ef2 changed because of D-Net/dnet-hadoop#61 (comment) 2020-11-25 18:01:01 +01:00
Miriam Baglioni f5e5e92a10 changed because of D-Net/dnet-hadoop#61 (comment) 2020-11-25 17:58:53 +01:00
Miriam Baglioni 1df94b85b4 changed because of D-Net/dnet-hadoop#61 (comment) 2020-11-25 17:57:43 +01:00
Claudio Atzori db0181b8af Merge pull request 'added bidirectionality to relations from project and result coming from crossref' (#60) from miriam.baglioni/dnet-hadoop:sxBidirectionality into master 2020-11-25 17:17:40 +01:00
Sandro La Bruzzo ec3e238de6 Fixed problem on duplicated identifier 2020-11-25 17:15:54 +01:00
Claudio Atzori e208b03755 renamed workflow 2020-11-25 14:55:50 +01:00
Claudio Atzori dfd6205b95 Consistency graph workflow merges all the entities by ID 2020-11-25 14:55:32 +01:00
Miriam Baglioni 90d4369fd2 added test to verify the compression in writing community info on hdfs 2020-11-25 14:34:58 +01:00
Miriam Baglioni 6750e33d69 merge branch with master 2020-11-25 14:09:01 +01:00
Miriam Baglioni b2c455f883 added java doc 2020-11-25 14:08:09 +01:00
Miriam Baglioni 1f130cdf92 changed the relation (produces -> isProducedBy) due to the change in the code 2020-11-25 14:04:26 +01:00
Miriam Baglioni e758d5d9b4 refactoring 2020-11-25 13:46:39 +01:00
Miriam Baglioni 87a9f616ae refactoring and addition of the funder nsp first part as nome for the dump insteasd of the whole nsp 2020-11-25 13:45:41 +01:00
Miriam Baglioni e7e418e444 added decision node to verify if to upload in Zenodo 2020-11-25 13:44:10 +01:00
Miriam Baglioni 305e3d0c9c added resource file for relation with relClass = isProducedBy 2020-11-25 13:43:41 +01:00
Miriam Baglioni 21ce175d17 added FilterFunction specification if filter operation 2020-11-25 13:42:31 +01:00
Miriam Baglioni bde6d337dd test classes for dump of results related to funders 2020-11-25 13:42:01 +01:00
Miriam Baglioni b37b9352d7 added constant value for semantic relationship between projects and results 2020-11-25 13:41:08 +01:00
Sandro La Bruzzo 264723ffd8 updated stuff for zenodo upload 2020-11-25 11:56:07 +01:00
Claudio Atzori 36173c13a5 reverted filters in the clening process 2020-11-25 10:24:42 +01:00
Claudio Atzori eeebd5a920 Cleanig workflow: remove newlines from titles, descriptions, subjects 2020-11-24 18:40:25 +01:00
Claudio Atzori e1a1bb3ee4 moved class CleaningFunctions in the correct package. Remove newlines from titles, descriptions, subjects 2020-11-24 18:34:03 +01:00
Enrico Ottonello 99a086f0c6 max concurrent executors set to 10, according to ORCID Director of Technology mail request 2020-11-24 17:49:32 +01:00
Miriam Baglioni 72bb0fe360 changed directory name 2020-11-24 16:47:07 +01:00
Miriam Baglioni 00874a8ce6 added bidirectionality to relations from project and result 2020-11-24 15:17:23 +01:00
Miriam Baglioni 39f4a20873 chenged the path and the name for saving the communities_infrastructures dump file 2020-11-24 14:47:32 +01:00
Miriam Baglioni 7e14452a87 final versione of the wf to get the dump of results associated to at least one funder per funder 2020-11-24 14:46:34 +01:00
Miriam Baglioni c167a18057 added new parameter for the dumpType 2020-11-24 14:45:50 +01:00
Miriam Baglioni 54a309bb6b refactoring 2020-11-24 14:45:30 +01:00
Miriam Baglioni 35ecea8842 changed to consider the modification for the specification of the type of dump 2020-11-24 14:45:15 +01:00
Miriam Baglioni b9b6bdb2e6 fixing issue on previous implementation 2020-11-24 14:44:53 +01:00
Miriam Baglioni 7e940f1991 changed to consider the modification for the specification of the type of dump 2020-11-24 14:43:34 +01:00
Miriam Baglioni 62928ef7a5 changed to save the communities_infrastructures information as the other entity dumps: in a json.gz file 2020-11-24 14:42:41 +01:00
