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merge with the master to port the new packages

This commit is contained in:
miconis 2020-10-20 16:07:30 +02:00
commit c4a59d1b9a
511 changed files with 32268 additions and 2635 deletions

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@ -19,7 +19,7 @@
<setting id="org.eclipse.jdt.core.formatter.insert_space_between_empty_parens_in_annotation_type_member_declaration" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_before_comma_in_method_declaration_throws" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_switch_statement" value="common_lines"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_javadoc_comments" value="true"/>
<setting id="org.eclipse.jdt.core.formatter.comment.format_javadoc_comments" value="false"/>
<setting id="org.eclipse.jdt.core.formatter.indentation.size" value="4"/>
<setting id="org.eclipse.jdt.core.formatter.insert_space_after_postfix_operator" value="do not insert"/>
<setting id="org.eclipse.jdt.core.formatter.parentheses_positions_in_enum_constant_declaration" value="common_lines"/>

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@ -87,6 +87,22 @@
<groupId>org.postgresql</groupId>
<artifactId>postgresql</artifactId>
</dependency>
<dependency>
<groupId>com.squareup.okhttp3</groupId>
<artifactId>okhttp</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib</groupId>
<artifactId>dnet-pace-core</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib.dhp</groupId>
<artifactId>dhp-schemas</artifactId>
<version>${project.version}</version>
</dependency>
</dependencies>
</project>

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@ -0,0 +1,53 @@
package eu.dnetlib.dhp.common.api;
import java.io.IOException;
import java.io.InputStream;
import okhttp3.MediaType;
import okhttp3.RequestBody;
import okhttp3.internal.Util;
import okio.BufferedSink;
import okio.Okio;
import okio.Source;
public class InputStreamRequestBody extends RequestBody {
private InputStream inputStream;
private MediaType mediaType;
private long lenght;
public static RequestBody create(final MediaType mediaType, final InputStream inputStream, final long len) {
return new InputStreamRequestBody(inputStream, mediaType, len);
}
private InputStreamRequestBody(InputStream inputStream, MediaType mediaType, long len) {
this.inputStream = inputStream;
this.mediaType = mediaType;
this.lenght = len;
}
@Override
public MediaType contentType() {
return mediaType;
}
@Override
public long contentLength() {
return lenght;
}
@Override
public void writeTo(BufferedSink sink) throws IOException {
Source source = null;
try {
source = Okio.source(inputStream);
sink.writeAll(source);
} finally {
Util.closeQuietly(source);
}
}
}

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@ -0,0 +1,8 @@
package eu.dnetlib.dhp.common.api;
public class MissingConceptDoiException extends Throwable {
public MissingConceptDoiException(String message) {
super(message);
}
}

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@ -0,0 +1,264 @@
package eu.dnetlib.dhp.common.api;
import java.io.*;
import java.io.IOException;
import com.google.gson.Gson;
import eu.dnetlib.dhp.common.api.zenodo.ZenodoModel;
import eu.dnetlib.dhp.common.api.zenodo.ZenodoModelList;
import okhttp3.*;
public class ZenodoAPIClient implements Serializable {
String urlString;
String bucket;
String deposition_id;
String access_token;
public static final MediaType MEDIA_TYPE_JSON = MediaType.parse("application/json; charset=utf-8");
private static final MediaType MEDIA_TYPE_ZIP = MediaType.parse("application/zip");
public String getUrlString() {
return urlString;
}
public void setUrlString(String urlString) {
this.urlString = urlString;
}
public String getBucket() {
return bucket;
}
public void setBucket(String bucket) {
this.bucket = bucket;
}
public void setDeposition_id(String deposition_id) {
this.deposition_id = deposition_id;
}
public ZenodoAPIClient(String urlString, String access_token) throws IOException {
this.urlString = urlString;
this.access_token = access_token;
}
/**
* Brand new deposition in Zenodo. It sets the deposition_id and the bucket where to store the files to upload
* @return response code
* @throws IOException
*/
public int newDeposition() throws IOException {
String json = "{}";
OkHttpClient httpClient = new OkHttpClient();
RequestBody body = RequestBody.create(MEDIA_TYPE_JSON, json);
Request request = new Request.Builder()
.url(urlString)
.addHeader("Content-Type", "application/json") // add request headers
.addHeader("Authorization", "Bearer " + access_token)
.post(body)
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
// Get response body
json = response.body().string();
ZenodoModel newSubmission = new Gson().fromJson(json, ZenodoModel.class);
this.bucket = newSubmission.getLinks().getBucket();
this.deposition_id = newSubmission.getId();
return response.code();
}
}
/**
* Upload files in Zenodo.
* @param is the inputStream for the file to upload
* @param file_name the name of the file as it will appear on Zenodo
* @param len the size of the file
* @return the response code
*/
public int uploadIS(InputStream is, String file_name, long len) throws IOException {
OkHttpClient httpClient = new OkHttpClient();
Request request = new Request.Builder()
.url(bucket + "/" + file_name)
.addHeader("Content-Type", "application/zip") // add request headers
.addHeader("Authorization", "Bearer " + access_token)
.put(InputStreamRequestBody.create(MEDIA_TYPE_ZIP, is, len))
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
return response.code();
}
}
/**
* Associates metadata information to the current deposition
* @param metadata the metadata
* @return response code
* @throws IOException
*/
public int sendMretadata(String metadata) throws IOException {
OkHttpClient httpClient = new OkHttpClient();
RequestBody body = RequestBody.create(MEDIA_TYPE_JSON, metadata);
Request request = new Request.Builder()
.url(urlString + "/" + deposition_id)
.addHeader("Content-Type", "application/json") // add request headers
.addHeader("Authorization", "Bearer " + access_token)
.put(body)
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
return response.code();
}
}
/**
* To publish the current deposition. It works for both new deposition or new version of an old deposition
* @return response code
* @throws IOException
*/
public int publish() throws IOException {
String json = "{}";
OkHttpClient httpClient = new OkHttpClient();
Request request = new Request.Builder()
.url(urlString + "/" + deposition_id + "/actions/publish")
.addHeader("Authorization", "Bearer " + access_token)
.post(RequestBody.create(MEDIA_TYPE_JSON, json))
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
return response.code();
}
}
/**
* To create a new version of an already published deposition.
* It sets the deposition_id and the bucket to be used for the new version.
* @param concept_rec_id the concept record id of the deposition for which to create a new version. It is
* the last part of the url for the DOI Zenodo suggests to use to cite all versions:
* DOI: 10.xxx/zenodo.656930 concept_rec_id = 656930
* @return response code
* @throws IOException
* @throws MissingConceptDoiException
*/
public int newVersion(String concept_rec_id) throws IOException, MissingConceptDoiException {
setDepositionId(concept_rec_id);
String json = "{}";
OkHttpClient httpClient = new OkHttpClient();
Request request = new Request.Builder()
.url(urlString + "/" + deposition_id + "/actions/newversion")
.addHeader("Authorization", "Bearer " + access_token)
.post(RequestBody.create(MEDIA_TYPE_JSON, json))
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
ZenodoModel zenodoModel = new Gson().fromJson(response.body().string(), ZenodoModel.class);
String latest_draft = zenodoModel.getLinks().getLatest_draft();
deposition_id = latest_draft.substring(latest_draft.lastIndexOf("/") + 1);
bucket = getBucket(latest_draft);
return response.code();
}
}
private void setDepositionId(String concept_rec_id) throws IOException, MissingConceptDoiException {
ZenodoModelList zenodoModelList = new Gson().fromJson(getPrevDepositions(), ZenodoModelList.class);
for (ZenodoModel zm : zenodoModelList) {
if (zm.getConceptrecid().equals(concept_rec_id)) {
deposition_id = zm.getId();
return;
}
}
throw new MissingConceptDoiException("The concept record id specified was missing in the list of depositions");
}
private String getPrevDepositions() throws IOException {
OkHttpClient httpClient = new OkHttpClient();
Request request = new Request.Builder()
.url(urlString)
.addHeader("Content-Type", "application/json") // add request headers
.addHeader("Authorization", "Bearer " + access_token)
.get()
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
return response.body().string();
}
}
private String getBucket(String url) throws IOException {
OkHttpClient httpClient = new OkHttpClient();
Request request = new Request.Builder()
.url(url)
.addHeader("Content-Type", "application/json") // add request headers
.addHeader("Authorization", "Bearer " + access_token)
.get()
.build();
try (Response response = httpClient.newCall(request).execute()) {
if (!response.isSuccessful())
throw new IOException("Unexpected code " + response + response.body().string());
// Get response body
ZenodoModel zenodoModel = new Gson().fromJson(response.body().string(), ZenodoModel.class);
return zenodoModel.getLinks().getBucket();
}
}
}

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@ -0,0 +1,14 @@
package eu.dnetlib.dhp.common.api.zenodo;
public class Community {
private String identifier;
public String getIdentifier() {
return identifier;
}
public void setIdentifier(String identifier) {
this.identifier = identifier;
}
}