Claudio Atzori 33bae02451 reverted behaviour of the cleaning workflow: grouping entities by ID will be managed differently 2020-11-24 14:42:33 +01:00
Miriam Baglioni 3319440c53 changed the direction of the relation between projects and result considered to select the results linked to projects 2020-11-24 14:41:09 +01:00
Miriam Baglioni 00c377dac2 added specification of MapFunction types in map 2020-11-24 14:40:22 +01:00
Miriam Baglioni 44db258dc4 added enumerated for the dump type 2020-11-24 14:38:06 +01:00
Miriam Baglioni 1832708c42 modified boolean variable with string one whcih specify the type of dump we are performing: complete, community or funder 2020-11-24 14:37:36 +01:00
Enrico Ottonello 5c17e768b2 set wf configuration with spark.dynamicAllocation.maxExecutors 20 over 20 input partitions 2020-11-23 16:01:23 +01:00
Enrico Ottonello 5c9a727895 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-23 09:49:53 +01:00
Enrico Ottonello 97c8111847 action to convert lambda file in seq file; spark action to download updated authors 2020-11-23 09:49:22 +01:00
Miriam Baglioni 259c67ce36 fixed issue in path name 2020-11-20 12:32:23 +01:00
Miriam Baglioni 0a9db67eec - 2020-11-20 12:21:33 +01:00
Miriam Baglioni d362f2637d merge branch with master 2020-11-19 19:17:20 +01:00
Miriam Baglioni cf3f47563f new parameter files 2020-11-19 19:16:05 +01:00
Miriam Baglioni 24c56fa7a3 new logic and workflow for dump of results with link to projects. In this implementation the result match the model of the communityresult. 2020-11-19 19:15:39 +01:00
Claudio Atzori d48f388fb2 Merge branch 'provision_indexing' 2020-11-19 15:59:55 +01:00
Claudio Atzori 46bde9c13f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-19 15:26:27 +01:00
Claudio Atzori 7c9feaf9e7 project attributes removed from the XML record serialization: contactfullname, contactfax, contactphone, contactemail 2020-11-19 15:26:20 +01:00
Claudio Atzori fcbb05eb21 cleanup 2020-11-19 15:14:33 +01:00
Claudio Atzori 3f34757c63 merged from master 2020-11-19 14:34:54 +01:00
Michele Artini 293da47ad9 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-11-19 10:42:31 +01:00
Michele Artini ab08d12c46 considering abstract > MIN_LENGTH in ENRICH_MISSING_ABSTRACT 2020-11-19 10:42:10 +01:00
Claudio Atzori e503271abe fixed notification workflow name 2020-11-19 10:41:38 +01:00
Claudio Atzori 0374d34c3e introduced configuration param outputFormat: HDFS | SOLR 2020-11-19 10:34:28 +01:00
Miriam Baglioni fafb688887 - 2020-11-18 18:56:48 +01:00
Miriam Baglioni 906db690d2 - 2020-11-18 17:43:08 +01:00
Claudio Atzori ede7fae6c8 Merge pull request 'XML record indexing test' (#58) from provision_indexing into master 2020-11-18 17:04:34 +01:00
Miriam Baglioni 5402062ff5 changed parameter file with the ono associated to the job 2020-11-18 16:58:20 +01:00
Miriam Baglioni a172a37ad1 fixed typo 2020-11-18 16:55:07 +01:00
Miriam Baglioni 46ba3793f6 code, workflow and parameters for the dump of the results associated to funders 2020-11-18 16:47:31 +01:00
Claudio Atzori 5218718e8b updated set of fields from the MDFormatDSResourceType on PROD 2020-11-18 15:00:41 +01:00
Claudio Atzori d9e07a242b extended XmlIndexingJob to accept an optional parameter: outputPath. When present, forces the job to write its output on the specified HDFS location 2020-11-18 14:34:55 +01:00
Claudio Atzori 29dcff0f34 spark complains about missing classes, so here they are again 2020-11-18 14:32:32 +01:00
Miriam Baglioni 57cac36898 changed the workflow name 2020-11-18 13:38:03 +01:00
Claudio Atzori 12acf25519 Merge pull request 'starting from first step...' (#57) from antonis.lempesis/dnet-hadoop:master into master 
No judging. Just re-deploying...
 2020-11-18 11:01:49 +01:00
Claudio Atzori 8177ce7939 test for XmlIndexingJob based on a local miniSolrCluster 2020-11-18 10:58:05 +01:00
Alessia Bardi 10e673660f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-18 10:01:23 +01:00
Alessia Bardi be7b310cef rel semantcis ignore case 2020-11-18 10:01:20 +01:00
Michele Artini 33da2e3d6c xpaths for dateOfCollection and dateOfTransformation 2020-11-18 09:26:20 +01:00
Antonis Lempesis 01a6e03989 starting from first step... 2020-11-17 23:26:47 +02:00
Alessia Bardi 8f87020a50 #56: map relevantDates from aggregated ODF records 2020-11-17 18:42:09 +01:00
Alessia Bardi 7e0a76a8ac test fr TextGrid 2020-11-17 18:39:25 +01:00
Enrico Ottonello 2b0c9bbb7e Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-17 18:24:34 +01:00
Enrico Ottonello c0c2e05eae added wf to extracting authors and works xml data from orcid dump to hdfs; added wf to download the lamda file (containing last orcid update informations) from orcid to hdfs 2020-11-17 18:23:12 +01:00
Claudio Atzori cfc01f136e PID filtering based on a blacklist 2020-11-17 12:27:06 +01:00
Dimitris bbcf6b7c8b Commit 17112020 2020-11-17 08:36:51 +02:00
Enrico Ottonello c796adae24 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-16 11:57:19 +01:00
Claudio Atzori 6ab1ce53c9 fixed condition in result pid cleaning; cleanup 2020-11-16 10:09:17 +01:00
Claudio Atzori 4de8c8b237 fixed workflow variable name 2020-11-16 10:03:11 +01:00
Dimitris 3e24c9b176 Changes 14112020 2020-11-14 18:42:07 +02:00
Claudio Atzori 331d621800 added test resource 2020-11-14 12:16:15 +01:00
Claudio Atzori 5d4e34e26a fixed typo in variable name 2020-11-14 10:32:26 +01:00
Claudio Atzori 768bc5304c Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-13 15:40:34 +01:00
Claudio Atzori 93f7b7974f Merge pull request 'trust truncated to 3 decimals' (#24) from trunc_trust into master 
LGTM
 2020-11-13 15:40:02 +01:00
Claudio Atzori 528231a287 grouping graph entities by id turned out to be an easy extension for the already existing cleaning workflow 2020-11-13 15:37:48 +01:00
Enrico Ottonello 005f849674 added compression to output dataset 2020-11-13 12:45:31 +01:00
Enrico Ottonello 9a2fa9dc2f added test for other names parsing from summaries dump 2020-11-13 10:25:34 +01:00
Claudio Atzori 2bed29eb09 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:12 +01:00
Claudio Atzori 13e36a4da0 WIP: added oozie workflow for grouping graph entities by id 2020-11-13 10:05:02 +01:00
Enrico Ottonello 13f28fa225 moved AuthorData to dhp-schemas; added other names to author data 2020-11-12 17:43:32 +01:00
Enrico Ottonello 2af21150c5 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-12 09:58:33 +01:00
Claudio Atzori 9b0fb9e958 merged from master 2020-11-12 09:27:12 +01:00
Claudio Atzori 75324ae58a Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-11-12 09:23:37 +01:00
Claudio Atzori 822971f54f no need to filter relations in CreateRelatedEntitiesJob_phase1; replaced 'left outer' join with 'left' join in CreateRelatedEntitiesJob_phase2; cleanup; 2020-11-12 09:22:59 +01:00
Enrico Ottonello 1f861f2b0d now wf output is a sequence file with the format seq("eu.dnetlib.dhp.schema.oaf.Publication",eu.dnetlib.dhp.schema.action.AtomicActions) 2020-11-11 17:38:50 +01:00
Claudio Atzori 9841488482 Merge pull request 'latest changes in stats wf' (#54) from antonis.lempesis/dnet-hadoop:master into master 
LGTM, thanks!