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@ -0,0 +1,47 @@
package eu.dnetlib.dhp.common.api.zenodo;
public class Creator {
private String affiliation;
private String name;
private String orcid;
public String getAffiliation() {
return affiliation;
}
public void setAffiliation(String affiliation) {
this.affiliation = affiliation;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getOrcid() {
return orcid;
}
public void setOrcid(String orcid) {
this.orcid = orcid;
}
public static Creator newInstance(String name, String affiliation, String orcid) {
Creator c = new Creator();
if (!(name == null)) {
c.name = name;
}
if (!(affiliation == null)) {
c.affiliation = affiliation;
}
if (!(orcid == null)) {
c.orcid = orcid;
}
return c;
}
}

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@ -0,0 +1,58 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
import net.minidev.json.annotate.JsonIgnore;
public class File implements Serializable {
private String checksum;
private String filename;
private long filesize;
private String id;
@JsonIgnore
// private Links links;
public String getChecksum() {
return checksum;
}
public void setChecksum(String checksum) {
this.checksum = checksum;
}
public String getFilename() {
return filename;
}
public void setFilename(String filename) {
this.filename = filename;
}
public long getFilesize() {
return filesize;
}
public void setFilesize(long filesize) {
this.filesize = filesize;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
// @JsonIgnore
// public Links getLinks() {
// return links;
// }
//
// @JsonIgnore
// public void setLinks(Links links) {
// this.links = links;
// }
}

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@ -0,0 +1,23 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
public class Grant implements Serializable {
private String id;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public static Grant newInstance(String id) {
Grant g = new Grant();
g.id = id;
return g;
}
}

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@ -0,0 +1,92 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
public class Links implements Serializable {
private String bucket;
private String discard;
private String edit;
private String files;
private String html;
private String latest_draft;
private String latest_draft_html;
private String publish;
private String self;
public String getBucket() {
return bucket;
}
public void setBucket(String bucket) {
this.bucket = bucket;
}
public String getDiscard() {
return discard;
}
public void setDiscard(String discard) {
this.discard = discard;
}
public String getEdit() {
return edit;
}
public void setEdit(String edit) {
this.edit = edit;
}
public String getFiles() {
return files;
}
public void setFiles(String files) {
this.files = files;
}
public String getHtml() {
return html;
}
public void setHtml(String html) {
this.html = html;
}
public String getLatest_draft() {
return latest_draft;
}
public void setLatest_draft(String latest_draft) {
this.latest_draft = latest_draft;
}
public String getLatest_draft_html() {
return latest_draft_html;
}
public void setLatest_draft_html(String latest_draft_html) {
this.latest_draft_html = latest_draft_html;
}
public String getPublish() {
return publish;
}
public void setPublish(String publish) {
this.publish = publish;
}
public String getSelf() {
return self;
}
public void setSelf(String self) {
this.self = self;
}
}

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@ -0,0 +1,153 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
import java.util.List;
public class Metadata implements Serializable {
private String access_right;
private List<Community> communities;
private List<Creator> creators;
private String description;
private String doi;
private List<Grant> grants;
private List<String> keywords;
private String language;
private String license;
private PrereserveDoi prereserve_doi;
private String publication_date;
private List<String> references;
private List<RelatedIdentifier> related_identifiers;
private String title;
private String upload_type;
private String version;
public String getUpload_type() {
return upload_type;
}
public void setUpload_type(String upload_type) {
this.upload_type = upload_type;
}
public String getVersion() {
return version;
}
public void setVersion(String version) {
this.version = version;
}
public String getAccess_right() {
return access_right;
}
public void setAccess_right(String access_right) {
this.access_right = access_right;
}
public List<Community> getCommunities() {
return communities;
}
public void setCommunities(List<Community> communities) {
this.communities = communities;
}
public List<Creator> getCreators() {
return creators;
}
public void setCreators(List<Creator> creators) {
this.creators = creators;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public String getDoi() {
return doi;
}
public void setDoi(String doi) {
this.doi = doi;
}
public List<Grant> getGrants() {
return grants;
}
public void setGrants(List<Grant> grants) {
this.grants = grants;
}
public List<String> getKeywords() {
return keywords;
}
public void setKeywords(List<String> keywords) {
this.keywords = keywords;
}
public String getLanguage() {
return language;
}
public void setLanguage(String language) {
this.language = language;
}
public String getLicense() {
return license;
}
public void setLicense(String license) {
this.license = license;
}
public PrereserveDoi getPrereserve_doi() {
return prereserve_doi;
}
public void setPrereserve_doi(PrereserveDoi prereserve_doi) {
this.prereserve_doi = prereserve_doi;
}
public String getPublication_date() {
return publication_date;
}
public void setPublication_date(String publication_date) {
this.publication_date = publication_date;
}
public List<String> getReferences() {
return references;
}
public void setReferences(List<String> references) {
this.references = references;
}
public List<RelatedIdentifier> getRelated_identifiers() {
return related_identifiers;
}
public void setRelated_identifiers(List<RelatedIdentifier> related_identifiers) {
this.related_identifiers = related_identifiers;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
}

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@ -0,0 +1,25 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
public class PrereserveDoi implements Serializable {
private String doi;
private String recid;
public String getDoi() {
return doi;
}
public void setDoi(String doi) {
this.doi = doi;
}
public String getRecid() {
return recid;
}
public void setRecid(String recid) {
this.recid = recid;
}
}

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@ -0,0 +1,43 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
public class RelatedIdentifier implements Serializable {
private String identifier;
private String relation;
private String resource_type;
private String scheme;
public String getIdentifier() {
return identifier;
}
public void setIdentifier(String identifier) {
this.identifier = identifier;
}
public String getRelation() {
return relation;
}
public void setRelation(String relation) {
this.relation = relation;
}
public String getResource_type() {
return resource_type;
}
public void setResource_type(String resource_type) {
this.resource_type = resource_type;
}
public String getScheme() {
return scheme;
}
public void setScheme(String scheme) {
this.scheme = scheme;
}
}

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@ -0,0 +1,118 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.io.Serializable;
import java.util.List;
public class ZenodoModel implements Serializable {
private String conceptrecid;
private String created;
private List<File> files;
private String id;
private Links links;
private Metadata metadata;
private String modified;
private String owner;
private String record_id;
private String state;
private boolean submitted;
private String title;
public String getConceptrecid() {
return conceptrecid;
}
public void setConceptrecid(String conceptrecid) {
this.conceptrecid = conceptrecid;
}
public String getCreated() {
return created;
}
public void setCreated(String created) {
this.created = created;
}
public List<File> getFiles() {
return files;
}
public void setFiles(List<File> files) {
this.files = files;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public Links getLinks() {
return links;
}
public void setLinks(Links links) {
this.links = links;
}
public Metadata getMetadata() {
return metadata;
}
public void setMetadata(Metadata metadata) {
this.metadata = metadata;
}
public String getModified() {
return modified;
}
public void setModified(String modified) {
this.modified = modified;
}
public String getOwner() {
return owner;
}
public void setOwner(String owner) {
this.owner = owner;
}
public String getRecord_id() {
return record_id;
}
public void setRecord_id(String record_id) {
this.record_id = record_id;
}
public String getState() {
return state;
}
public void setState(String state) {
this.state = state;
}
public boolean isSubmitted() {
return submitted;
}
public void setSubmitted(boolean submitted) {
this.submitted = submitted;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
}

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@ -0,0 +1,7 @@
package eu.dnetlib.dhp.common.api.zenodo;
import java.util.ArrayList;
public class ZenodoModelList extends ArrayList<ZenodoModel> {
}

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@ -1,5 +1,5 @@
package eu.dnetlib.dhp.oa.dedup;
package eu.dnetlib.dhp.oa.merge;
import java.text.Normalizer;
import java.util.*;

View File

@ -1,15 +1,22 @@
package eu.dnetlib.dhp.utils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import java.util.Map;
import javax.xml.ws.BindingProvider;
import org.apache.cxf.jaxws.JaxWsProxyFactoryBean;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import eu.dnetlib.enabling.is.lookup.rmi.ISLookUpService;
public class ISLookupClientFactory {
private static final Log log = LogFactory.getLog(ISLookupClientFactory.class);
private static final Logger log = LoggerFactory.getLogger(ISLookupClientFactory.class);
private static int requestTimeout = 60000 * 10;
private static int connectTimeout = 60000 * 10;
public static ISLookUpService getLookUpService(final String isLookupUrl) {
return getServiceStub(ISLookUpService.class, isLookupUrl);
@ -21,6 +28,25 @@ public class ISLookupClientFactory {
final JaxWsProxyFactoryBean jaxWsProxyFactory = new JaxWsProxyFactoryBean();
jaxWsProxyFactory.setServiceClass(clazz);
jaxWsProxyFactory.setAddress(endpoint);
return (T) jaxWsProxyFactory.create();
final T service = (T) jaxWsProxyFactory.create();
if (service instanceof BindingProvider) {
log
.info(
"setting timeouts for {} to requestTimeout: {}, connectTimeout: {}",
BindingProvider.class.getName(), requestTimeout, connectTimeout);
Map<String, Object> requestContext = ((BindingProvider) service).getRequestContext();
requestContext.put("com.sun.xml.internal.ws.request.timeout", requestTimeout);
requestContext.put("com.sun.xml.internal.ws.connect.timeout", connectTimeout);
requestContext.put("com.sun.xml.ws.request.timeout", requestTimeout);
requestContext.put("com.sun.xml.ws.connect.timeout", connectTimeout);
requestContext.put("javax.xml.ws.client.receiveTimeout", requestTimeout);
requestContext.put("javax.xml.ws.client.connectionTimeout", connectTimeout);
}
return service;
}
}

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@ -5,6 +5,8 @@ import java.text.ParseException;
import java.text.SimpleDateFormat;
import java.util.Date;
import org.apache.commons.lang3.StringUtils;
import net.sf.saxon.expr.XPathContext;
import net.sf.saxon.om.Sequence;
import net.sf.saxon.trans.XPathException;
@ -19,6 +21,8 @@ public class NormalizeDate extends AbstractExtensionFunction {
private static final String normalizeOutFormat = "yyyy-MM-dd'T'hh:mm:ss'Z'";
public static final String BLANK = "";
@Override
public String getName() {
return "normalizeDate";
@ -27,10 +31,10 @@ public class NormalizeDate extends AbstractExtensionFunction {
@Override
public Sequence doCall(XPathContext context, Sequence[] arguments) throws XPathException {
if (arguments == null | arguments.length == 0) {
return new StringValue("");
return new StringValue(BLANK);
}
String s = arguments[0].head().getStringValue();
return new StringValue(_year(s));
return new StringValue(_normalizeDate(s));
}
@Override
@ -55,8 +59,8 @@ public class NormalizeDate extends AbstractExtensionFunction {
return SequenceType.SINGLE_STRING;
}
private String _year(String s) {
final String date = s != null ? s.trim() : "";
private String _normalizeDate(String s) {
final String date = StringUtils.isNotBlank(s) ? s.trim() : BLANK;
for (String format : normalizeDateFormats) {
try {
@ -66,6 +70,6 @@ public class NormalizeDate extends AbstractExtensionFunction {
} catch (ParseException e) {
}
}
return "";
return BLANK;
}
}

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@ -0,0 +1,85 @@
package eu.dnetlib.dhp.common.api;
import java.io.File;
import java.io.FileInputStream;
import java.io.IOException;
import java.io.InputStream;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Disabled;
import org.junit.jupiter.api.Test;
@Disabled
public class ZenodoAPIClientTest {
private final String URL_STRING = "https://sandbox.zenodo.org/api/deposit/depositions";
private final String ACCESS_TOKEN = "";
private final String CONCEPT_REC_ID = "657113";
@Test
public void testNewDeposition() throws IOException {
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
ACCESS_TOKEN);
Assertions.assertEquals(201, client.newDeposition());
File file = new File(getClass()
.getResource("/eu/dnetlib/dhp/common/api/COVID-19.json.gz")
.getPath());
InputStream is = new FileInputStream(file);
Assertions.assertEquals(200, client.uploadIS(is, "COVID-19.json.gz", file.length()));
String metadata = IOUtils.toString(getClass().getResourceAsStream("/eu/dnetlib/dhp/common/api/metadata.json"));
Assertions.assertEquals(200, client.sendMretadata(metadata));
Assertions.assertEquals(202, client.publish());
}
@Test
public void testNewVersionNewName() throws IOException, MissingConceptDoiException {
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
ACCESS_TOKEN);
Assertions.assertEquals(201, client.newVersion(CONCEPT_REC_ID));
File file = new File(getClass()
.getResource("/eu/dnetlib/dhp/common/api/newVersion")
.getPath());
InputStream is = new FileInputStream(file);
Assertions.assertEquals(200, client.uploadIS(is, "newVersion_deposition", file.length()));
Assertions.assertEquals(202, client.publish());
}
@Test
public void testNewVersionOldName() throws IOException, MissingConceptDoiException {
ZenodoAPIClient client = new ZenodoAPIClient(URL_STRING,
ACCESS_TOKEN);
Assertions.assertEquals(201, client.newVersion(CONCEPT_REC_ID));
File file = new File(getClass()
.getResource("/eu/dnetlib/dhp/common/api/newVersion2")
.getPath());
InputStream is = new FileInputStream(file);
Assertions.assertEquals(200, client.uploadIS(is, "newVersion_deposition", file.length()));
Assertions.assertEquals(202, client.publish());
}
}

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@ -0,0 +1 @@
{"metadata":{"access_right":"open","communities":[{"identifier":"openaire-research-graph"}],"creators":[{"affiliation":"ISTI - CNR","name":"Bardi, Alessia","orcid":"0000-0002-1112-1292"},{"affiliation":"eifl", "name":"Kuchma, Iryna"},{"affiliation":"BIH", "name":"Brobov, Evgeny"},{"affiliation":"GIDIF RBM", "name":"Truccolo, Ivana"},{"affiliation":"unesp", "name":"Monteiro, Elizabete"},{"affiliation":"und", "name":"Casalegno, Carlotta"},{"affiliation":"CARL ABRC", "name":"Clary, Erin"},{"affiliation":"The University of Edimburgh", "name":"Romanowski, Andrew"},{"affiliation":"ISTI - CNR", "name":"Pavone, Gina"},{"affiliation":"ISTI - CNR", "name":"Artini, Michele"},{"affiliation":"ISTI - CNR","name":"Atzori, Claudio","orcid":"0000-0001-9613-6639"},{"affiliation":"University of Bielefeld","name":"Bäcker, Amelie","orcid":"0000-0001-6015-2063"},{"affiliation":"ISTI - CNR","name":"Baglioni, Miriam","orcid":"0000-0002-2273-9004"},{"affiliation":"University of Bielefeld","name":"Czerniak, Andreas","orcid":"0000-0003-3883-4169"},{"affiliation":"ISTI - CNR","name":"De Bonis, Michele"},{"affiliation":"Athena Research and Innovation Centre","name":"Dimitropoulos, Harry"},{"affiliation":"Athena Research and Innovation Centre","name":"Foufoulas, Ioannis"},{"affiliation":"University of Warsaw","name":"Horst, Marek"},{"affiliation":"Athena Research and Innovation Centre","name":"Iatropoulou, Katerina"},{"affiliation":"University of Warsaw","name":"Jacewicz, Przemyslaw"},{"affiliation":"Athena Research and Innovation Centre","name":"Kokogiannaki, Argiro", "orcid":"0000-0002-3880-0244"},{"affiliation":"ISTI - CNR","name":"La Bruzzo, Sandro","orcid":"0000-0003-2855-1245"},{"affiliation":"ISTI - CNR","name":"Lazzeri, Emma"},{"affiliation":"University of Bielefeld","name":"Löhden, Aenne"},{"affiliation":"ISTI - CNR","name":"Manghi, Paolo","orcid":"0000-0001-7291-3210"},{"affiliation":"ISTI - CNR","name":"Mannocci, Andrea","orcid":"0000-0002-5193-7851"},{"affiliation":"Athena Research and Innovation Center","name":"Manola, Natalia"},{"affiliation":"ISTI - CNR","name":"Ottonello, Enrico"},{"affiliation":"University of Bielefeld","name":"Shirrwagen, Jochen"}],"description":"\\u003cp\\u003eThis dump provides access to the metadata records of publications, research data, software and projects that may be relevant to the Corona Virus Disease (COVID-19) fight. The dump contains records of the OpenAIRE COVID-19 Gateway (https://covid-19.openaire.eu/), identified via full-text mining and inference techniques applied to the OpenAIRE Research Graph (https://explore.openaire.eu/). The Graph is one of the largest Open Access collections of metadata records and links between publications, datasets, software, projects, funders, and organizations, aggregating 12,000+ scientific data sources world-wide, among which the Covid-19 data sources Zenodo COVID-19 Community, WHO (World Health Organization), BIP! FInder for COVID-19, Protein Data Bank, Dimensions, scienceOpen, and RSNA. \\u003cp\\u003eThe dump consists of a gzip file containing one json per line. Each json is compliant to the schema available at https://doi.org/10.5281/zenodo.3974226\\u003c/p\\u003e ","title":"OpenAIRE Covid-19 publications, datasets, software and projects metadata.","upload_type":"dataset","version":"1.0"}}

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@ -0,0 +1 @@
This is a test for a new deposition

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@ -0,0 +1 @@
This is a test for a new version of an old deposition

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@ -0,0 +1,2 @@
This is a test for a new version of an old deposition. This should replace the other new version. I expect to have only two
files in the deposition

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@ -14,6 +14,37 @@
<description>This module contains common schema classes meant to be used across the dnet-hadoop submodules</description>
<build>
<plugins>
<plugin>
<groupId>net.alchim31.maven</groupId>
<artifactId>scala-maven-plugin</artifactId>
<version>4.0.1</version>
<executions>
<execution>
<id>scala-compile-first</id>
<phase>initialize</phase>
<goals>
<goal>add-source</goal>
<goal>compile</goal>
</goals>
</execution>
<execution>
<id>scala-test-compile</id>
<phase>process-test-resources</phase>
<goals>
<goal>testCompile</goal>
</goals>
</execution>
</executions>
<configuration>
<scalaVersion>${scala.version}</scalaVersion>
</configuration>
</plugin>
</plugins>
</build>
<dependencies>
<dependency>

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@ -1,14 +1,13 @@
package eu.dnetlib.dhp.schema.common;
import java.security.Key;
import eu.dnetlib.dhp.schema.oaf.DataInfo;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Qualifier;
public class ModelConstants {
public static final String DNET_SUBJECT_TYPOLOGIES = "dnet:subject_classification_typologies";
public static final String DNET_RESULT_TYPOLOGIES = "dnet:result_typologies";
public static final String DNET_PUBLICATION_RESOURCE = "dnet:publication_resource";
public static final String DNET_ACCESS_MODES = "dnet:access_modes";