 2020-11-11 16:01:51 +01:00
Antonis Lempesis 99ebaee347 fixed #5913 2020-11-11 16:56:46 +02:00
Claudio Atzori e3d3481fb9 Merge pull request 'organizations pids' (#53) from organization_pids into master 
LGTM
 2020-11-11 14:08:25 +01:00
Antonis Lempesis f14e65f6a3 reverted wrong change 2020-11-10 17:23:04 +02:00
Antonis Lempesis c02c7741c9 fixes in db creation 2020-11-10 17:11:30 +02:00
Antonis Lempesis e603fa5847 fixes in db creation 2020-11-10 17:11:12 +02:00
Enrico Ottonello fea2451658 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop into orcid-no-doi 2020-11-10 11:49:43 +01:00
Claudio Atzori 18d9aad70c improved documentation in dhp-graph-provision 2020-11-10 11:48:55 +01:00
Enrico Ottonello 1513174d7e added further test case 2020-11-10 11:44:55 +01:00
Michele Artini 40160d171f organizations pids 2020-11-09 12:58:36 +01:00
Sandro La Bruzzo 8e1d43aab2 Implemented ID generation using IdentifierRecordFactory on DOIBoost 2020-11-09 11:53:55 +01:00
Sandro La Bruzzo 027ef2326c Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-11-06 17:12:42 +01:00
Sandro La Bruzzo cd27df91a1 fixed bug on missing relation in ANDS 2020-11-06 17:12:31 +01:00
Enrico Ottonello 6bc7dbeca7 first version of dataset successful generated from orcid dump 2020 2020-11-06 13:47:50 +01:00
Claudio Atzori d10447e747 re-packaged graph dump workflow sources 2020-11-05 17:38:18 +01:00
Claudio Atzori 2d76497488 cleanup 2020-11-05 17:10:24 +01:00
Miriam Baglioni f8e9bda24c merge branch with master 2020-11-05 16:31:18 +01:00
Miriam Baglioni be5ed8f554 added check to avoid sending empty metadata. 2020-11-05 16:10:17 +01:00
Claudio Atzori 2148a51fae minor changes 2020-11-05 11:24:12 +01:00
Claudio Atzori 4625b7486e code formatting 2020-11-04 18:12:43 +01:00
Claudio Atzori f5f346dd2b Merge pull request 'dump' (#50) from miriam.baglioni/dnet-hadoop:dump into master 
LGTM
 2020-11-04 18:07:01 +01:00
Miriam Baglioni e9ac471ae9 removed dependency from classes for the pid graph dump 2020-11-04 18:04:42 +01:00
Miriam Baglioni b90a945c49 removed property files for pid graph dump 2020-11-04 17:28:33 +01:00
Miriam Baglioni bac307155a removed properties specific for pid graph dump 2020-11-04 17:28:04 +01:00
Miriam Baglioni 9c9d50f486 removed code specific for pid graph dump 2020-11-04 17:26:22 +01:00
Miriam Baglioni 5669890934 removed commented lines 2020-11-04 17:15:21 +01:00
Miriam Baglioni 6a89f59be9 removed commented lines 2020-11-04 17:13:59 +01:00
Miriam Baglioni 56150d7e5e removed all code related to the dump of pids graph 2020-11-04 17:13:12 +01:00
Miriam Baglioni 16c54a96f8 removed pid dump 2020-11-04 17:11:32 +01:00
Claudio Atzori e5da4ee9b1 dedup workflow using the common PidComparator 2020-11-04 15:02:02 +01:00
Miriam Baglioni 0cac5436ff Merge branch 'dump' of code-repo.d4science.org:miriam.baglioni/dnet-hadoop into dump 2020-11-04 13:21:11 +01:00
Alessia Bardi 51808b5afd Updated descriptions 2020-11-04 12:29:48 +01:00
Alessia Bardi e6becf8659 Updated descriptions 2020-11-04 12:17:57 +01:00
Alessia Bardi 0abe0eee33 Updated descriptions 2020-11-04 12:15:30 +01:00
Alessia Bardi f6ab238f5d Updated descriptions 2020-11-04 11:50:47 +01:00
Sandro La Bruzzo 3581244daf Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-11-04 09:04:22 +01:00