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@ -79,6 +79,15 @@ public class ModelSupport {
entityIdPrefix.put("result", "50");
}
public static final Map<String, String> idPrefixEntity = Maps.newHashMap();
static {
idPrefixEntity.put("10", "datasource");
idPrefixEntity.put("20", "organization");
idPrefixEntity.put("40", "project");
idPrefixEntity.put("50", "result");
}
public static final Map<String, RelationInverse> relationInverseMap = Maps.newHashMap();
static {

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@ -0,0 +1,29 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
/**
* Used to refer to the Article Processing Charge information. Not dumped in this release. It contains two parameters: -
* currency of type String to store the currency of the APC - amount of type String to stores the charged amount
*/
public class APC implements Serializable {
private String currency;
private String amount;
public String getCurrency() {
return currency;
}
public void setCurrency(String currency) {
this.currency = currency;
}
public String getAmount() {
return amount;
}
public void setAmount(String amount) {
this.amount = amount;
}
}

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@ -0,0 +1,31 @@
package eu.dnetlib.dhp.schema.dump.oaf;
/**
* AccessRight. Used to represent the result access rights. It extends the eu.dnet.lib.dhp.schema.dump.oaf.Qualifier
* element with a parameter scheme of type String to store the scheme. Values for this element are found against the
* COAR access right scheme. The classid of the element accessright in eu.dnetlib.dhp.schema.oaf.Result is used to get
* the COAR corresponding code whose value will be used to set the code parameter. The COAR label corresponding to the
* COAR code will be used to set the label parameter. The scheme value will always be the one referring to the COAR
* access right scheme
*/
public class AccessRight extends Qualifier {
private String scheme;
public String getScheme() {
return scheme;
}
public void setScheme(String scheme) {
this.scheme = scheme;
}
public static AccessRight newInstance(String code, String label, String scheme) {
AccessRight ar = new AccessRight();
ar.setCode(code);
ar.setLabel(label);
ar.setScheme(scheme);
return ar;
}
}

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@ -0,0 +1,73 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import java.util.List;
/**
* Used to represent the generic author of the result. It has six parameters: - name of type String to store the given
* name of the author. The value for this parameter corresponds to eu.dnetlib.dhp.schema.oaf.Author name - surname of
* type String to store the family name of the author. The value for this parameter corresponds to
* eu.dnetlib.dhp.schema.oaf.Author surname - fullname of type String to store the fullname of the author. The value for
* this parameter corresponds to eu.dnetlib.dhp.schema.oaf.Author fullname - rank of type Integer to store the rank on
* the author in the result's authors list. The value for this parameter corresponds to eu.dnetlib.dhp.schema.oaf.Author
* rank - pid of type eu.dnetlib.dhp.schema.dump.oaf.Pid to store the persistent identifier for the author. For the
* moment only ORCID identifiers will be dumped. - The id element is instantiated by using the following values in the
* eu.dnetlib.dhp.schema.oaf.Result pid: * Qualifier.classid for scheme * value for value - The provenance element is
* instantiated only if the dataInfo is set for the pid in the result to be dumped. The provenance element is
* instantiated by using the following values in the eu.dnetlib.dhp.schema.oaf.Result pid: *
* dataInfo.provenanceaction.classname for provenance * dataInfo.trust for trust
*/
public class Author implements Serializable {
private String fullname;
private String name;
private String surname;
private Integer rank;
private Pid pid;
public String getFullname() {
return fullname;
}
public void setFullname(String fullname) {
this.fullname = fullname;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getSurname() {
return surname;
}
public void setSurname(String surname) {
this.surname = surname;
}
public Integer getRank() {
return rank;
}
public void setRank(Integer rank) {
this.rank = rank;
}
public Pid getPid() {
return pid;
}
public void setPid(Pid pid) {
this.pid = pid;
}
}

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@ -0,0 +1,136 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import java.util.Objects;
/**
* To store information about the conference or journal where the result has been presented or published. It contains
* eleven parameters: - name of type String to store the name of the journal or conference. It corresponds to the
* parameter name of eu.dnetlib.dhp.schema.oaf.Journal - issnPrinted ot type String to store the journal printed issn.
* It corresponds to the parameter issnPrinted of eu.dnetlib.dhp.schema.oaf.Journal - issnOnline of type String to store
* the journal online issn. It corresponds to the parameter issnOnline of eu.dnetlib.dhp.schema.oaf.Journal -
* issnLinking of type String to store the journal linking issn. It corresponds to the parameter issnLinking of
* eu.dnetlib.dhp.schema.oaf.Journal - ep of type String to store the end page. It corresponds to the parameter ep of
* eu.dnetlib.dhp.schema.oaf.Journal - iss of type String to store the journal issue. It corresponds to the parameter
* iss of eu.dnetlib.dhp.schema.oaf.Journal - sp of type String to store the start page. It corresponds to the parameter
* sp of eu.dnetlib.dhp.schema.oaf.Journal - vol of type String to store the Volume. It corresponds to the parameter vol
* of eu.dnetlib.dhp.schema.oaf.Journal - edition of type String to store the edition of the journal or conference
* proceeding. It corresponds to the parameter edition of eu.dnetlib.dhp.schema.oaf.Journal - conferenceplace of type
* String to store the place of the conference. It corresponds to the parameter conferenceplace of
* eu.dnetlib.dhp.schema.oaf.Journal - conferencedate of type String to store the date of the conference. It corresponds
* to the parameter conferencedate of eu.dnetlib.dhp.schema.oaf.Journal
*/
public class Container implements Serializable {
private String name;
private String issnPrinted;
private String issnOnline;
private String issnLinking;
private String ep;
private String iss;
private String sp;
private String vol;
private String edition;
private String conferenceplace;
private String conferencedate;
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getIssnPrinted() {
return issnPrinted;
}
public void setIssnPrinted(String issnPrinted) {
this.issnPrinted = issnPrinted;
}
public String getIssnOnline() {
return issnOnline;
}
public void setIssnOnline(String issnOnline) {
this.issnOnline = issnOnline;
}
public String getIssnLinking() {
return issnLinking;
}
public void setIssnLinking(String issnLinking) {
this.issnLinking = issnLinking;
}
public String getEp() {
return ep;
}
public void setEp(String ep) {
this.ep = ep;
}
public String getIss() {
return iss;
}
public void setIss(String iss) {
this.iss = iss;
}
public String getSp() {
return sp;
}
public void setSp(String sp) {
this.sp = sp;
}
public String getVol() {
return vol;
}
public void setVol(String vol) {
this.vol = vol;
}
public String getEdition() {
return edition;
}
public void setEdition(String edition) {
this.edition = edition;
}
public String getConferenceplace() {
return conferenceplace;
}
public void setConferenceplace(String conferenceplace) {
this.conferenceplace = conferenceplace;
}
public String getConferencedate() {
return conferencedate;
}
public void setConferencedate(String conferencedate) {
this.conferencedate = conferencedate;
}
}

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@ -0,0 +1,38 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
/**
* To represent the information described by a scheme and a value in that scheme (i.e. pid). It has two parameters: -
* scheme of type String to store the scheme - value of type String to store the value in that scheme
*/
public class ControlledField implements Serializable {
private String scheme;
private String value;
public String getScheme() {
return scheme;
}
public void setScheme(String scheme) {
this.scheme = scheme;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public static ControlledField newInstance(String scheme, String value) {
ControlledField cf = new ControlledField();
cf.setScheme(scheme);
cf.setValue(value);
return cf;
}
}

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@ -0,0 +1,37 @@
package eu.dnetlib.dhp.schema.dump.oaf;
/**
* Represents the country associated to this result. It extends eu.dnetlib.dhp.schema.dump.oaf.Qualifier with a
* provenance parameter of type eu.dnetlib.dhp.schema.dumo.oaf.Provenance. The country in not mapped if its value in the
* result reprensented in the internal format is Unknown. The value for this element correspond to: - code corresponds
* to the classid of eu.dnetlib.dhp.schema.oaf.Country - label corresponds to the classname of
* eu.dnetlib.dhp.schema.oaf.Country - provenance set only if the dataInfo associated to the Country of the result to be
* dumped is not null. In this case : - provenance corresponds to dataInfo.provenanceaction.classid (to be modified with
* datainfo.provenanceaction.classname) - trust corresponds to dataInfo.trust
*/
public class Country extends Qualifier {
private Provenance provenance;
public Provenance getProvenance() {
return provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
public static Country newInstance(String code, String label, Provenance provenance) {
Country c = new Country();
c.setProvenance(provenance);
c.setCode(code);
c.setLabel(label);
return c;
}
public static Country newInstance(String code, String label, String provenance, String trust) {
return newInstance(code, label, Provenance.newInstance(provenance, trust));
}
}

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@ -0,0 +1,36 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
public class Funder implements Serializable {
private String shortName;
private String name;
private String jurisdiction;
public String getJurisdiction() {
return jurisdiction;
}
public void setJurisdiction(String jurisdiction) {
this.jurisdiction = jurisdiction;
}
public String getShortName() {
return shortName;
}
public void setShortName(String shortName) {
this.shortName = shortName;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
}

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@ -0,0 +1,53 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
/**
* Represents the geolocation information. It has three parameters: - point of type String to store the point
* information. It corresponds to eu.dnetlib.dhp.schema.oaf.GeoLocation point - box ot type String to store the box
* information. It corresponds to eu.dnetlib.dhp.schema.oaf.GeoLocation box - place of type String to store the place
* information. It corresponds to eu.dnetlib.dhp.schema.oaf.GeoLocation place
*/
public class GeoLocation implements Serializable {
private String point;
private String box;
private String place;
public String getPoint() {
return point;
}
public void setPoint(String point) {
this.point = point;
}
public String getBox() {
return box;
}
public void setBox(String box) {
this.box = box;
}
public String getPlace() {
return place;
}
public void setPlace(String place) {
this.place = place;
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(point) && StringUtils.isBlank(box) && StringUtils.isBlank(place);
}
}

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@ -0,0 +1,107 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import java.util.List;
/**
* Represents the manifestations (i.e. different versions) of the result. For example: the pre-print and the published
* versions are two manifestations of the same research result. It has the following parameters: - license of type
* String to store the license applied to the instance. It corresponds to the value of the licence in the instance to be
* dumped - accessright of type eu.dnetlib.dhp.schema.dump.oaf.AccessRight to store the accessright of the instance. -
* type of type String to store the type of the instance as defined in the corresponding dnet vocabulary
* (dnet:pubication_resource). It corresponds to the instancetype.classname of the instance to be mapped - hostedby of
* type eu.dnetlib.dhp.schema.dump.oaf.KeyValue to store the information about the source from which the instance can be
* viewed or downloaded. It is mapped against the hostedby parameter of the instance to be dumped and - key corresponds
* to hostedby.key - value corresponds to hostedby.value - url of type List<String> list of locations where the instance
* is accessible. It corresponds to url of the instance to be dumped - collectedfrom of type
* eu.dnetlib.dhp.schema.dump.oaf.KeyValue to store the information about the source from which the instance has been
* collected. It is mapped against the collectedfrom parameter of the instance to be dumped and - key corresponds to
* collectedfrom.key - value corresponds to collectedfrom.value - publicationdate of type String to store the
* publication date of the instance ;// dateofacceptance; - refereed of type String to store information abour tthe
* review status of the instance. Possible values are 'Unknown', 'nonPeerReviewed', 'peerReviewed'. It corresponds to
* refereed.classname of the instance to be dumped
*/
public class Instance implements Serializable {
private String license;
private AccessRight accessright;
private String type;
private KeyValue hostedby;
private List<String> url;
private KeyValue collectedfrom;
private String publicationdate;// dateofacceptance;
private String refereed; // peer-review status
public String getLicense() {
return license;
}
public void setLicense(String license) {
this.license = license;
}
public AccessRight getAccessright() {
return accessright;
}
public void setAccessright(AccessRight accessright) {
this.accessright = accessright;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public KeyValue getHostedby() {
return hostedby;
}
public void setHostedby(KeyValue hostedby) {
this.hostedby = hostedby;
}
public List<String> getUrl() {
return url;
}
public void setUrl(List<String> url) {
this.url = url;
}
public KeyValue getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(KeyValue collectedfrom) {
this.collectedfrom = collectedfrom;
}
public String getPublicationdate() {
return publicationdate;
}
public void setPublicationdate(String publicationdate) {
this.publicationdate = publicationdate;
}
public String getRefereed() {
return refereed;
}
public void setRefereed(String refereed) {
this.refereed = refereed;
}
}

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@ -0,0 +1,48 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
/**
* To represent the information described by a key and a value. It has two parameters: - key to store the key (generally
* the OpenAIRE id for some entity) - value to store the value (generally the OpenAIRE name for the key)
*/
public class KeyValue implements Serializable {
private String key;
private String value;
public String getKey() {
return key;
}
public void setKey(String key) {
this.key = key;
}
public String getValue() {
return value;
}
public void setValue(String value) {
this.value = value;
}
public static KeyValue newInstance(String key, String value) {
KeyValue inst = new KeyValue();
inst.key = key;
inst.value = value;
return inst;
}
@JsonIgnore
public boolean isBlank() {
return StringUtils.isBlank(key) && StringUtils.isBlank(value);
}
}

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@ -0,0 +1,45 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
/**
* To represent the generic persistent identifier. It has two parameters: - id of type
* eu.dnetlib.dhp.schema.dump.oaf.ControlledField to store the scheme and value of the Persistent Identifier. -
* provenance of type eu.dnetlib.dhp.schema.dump.oaf.Provenance to store the provenance and trust of the information
*/
public class Pid implements Serializable {
private ControlledField id;
private Provenance provenance;
public ControlledField getId() {
return id;
}
public void setId(ControlledField pid) {
this.id = pid;
}
public Provenance getProvenance() {
return provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
public static Pid newInstance(ControlledField pid, Provenance provenance) {
Pid p = new Pid();
p.id = pid;
p.provenance = provenance;
return p;
}
public static Pid newInstance(ControlledField pid) {
Pid p = new Pid();
p.id = pid;
return p;
}
}

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@ -0,0 +1,45 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
public class Project implements Serializable {
protected String id;// OpenAIRE id
protected String code;
protected String acronym;
protected String title;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getAcronym() {
return acronym;
}
public void setAcronym(String acronym) {
this.acronym = acronym;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
}

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@ -0,0 +1,41 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
/**
* Indicates the process that produced (or provided) the information, and the trust associated to the information. It
* has two parameters: - provenance of type String to store the provenance of the information, - trust of type String to
* store the trust associated to the information
*/
public class Provenance implements Serializable {
private String provenance;
private String trust;
public String getProvenance() {
return provenance;
}
public void setProvenance(String provenance) {
this.provenance = provenance;
}
public String getTrust() {
return trust;
}
public void setTrust(String trust) {
this.trust = trust;
}
public static Provenance newInstance(String provenance, String trust) {
Provenance p = new Provenance();
p.provenance = provenance;
p.trust = trust;
return p;
}
public String toString() {
return provenance + trust;
}
}

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@ -0,0 +1,42 @@
package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import org.apache.commons.lang3.StringUtils;
import com.fasterxml.jackson.annotation.JsonIgnore;
/**
* To represent the information described by a code and a value It has two parameters: - code to store the code
* (generally the classid of the eu.dnetlib.dhp.schema.oaf.Qualifier element) - label to store the label (generally the
* classname of the eu.dnetlib.dhp.schema.oaf.Qualifier element
*/
public class Qualifier implements Serializable {
private String code; // the classid in the Qualifier
private String label; // the classname in the Qualifier
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getLabel() {
return label;
}
public void setLabel(String label) {
this.label = label;
}
public static Qualifier newInstance(String code, String value) {
Qualifier qualifier = new Qualifier();
qualifier.setCode(code);
qualifier.setLabel(value);
return qualifier;
}
}