Sandro La Bruzzo 66efb39634 implemented merge scholix 2020-11-04 09:04:01 +01:00
Miriam Baglioni c010a8442f fixed issue on test code 2020-11-03 17:26:51 +01:00
Miriam Baglioni 8ec7a61188 merge branch with master 2020-11-03 16:59:08 +01:00
Miriam Baglioni c209284ca7 new schemas for the entities in the dump with added descriptions 2020-11-03 16:58:08 +01:00
Miriam Baglioni 08806deddf added the splitSize non mandatory parameter. Default size 10G 2020-11-03 16:57:34 +01:00
Miriam Baglioni 7d2eda43ca added new non mandatory property publish to determine if to publish the upload or leave it pending. Default value flase 2020-11-03 16:57:01 +01:00
Miriam Baglioni cbbb1bdc54 moved business logic to new class in common for handling the zip of hte archives 2020-11-03 16:55:50 +01:00
Miriam Baglioni d4382b54df moved the tar archive with maz size on common module 2020-11-03 16:54:50 +01:00
Claudio Atzori 86d6fbe95b refactoring: CleaningFunctions and OafMapperUtils moved in dhp-commong 2020-11-03 12:19:46 +01:00
Claudio Atzori 8471888ad3 Merge branch 'graph_cleaning' into stable_ids 2020-11-03 11:52:47 +01:00
Claudio Atzori 5310e56dba remove empy PIDs 2020-11-03 11:52:10 +01:00
Claudio Atzori 3fcd669e99 result merge operation leverage on custom ResultTypeComparator in the aggregator graph construction 2020-11-03 10:53:23 +01:00
Claudio Atzori 8e7f81c5f5 code formatting 2020-11-02 14:25:00 +01:00
Claudio Atzori 09e44dabff Merge branch 'master' into stable_ids 2020-11-02 12:16:01 +01:00
Sandro La Bruzzo 754c86f33e fixed test to work on jenkins 2020-11-02 09:35:01 +01:00
Sandro La Bruzzo 39337d8a8a fixed test 2020-11-02 09:26:25 +01:00
Dimitris 32bf943979 Changes to download only updates 2020-11-02 09:08:25 +02:00
Miriam Baglioni dabb33e018 changed the discriminant for which split the file 2020-10-30 17:52:22 +01:00
Claudio Atzori c5dda3a00c Merge pull request 'h2020classification' (#49) from miriam.baglioni/dnet-hadoop:h2020classification into master 
LGTM
 2020-10-30 17:10:05 +01:00
Miriam Baglioni 4905739be6 changed resource file to mirror change in business logic 2020-10-30 17:02:57 +01:00
Miriam Baglioni b40360ebfb changed the code to mirror the changed decision in the classification level and prodramme description labels 2020-10-30 17:02:30 +01:00
Miriam Baglioni 696409fb9f disabled tests because needing remote resource 2020-10-30 17:01:48 +01:00
Miriam Baglioni 0fba08eae4 max allowed size per file 10 Gb 2020-10-30 16:05:55 +01:00
Claudio Atzori 385214eeae code formatting 2020-10-30 15:47:05 +01:00
Claudio Atzori 04ad8969b2 anticipated execution of the graph cleaning workflow 2020-10-30 15:46:55 +01:00
Claudio Atzori 4ca75d6951 Merge pull request 'Dedup ID creation policy' (#48) from deduptesting into stable_ids 2020-10-30 15:15:32 +01:00
Miriam Baglioni b828587252 prevent the code to cicle indefinetly 2020-10-30 15:01:25 +01:00
Miriam Baglioni f747e303ac classes for dumping of the graph as ttl file 2020-10-30 14:13:45 +01:00
Miriam Baglioni 16baf5b69e formatting 2020-10-30 14:13:14 +01:00
Miriam Baglioni a9eef9c852 added check for possible Optional value in relation dataInfo 2020-10-30 14:12:28 +01:00
Miriam Baglioni 5f4de9a962 formatting 2020-10-30 14:11:40 +01:00
Miriam Baglioni 14bf2e7238 added option to split dumps bigger that 40Gb on different files 2020-10-30 14:09:04 +01:00