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package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
import java.util.List;
import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
/**
* To represent the dumped result. It will be extended in the dump for Research Communities - Research
* Initiative/Infrastructures. It has the following parameters: - author of type
* List<eu.dnetlib.dhpschema.dump.oaf.Author> to describe the authors of a result. For each author in the result
* represented in the internal model one author in the esternal model is produced. - type of type String to represent
* the category of the result. Possible values are publication, dataset, software, other. It corresponds to
* resulttype.classname of the dumped result - language of type eu.dnetlib.dhp.schema.dump.oaf.Qualifier to store
* information about the language of the result. It is dumped as - code corresponds to language.classid - value
* corresponds to language.classname - country of type List<eu.dnetlib.dhp.schema.dump.oaf.Country> to store the country
* list to which the result is associated. For each country in the result respresented in the internal model one country
* in the external model is produces - subjects of type List<eu.dnetlib.dhp.dump.oaf.Subject> to store the subjects for
* the result. For each subject in the result represented in the internal model one subject in the external model is
* produced - maintitle of type String to store the main title of the result. It corresponds to the value of the first
* title in the resul to be dumped having classid equals to "main title" - subtitle of type String to store the subtitle
* of the result. It corresponds to the value of the first title in the resul to be dumped having classid equals to
* "subtitle" - description of type List<String> to store the description of the result. It corresponds to the list of
* description.value in the result represented in the internal model - publicationdate of type String to store the
* pubblication date. It corresponds to dateofacceptance.value in the result represented in the internal model -
* publisher of type String to store information about the publisher. It corresponds to publisher.value of the result
* represented in the intrenal model - embargoenddate of type String to store the embargo end date. It corresponds to
* embargoenddate.value of the result represented in the internal model - source of type List<String> See definition of
* Dublin Core field dc:source. It corresponds to the list of source.value in the result represented in the internal
* model - format of type List<String> It corresponds to the list of format.value in the result represented in the
* internal model - contributor of type List<String> to represent contributors for this result. It corresponds to the
* list of contributor.value in the result represented in the internal model - coverage of type String. It corresponds
* to the list of coverage.value in the result represented in the internal model - bestaccessright of type
* eu.dnetlib.dhp.schema.dump.oaf.AccessRight to store informatin about the openest access right associated to the
* manifestations of this research results. It corresponds to the same parameter in the result represented in the
* internal model - instance of type List<eu.dnetlib.dhp.schema.dump.oaf.Instance> to store all the instances associated
* to the result. It corresponds to the same parameter in the result represented in the internal model - container of
* type eu.dnetlib.dhp.schema/dump.oaf.Container (only for result of type publication). It corresponds to the parameter
* journal of the result represented in the internal model - documentationUrl of type List<String> (only for results of
* type software) to store the URLs to the software documentation. It corresponds to the list of documentationUrl.value
* of the result represented in the internal model - codeRepositoryUrl of type String (only for results of type
* software) to store the URL to the repository with the source code. It corresponds to codeRepositoryUrl.value of the
* result represented in the internal model - programmingLanguage of type String (only for results of type software) to
* store the programming language. It corresponds to programmingLanguaga.classid of the result represented in the
* internal model - contactperson of type List<String> (only for results of type other) to store the contact person for
* this result. It corresponds to the list of contactperson.value of the result represented in the internal model -
* contactgroup of type List<String> (only for results of type other) to store the information for the contact group. It
* corresponds to the list of contactgroup.value of the result represented in the internal model - tool of type
* List<String> (only fro results of type other) to store information about tool useful for the interpretation and/or
* re-used of the research product. It corresponds to the list of tool.value in the result represented in the internal
* modelt - size of type String (only for results of type dataset) to store the size of the dataset. It corresponds to
* size.value in the result represented in the internal model - version of type String (only for results of type
* dataset) to store the version. It corresponds to version.value of the result represented in the internal model -
* geolocation fo type List<eu.dnetlib.dhp.schema.dump.oaf.GeoLocation> (only for results of type dataset) to store
* geolocation information. For each geolocation element in the result represented in the internal model a GeoLocation
* in the external model il produced - id of type String to store the OpenAIRE id of the result. It corresponds to the
* id of the result represented in the internal model - originalId of type List<String> to store the original ids of the
* result. It corresponds to the originalId of the result represented in the internal model - pid of type
* List<eu.dnetlib.dhp.schema.dump.oaf.ControlledField> to store the persistent identifiers for the result. For each pid
* in the results represented in the internal model one pid in the external model is produced. The value correspondence
* is: - scheme corresponds to pid.qualifier.classid of the result represented in the internal model - value corresponds
* to the pid.value of the result represented in the internal model - dateofcollection of type String to store
* information about the time OpenAIRE collected the record. It corresponds to dateofcollection of the result
* represented in the internal model - lasteupdatetimestamp of type String to store the timestamp of the last update of
* the record. It corresponds to lastupdatetimestamp of the resord represented in the internal model
*/
public class Result implements Serializable {
private List<Author> author;
// resulttype allows subclassing results into publications | datasets | software
private String type; // resulttype
// common fields
private Qualifier language;
private List<Country> country;
private List<Subject> subjects;
private String maintitle;
private String subtitle;
private List<String> description;
private String publicationdate; // dateofacceptance;
private String publisher;
private String embargoenddate;
private List<String> source;
private List<String> format;
private List<String> contributor;
private List<String> coverage;
private AccessRight bestaccessright;
private List<Instance> instance;
private Container container;// Journal
private List<String> documentationUrl; // software
private String codeRepositoryUrl; // software
private String programmingLanguage; // software
private List<String> contactperson; // orp
private List<String> contactgroup; // orp
private List<String> tool; // orp
private String size; // dataset
private String version; // dataset
private List<GeoLocation> geolocation; // dataset
private String id;
private List<String> originalId;
private List<ControlledField> pid;
private String dateofcollection;
private Long lastupdatetimestamp;
public Long getLastupdatetimestamp() {
return lastupdatetimestamp;
}
public void setLastupdatetimestamp(Long lastupdatetimestamp) {
this.lastupdatetimestamp = lastupdatetimestamp;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public List<String> getOriginalId() {
return originalId;
}
public void setOriginalId(List<String> originalId) {
this.originalId = originalId;
}
public List<ControlledField> getPid() {
return pid;
}
public void setPid(List<ControlledField> pid) {
this.pid = pid;
}
public String getDateofcollection() {
return dateofcollection;
}
public void setDateofcollection(String dateofcollection) {
this.dateofcollection = dateofcollection;
}
public List<Author> getAuthor() {
return author;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public Container getContainer() {
return container;
}
public void setContainer(Container container) {
this.container = container;
}
public void setAuthor(List<Author> author) {
this.author = author;
}
public Qualifier getLanguage() {
return language;
}
public void setLanguage(Qualifier language) {
this.language = language;
}
public List<Country> getCountry() {
return country;
}
public void setCountry(List<Country> country) {
this.country = country;
}
public List<Subject> getSubjects() {
return subjects;
}
public void setSubjects(List<Subject> subjects) {
this.subjects = subjects;
}
public String getMaintitle() {
return maintitle;
}
public void setMaintitle(String maintitle) {
this.maintitle = maintitle;
}
public String getSubtitle() {
return subtitle;
}
public void setSubtitle(String subtitle) {
this.subtitle = subtitle;
}
public List<String> getDescription() {
return description;
}
public void setDescription(List<String> description) {
this.description = description;
}
public String getPublicationdate() {
return publicationdate;
}
public void setPublicationdate(String publicationdate) {
this.publicationdate = publicationdate;
}
public String getPublisher() {
return publisher;
}
public void setPublisher(String publisher) {
this.publisher = publisher;
}
public String getEmbargoenddate() {
return embargoenddate;
}
public void setEmbargoenddate(String embargoenddate) {
this.embargoenddate = embargoenddate;
}
public List<String> getSource() {
return source;
}
public void setSource(List<String> source) {
this.source = source;
}
public List<String> getFormat() {
return format;
}
public void setFormat(List<String> format) {
this.format = format;
}
public List<String> getContributor() {
return contributor;
}
public void setContributor(List<String> contributor) {
this.contributor = contributor;
}
public List<String> getCoverage() {
return coverage;
}
public void setCoverage(List<String> coverage) {
this.coverage = coverage;
}
public AccessRight getBestaccessright() {
return bestaccessright;
}
public void setBestaccessright(AccessRight bestaccessright) {
this.bestaccessright = bestaccessright;
}
public List<Instance> getInstance() {
return instance;
}
public void setInstance(List<Instance> instance) {
this.instance = instance;
}
public List<String> getDocumentationUrl() {
return documentationUrl;
}
public void setDocumentationUrl(List<String> documentationUrl) {
this.documentationUrl = documentationUrl;
}
public String getCodeRepositoryUrl() {
return codeRepositoryUrl;
}
public void setCodeRepositoryUrl(String codeRepositoryUrl) {
this.codeRepositoryUrl = codeRepositoryUrl;
}
public String getProgrammingLanguage() {
return programmingLanguage;
}
public void setProgrammingLanguage(String programmingLanguage) {
this.programmingLanguage = programmingLanguage;
}
public List<String> getContactperson() {
return contactperson;
}
public void setContactperson(List<String> contactperson) {
this.contactperson = contactperson;
}
public List<String> getContactgroup() {
return contactgroup;
}
public void setContactgroup(List<String> contactgroup) {
this.contactgroup = contactgroup;
}
public List<String> getTool() {
return tool;
}
public void setTool(List<String> tool) {
this.tool = tool;
}
public String getSize() {
return size;
}
public void setSize(String size) {
this.size = size;
}
public String getVersion() {
return version;
}
public void setVersion(String version) {
this.version = version;
}
public List<GeoLocation> getGeolocation() {
return geolocation;
}
public void setGeolocation(List<GeoLocation> geolocation) {
this.geolocation = geolocation;
}
}

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package eu.dnetlib.dhp.schema.dump.oaf;
import java.io.Serializable;
/**
* To represent keywords associated to the result. It has two parameters: - subject of type
* eu.dnetlib.dhp.schema.dump.oaf.ControlledField to describe the subject. It mapped as: - schema it corresponds to
* qualifier.classid of the dumped subject - value it corresponds to the subject value - provenance of type
* eu.dnetlib.dhp.schema.dump.oaf.Provenance to represent the provenance of the subject. It is dumped only if dataInfo
* is not null. In this case: - provenance corresponds to dataInfo.provenanceaction.classname - trust corresponds to
* dataInfo.trust
*/
public class Subject implements Serializable {
private ControlledField subject;
private Provenance provenance;
public ControlledField getSubject() {
return subject;
}
public void setSubject(ControlledField subject) {
this.subject = subject;
}
public Provenance getProvenance() {
return provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
}