Dimitris b8a3392b59 Commit 30102020 2020-10-30 14:07:21 +02:00
Claudio Atzori 58f28296ea ProvisionConstants moved as ModelHardLimits in dhp-common and applied to truncate long abstracts (len > 150000). Further filtering for empty PID values 2020-10-30 10:56:42 +01:00
Miriam Baglioni 78fdb11c3f merge branch with master 2020-10-29 12:55:22 +01:00
Sandro La Bruzzo 1d9fdb7367 fixed spark memory issue in SparkSplitOafTODLIEntities 2020-10-28 12:30:32 +01:00
Miriam Baglioni d2374e3b9e added code to handle cases where the funding tree is not existing 2020-10-27 16:15:21 +01:00
Miriam Baglioni 5d3012eeb4 changed code to dump only the programme list and not the classification list 2020-10-27 16:14:18 +01:00
Miriam Baglioni 3241ec1777 added connection timeout and socket timeout 600 sec 2020-10-27 16:12:11 +01:00
Enrico Ottonello 9818e74a70 added dependency version in main pom.xml for orcid no doi 2020-10-22 16:38:00 +02:00
Enrico Ottonello 210a50e4f4 replaced null value 2020-10-22 16:24:42 +02:00
Enrico Ottonello b0290dbcb7 moved all dependencies version to main pom.xml 2020-10-22 16:20:46 +02:00
Enrico Ottonello a38ab57062 let run test methods 2020-10-22 15:43:50 +02:00
Enrico Ottonello 1139d6568d replaced null value with a more safe empty string as return value 2020-10-22 15:32:26 +02:00
Enrico Ottonello c58db1c8ea added filter on null value after map function 2020-10-22 15:11:02 +02:00
Enrico Ottonello 846ba30873 if typologies mapping fails, an exception will be propagated 2020-10-22 14:36:18 +02:00
Enrico Ottonello c3114ba0ae replaced null as return value with a more safe empty string 2020-10-22 14:21:31 +02:00
Enrico Ottonello c295c71ca0 added comment 2020-10-22 14:07:26 +02:00
Enrico Ottonello ab083f9946 propagate exception on parsing work (PR request) 2020-10-22 14:02:32 +02:00
sandro 3a81a940b7 solved bug on merge publication 2020-10-21 22:41:55 +02:00
Miriam Baglioni a2ce527fae changed to match the requirements for short titles in level and long titles in classification 2020-10-20 17:03:25 +02:00
Sandro La Bruzzo 346ed65e2c added upload to zenodo node 2020-10-20 16:59:55 +02:00
sandro 271b4db450 Merge branch 'master' of code-repo.d4science.org:D-Net/dnet-hadoop 2020-10-20 16:09:49 +02:00
sandro d58d02d448 added workflow upload on zenodo 2020-10-20 16:09:07 +02:00
miconis c4a59d1b9a merge with the master to port the new packages 2020-10-20 16:07:30 +02:00
miconis 708d887e64 minor changes 2020-10-20 15:12:19 +02:00
miconis 0e54803177 bug fix in the id generator and implementation of jobs for organization dedup 2020-10-20 12:19:46 +02:00
Alessia Bardi 1425d810a8 testing mapping 2020-10-19 17:46:14 +02:00
Claudio Atzori 266bf1a221 common IdentifierFactory in use on the mapping from the aggregator data; merge the entities sharing the same id; code formatting 2020-10-16 17:02:10 +02:00
Claudio Atzori 34f1d0904b common IdentifierFactory in use on the mapping from the aggregator data 2020-10-16 16:00:19 +02:00
Sandro La Bruzzo fed711da80 Merge remote-tracking branch 'origin/master' into merge_record_to_common 2020-10-13 15:32:45 +02:00
Sandro La Bruzzo 34bf64c94f fixed export Scholexplorer to OpenAire 2020-10-13 08:47:58 +02:00
Alessia Bardi 8775a64bc1 Merge pull request 'Merging different compatibility levels (pinocchio operator)' (#47) from merge_graph into master 2020-10-09 14:44:52 +02:00
Claudio Atzori e751c1402f Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-10-09 13:53:21 +02:00
Claudio Atzori b961dc7d1e added originalid to the fields in the result graph view 2020-10-09 13:53:15 +02:00
miconis 6f8720982c bug fix in the idgenerator and test implementation 2020-10-09 09:30:23 +02:00
Sandro La Bruzzo 734934e2eb fixed error on empty intersection with publication and relation on export to OAF 2020-10-08 17:29:29 +02:00
Sandro La Bruzzo eec418cd26 moved AuthoreMerger into dhp-common 2020-10-08 10:33:55 +02:00
Sandro La Bruzzo fe0a7870e6 Added test to check if merge authors works 2020-10-08 10:33:12 +02:00
Sandro La Bruzzo cd9c377d18 adpted scholexplorer Dump generation to the new Dataset definition 2020-10-08 10:10:13 +02:00
Claudio Atzori a3f37a9414 javadoc 2020-10-07 16:44:22 +02:00
Claudio Atzori 8d85a2fced [BETA wf only] datasources involved in the merge operation doesn't obey to the infra precedence policy, but relies on a custom behaviour that, given two datasources from beta and prod returns the one from prod with the highest compatibility among the two 2020-10-07 16:28:52 +02:00
Claudio Atzori 5f7b75f5c5 code formatting 2020-10-07 13:22:54 +02:00
miconis 1804c5d809 refactoring: classes moved in the right package 2020-10-06 16:44:51 +02:00
miconis 7093355487 bug fix and minor changes 2020-10-06 16:21:34 +02:00
miconis 5a8bc329c5 bug fix in the result merge: it takes the correct bestaccessright basing on the license instead of the trust 2020-10-06 15:26:44 +02:00
miconis a2ac7e52fb implementation of the workflow for new organizations in openorgs 2020-10-06 13:58:09 +02:00
Miriam Baglioni 061527f06e adding short description 2020-10-05 13:54:39 +02:00
Miriam Baglioni 0c12d7bdd8 adding short description 2020-10-05 11:39:55 +02:00
Miriam Baglioni ae08b3c0dd merge branch with master 2020-10-05 11:35:55 +02:00
Miriam Baglioni 11b7eaae09 changed the name of the folder where to store the context entity from context to communities_infrastructures 2020-10-05 11:24:54 +02:00
Miriam Baglioni 32bffb0134 changed the name from communities_infrastructures to communities_infrastuctures.json 2020-10-05 11:24:17 +02:00
Claudio Atzori 23f64d9eb4 updated dedup tests following the dnet-pace-core library update 2020-10-02 14:30:53 +02:00
Miriam Baglioni fc2f7636be removed not used code 2020-10-02 12:33:52 +02:00
Miriam Baglioni 25cbcf6114 changed to solve issues about names. context renamed communities_infrastructure.json and removed the double json.gz extention to the name of the part in the tar 2020-10-02 12:17:46 +02:00
Claudio Atzori 9db0f88fb8 Merge branch 'master' of https://code-repo.d4science.org/D-Net/dnet-hadoop 2020-10-02 09:43:35 +02:00
Claudio Atzori 49ae3450a9 code formatting 2020-10-02 09:43:24 +02:00
Claudio Atzori c2a6e2a9bf fixed mapping for datasource journal info (ISSNs) 2020-10-02 09:37:08 +02:00
Miriam Baglioni 01117a46e1 whole workflow activated 2020-10-01 17:19:21 +02:00
Miriam Baglioni cfb5766c6b removed double json.gz from names of files in the tar 2020-10-01 17:18:34 +02:00
Miriam Baglioni fcaedac980 merge branch with master 2020-10-01 16:46:59 +02:00
Miriam Baglioni c6e6ed1bd8 merge branch with master 2020-10-01 16:24:41 +02:00