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package eu.dnetlib.dhp.schema.dump.oaf.community;
import java.util.List;
import eu.dnetlib.dhp.schema.dump.oaf.KeyValue;
import eu.dnetlib.dhp.schema.dump.oaf.Result;
/**
* extends eu.dnetlib.dhp.schema.dump.oaf.Result with the following parameters: - projects of type
* List<eu.dnetlib.dhp.schema.dump.oaf.community.Project> to store the list of projects related to the result. The
* information is added after the result is mapped to the external model - context of type
* List<eu.dnetlib.dhp.schema/dump.oaf.community.Context> to store information about the RC RI related to the result.
* For each context in the result represented in the internal model one context in the external model is produced -
* collectedfrom of type List<eu.dnetliv.dhp.schema.dump.oaf.KeyValue> to store information about the sources from which
* the record has been collected. For each collectedfrom in the result represented in the internal model one
* collectedfrom in the external model is produced
*/
public class CommunityResult extends Result {
private List<Project> projects;
private List<Context> context;
protected List<KeyValue> collectedfrom;
public List<KeyValue> getCollectedfrom() {
return collectedfrom;
}
public void setCollectedfrom(List<KeyValue> collectedfrom) {
this.collectedfrom = collectedfrom;
}
public List<Project> getProjects() {
return projects;
}
public void setProjects(List<Project> projects) {
this.projects = projects;
}
public List<Context> getContext() {
return context;
}
public void setContext(List<Context> context) {
this.context = context;
}
}

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package eu.dnetlib.dhp.schema.dump.oaf.community;
import java.util.List;
import java.util.Objects;
import eu.dnetlib.dhp.schema.dump.oaf.Provenance;
import eu.dnetlib.dhp.schema.dump.oaf.Qualifier;
/**
* Reference to a relevant research infrastructure, initiative or community (RI/RC) among those collaborating with
* OpenAIRE. It extend eu.dnetlib.dhp.shema.dump.oaf.Qualifier with a parameter provenance of type
* List<eu.dnetlib.dhp.schema.dump.oaf.Provenance> to store the provenances of the association between the result and
* the RC/RI. The values for this element correspond to: - code: it corresponds to the id of the context in the result
* to be mapped. If the context id refers to a RC/RI and contains '::' only the part of the id before the first "::"
* will be used as value for code - label it corresponds to the label associated to the id. The information id taken
* from the profile of the RC/RI - provenance it is set only if the dataInfo associated to the contenxt element of the
* result to be dumped is not null. For each dataInfo one instance of type eu.dnetlib.dhp.schema.dump.oaf.Provenance is
* instantiated if the element datainfo.provenanceaction is not null. In this case - provenance corresponds to
* dataInfo.provenanceaction.classname - trust corresponds to dataInfo.trust
*/
public class Context extends Qualifier {
private List<Provenance> provenance;
public List<Provenance> getProvenance() {
return provenance;
}
public void setProvenance(List<Provenance> provenance) {
this.provenance = provenance;
}
@Override
public int hashCode() {
String provenance = new String();
this.provenance.forEach(p -> provenance.concat(p.toString()));
return Objects.hash(getCode(), getLabel(), provenance);
}
}

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package eu.dnetlib.dhp.schema.dump.oaf.community;
import java.io.Serializable;
/**
* To store information about the funder funding the project related to the result. It has the following parameters: -
* shortName of type String to store the funder short name (e.c. AKA). - name of type String to store the funder name
* (e.c. Akademy of Finland) - fundingStream of type String to store the funding stream - jurisdiction of type String to
* store the jurisdiction of the funder
*/
public class Funder implements Serializable {
private String shortName;
private String name;
private String fundingStream;
private String jurisdiction;
public String getJurisdiction() {
return jurisdiction;
}
public void setJurisdiction(String jurisdiction) {
this.jurisdiction = jurisdiction;
}
public String getShortName() {
return shortName;
}
public void setShortName(String shortName) {
this.shortName = shortName;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getFundingStream() {
return fundingStream;
}
public void setFundingStream(String fundingStream) {
this.fundingStream = fundingStream;
}
}

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package eu.dnetlib.dhp.schema.dump.oaf.community;
import java.io.Serializable;
import eu.dnetlib.dhp.schema.dump.oaf.Provenance;
/**
* To store information about the project related to the result. This information is not directly mapped from the result
* represented in the internal model because it is not there. The mapped result will be enriched with project
* information derived by relation between results and projects. Project class has the following parameters: - id of
* type String to store the OpenAIRE id for the Project - code of type String to store the grant agreement - acronym of
* type String to store the acronym for the project - title of type String to store the title of the project - funder of
* type eu.dnetlib.dhp.schema.dump.oaf.community.Funder to store information about the funder funding the project -
* provenance of type eu.dnetlib.dhp.schema.dump.oaf.Provenance to store information about the. provenance of the
* association between the result and the project
*/
public class Project implements Serializable {
private String id;// OpenAIRE id
private String code;
private String acronym;
private String title;
private Funder funder;
private Provenance provenance;
public Provenance getProvenance() {
return provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getAcronym() {
return acronym;
}
public void setAcronym(String acronym) {
this.acronym = acronym;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public Funder getFunder() {
return funder;
}
public void setFunder(Funder funders) {
this.funder = funders;
}
public static Project newInstance(String id, String code, String acronym, String title, Funder funder) {
Project project = new Project();
project.setAcronym(acronym);
project.setCode(code);
project.setFunder(funder);
project.setId(id);
project.setTitle(title);
return project;
}
}

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package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
public class Constants implements Serializable {
// collectedFrom va con isProvidedBy -> becco da ModelSupport
public static final String HOSTED_BY = "isHostedBy";
public static final String HOSTS = "hosts";
// community result uso isrelatedto
public static final String RESULT_ENTITY = "result";
public static final String DATASOURCE_ENTITY = "datasource";
public static final String CONTEXT_ENTITY = "context";
public static final String CONTEXT_ID = "60";
public static final String CONTEXT_NS_PREFIX = "context____";
}

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package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
import java.util.List;
import eu.dnetlib.dhp.schema.dump.oaf.Container;
import eu.dnetlib.dhp.schema.dump.oaf.ControlledField;
import eu.dnetlib.dhp.schema.dump.oaf.KeyValue;
/**
* To store information about the datasource OpenAIRE collects information from. It contains the following parameters: -
* id of type String to store the OpenAIRE id for the datasource. It corresponds to the parameter id of the datasource
* represented in the internal model - originalId of type List<String> to store the list of original ids associated to
* the datasource. It corresponds to the parameter originalId of the datasource represented in the internal model. The
* null values are filtered out - pid of type List<eu.dnetlib.shp.schema.dump.oaf.ControlledField> to store the
* persistent identifiers for the datasource. For each pid in the datasource represented in the internal model one pid
* in the external model is produced as : - schema corresponds to pid.qualifier.classid of the datasource represented in
* the internal model - value corresponds to pid.value of the datasource represented in the internal model -
* datasourceType of type eu.dnetlib.dhp.schema.dump.oaf.ControlledField to store the datasource type (e.g.
* pubsrepository::institutional, Institutional Repository) as in the dnet vocabulary dnet:datasource_typologies. It
* corresponds to datasourcetype of the datasource represented in the internal model and : - code corresponds to
* datasourcetype.classid - value corresponds to datasourcetype.classname - openairecompatibility of type String to
* store information about the OpenAIRE compatibility of the ingested results (which guidelines they are compliant to).
* It corresponds to openairecompatibility.classname of the datasource represented in the internal model - officialname
* of type Sgtring to store the official name of the datasource. It correspond to officialname.value of the datasource
* represented in the internal model - englishname of type String to store the English name of the datasource. It
* corresponds to englishname.value of the datasource represented in the internal model - websiteurl of type String to
* store the URL of the website of the datasource. It corresponds to websiteurl.value of the datasource represented in
* the internal model - logourl of type String to store the URL of the logo for the datasource. It corresponds to
* logourl.value of the datasource represented in the internal model - dateofvalidation of type String to store the data
* of validation against the guidelines for the datasource records. It corresponds to dateofvalidation.value of the
* datasource represented in the internal model - description of type String to store the description for the
* datasource. It corresponds to description.value of the datasource represented in the internal model
*/
public class Datasource implements Serializable {
private String id; // string
private List<String> originalId; // list string
private List<ControlledField> pid; // list<String>
private ControlledField datasourcetype; // value
private String openairecompatibility; // value
private String officialname; // string
private String englishname; // string
private String websiteurl; // string
private String logourl; // string
private String dateofvalidation; // string
private String description; // description
private List<String> subjects; // List<String>
// opendoar specific fields (od*)
private List<String> languages; // odlanguages List<String>
private List<String> contenttypes; // odcontent types List<String>
// re3data fields
private String releasestartdate; // string
private String releaseenddate; // string
private String missionstatementurl; // string
// {open, restricted or closed}
private String accessrights; // databaseaccesstype string
// {open, restricted or closed}
private String uploadrights; // datauploadtype string
// {feeRequired, registration, other}
private String databaseaccessrestriction; // string
// {feeRequired, registration, other}
private String datauploadrestriction; // string
private Boolean versioning; // boolean
private String citationguidelineurl; // string
// {yes, no, uknown}
private String pidsystems; // string
private String certificates; // string
private List<Object> policies; //
private Container journal; // issn etc del Journal
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public List<String> getOriginalId() {
return originalId;
}
public void setOriginalId(List<String> originalId) {
this.originalId = originalId;
}
public List<ControlledField> getPid() {
return pid;
}
public void setPid(List<ControlledField> pid) {
this.pid = pid;
}
public ControlledField getDatasourcetype() {
return datasourcetype;
}
public void setDatasourcetype(ControlledField datasourcetype) {
this.datasourcetype = datasourcetype;
}
public String getOpenairecompatibility() {
return openairecompatibility;
}
public void setOpenairecompatibility(String openairecompatibility) {
this.openairecompatibility = openairecompatibility;
}
public String getOfficialname() {
return officialname;
}
public void setOfficialname(String officialname) {
this.officialname = officialname;
}
public String getEnglishname() {
return englishname;
}
public void setEnglishname(String englishname) {
this.englishname = englishname;
}
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public String getLogourl() {
return logourl;
}
public void setLogourl(String logourl) {
this.logourl = logourl;
}
public String getDateofvalidation() {
return dateofvalidation;
}
public void setDateofvalidation(String dateofvalidation) {
this.dateofvalidation = dateofvalidation;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public List<String> getSubjects() {
return subjects;
}
public void setSubjects(List<String> subjects) {
this.subjects = subjects;
}
public List<String> getLanguages() {
return languages;
}
public void setLanguages(List<String> languages) {
this.languages = languages;
}
public List<String> getContenttypes() {
return contenttypes;
}
public void setContenttypes(List<String> contenttypes) {
this.contenttypes = contenttypes;
}
public String getReleasestartdate() {
return releasestartdate;
}
public void setReleasestartdate(String releasestartdate) {
this.releasestartdate = releasestartdate;
}
public String getReleaseenddate() {
return releaseenddate;
}
public void setReleaseenddate(String releaseenddate) {
this.releaseenddate = releaseenddate;
}
public String getMissionstatementurl() {
return missionstatementurl;
}
public void setMissionstatementurl(String missionstatementurl) {
this.missionstatementurl = missionstatementurl;
}
public String getAccessrights() {
return accessrights;
}
public void setAccessrights(String accessrights) {
this.accessrights = accessrights;
}
public String getUploadrights() {
return uploadrights;
}
public void setUploadrights(String uploadrights) {
this.uploadrights = uploadrights;
}
public String getDatabaseaccessrestriction() {
return databaseaccessrestriction;
}
public void setDatabaseaccessrestriction(String databaseaccessrestriction) {
this.databaseaccessrestriction = databaseaccessrestriction;
}
public String getDatauploadrestriction() {
return datauploadrestriction;
}
public void setDatauploadrestriction(String datauploadrestriction) {
this.datauploadrestriction = datauploadrestriction;
}
public Boolean getVersioning() {
return versioning;
}
public void setVersioning(Boolean versioning) {
this.versioning = versioning;
}
public String getCitationguidelineurl() {
return citationguidelineurl;
}
public void setCitationguidelineurl(String citationguidelineurl) {
this.citationguidelineurl = citationguidelineurl;
}
public String getPidsystems() {
return pidsystems;
}
public void setPidsystems(String pidsystems) {
this.pidsystems = pidsystems;
}
public String getCertificates() {
return certificates;
}
public void setCertificates(String certificates) {
this.certificates = certificates;
}
public List<Object> getPolicies() {
return policies;
}
public void setPolicies(List<Object> policiesr3) {
this.policies = policiesr3;
}
public Container getJournal() {
return journal;
}
public void setJournal(Container journal) {
this.journal = journal;
}
}

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@ -0,0 +1,54 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To store information about the funder funding the project related to the result. It has the following parameters:
* - private String shortName to store the short name of the funder (e.g. AKA)
* - private String name to store information about the name of the funder (e.g. Akademy of Finland)
* - private Fundings funding_stream to store the fundingstream
* - private String jurisdiction to store information about the jurisdiction of the funder
*/
public class Funder implements Serializable {
private String shortName;
private String name;
private Fundings funding_stream;
private String jurisdiction;
public String getShortName() {
return shortName;
}
public void setShortName(String shortName) {
this.shortName = shortName;
}
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getJurisdiction() {
return jurisdiction;
}
public void setJurisdiction(String jurisdiction) {
this.jurisdiction = jurisdiction;
}
public Fundings getFunding_stream() {
return funding_stream;
}
public void setFunding_stream(Fundings funding_stream) {
this.funding_stream = funding_stream;
}
}

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@ -0,0 +1,35 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To store inforamtion about the funding stream. It has two parameters:
* - private String id to store the id of the fundings stream. The id is created by appending the shortname of the
* funder to the name of each level in the xml representing the fundng stream. For example: if the funder is the
* European Commission, the funding level 0 name is FP7, the funding level 1 name is SP3 and the funding level 2 name is
* PEOPLE then the id will be: EC::FP7::SP3::PEOPLE
* - private String description to describe the funding stream. It is created by concatenating the description of each funding
* level so for the example above the description would be: SEVENTH FRAMEWORK PROGRAMME - SP3-People - Marie-Curie Actions
*/
public class Fundings implements Serializable {
private String id;
private String description;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
}

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@ -0,0 +1,56 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
import java.util.Optional;
/**
* To describe the funded amount. It has the following parameters:
* - private String currency to store the currency of the fund
* - private float totalcost to store the total cost of the project
* - private float fundedamount to store the funded amount by the funder
*/
public class Granted implements Serializable {
private String currency;
private float totalcost;
private float fundedamount;
public String getCurrency() {
return currency;
}
public void setCurrency(String currency) {
this.currency = currency;
}
public float getTotalcost() {
return totalcost;
}
public void setTotalcost(float totalcost) {
this.totalcost = totalcost;
}
public float getFundedamount() {
return fundedamount;
}
public void setFundedamount(float fundedamount) {
this.fundedamount = fundedamount;
}
public static Granted newInstance(String currency, float totalcost, float fundedamount) {
Granted granted = new Granted();
granted.currency = currency;
granted.totalcost = totalcost;
granted.fundedamount = fundedamount;
return granted;
}
public static Granted newInstance(String currency, float fundedamount) {
Granted granted = new Granted();
granted.currency = currency;
granted.fundedamount = fundedamount;
return granted;
}
}

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@ -0,0 +1,82 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To store information about the classification for the project. The classification depends on the programme. For example
* H2020-EU.3.4.5.3 can be classified as
* H2020-EU.3. => Societal Challenges (level1)
* H2020-EU.3.4. => Transport (level2)
* H2020-EU.3.4.5. => CLEANSKY2 (level3)
* H2020-EU.3.4.5.3. => IADP Fast Rotorcraft (level4)
*
* We decided to explicitly represent up to three levels in the classification.
*
* H2020Classification has the following parameters:
* - private Programme programme to store the information about the programme related to this classification
* - private String level1 to store the information about the level 1 of the classification (Priority or Pillar of the EC)
* - private String level2 to store the information about the level2 af the classification (Objectives (?))
* - private String level3 to store the information about the level3 of the classification
* - private String classification to store the entire classification related to the programme
*/
public class H2020Classification implements Serializable {
private Programme programme;
private String level1;
private String level2;
private String level3;
private String classification;
public Programme getProgramme() {
return programme;
}
public void setProgramme(Programme programme) {
this.programme = programme;
}
public String getLevel1() {
return level1;
}
public void setLevel1(String level1) {
this.level1 = level1;
}
public String getLevel2() {
return level2;
}
public void setLevel2(String level2) {
this.level2 = level2;
}
public String getLevel3() {
return level3;
}
public void setLevel3(String level3) {
this.level3 = level3;
}
public String getClassification() {
return classification;
}
public void setClassification(String classification) {
this.classification = classification;
}
public static H2020Classification newInstance(String programme_code, String programme_description, String level1,
String level2, String level3, String classification) {
H2020Classification h2020classification = new H2020Classification();
h2020classification.programme = Programme.newInstance(programme_code, programme_description);
h2020classification.level1 = level1;
h2020classification.level2 = level2;
h2020classification.level3 = level3;
h2020classification.classification = classification;
return h2020classification;
}
}

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@ -0,0 +1,41 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To represent the generic node in a relation. It has the following parameters:
* - private String id the openaire id of the entity in the relation
* - private String type the type of the entity in the relation.
*
* Consider the generic relation between a Result R and a Project P, the node representing R will have
* as id the id of R and as type result, while the node representing the project will have as id the id of the project
* and as type project
*/
public class Node implements Serializable {
private String id;
private String type;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public static Node newInstance(String id, String type) {
Node node = new Node();
node.id = id;
node.type = type;
return node;
}
}

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@ -0,0 +1,88 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
import java.util.List;
import eu.dnetlib.dhp.schema.dump.oaf.ControlledField;
import eu.dnetlib.dhp.schema.dump.oaf.Country;
import eu.dnetlib.dhp.schema.dump.oaf.KeyValue;
import eu.dnetlib.dhp.schema.dump.oaf.Qualifier;
import eu.dnetlib.dhp.schema.dump.oaf.community.Project;
/**
* To represent the generic organizaiton. It has the following parameters:
* - private String legalshortname to store the legalshortname of the organizaiton
* - private String legalname to store the legal name of the organization
* - private String websiteurl to store the websiteurl of the organization
* - private List<String> alternativenames to store the alternative names of the organization
* - private Qualifier country to store the country of the organization
* - private String id to store the id of the organization
* - private List<ControlledField> pid to store the list of pids for the organization
*/
public class Organization implements Serializable {
private String legalshortname;
private String legalname;
private String websiteurl;
private List<String> alternativenames;
private Qualifier country;
private String id;
private List<ControlledField> pid;
public String getLegalshortname() {
return legalshortname;
}
public void setLegalshortname(String legalshortname) {
this.legalshortname = legalshortname;
}
public String getLegalname() {
return legalname;
}
public void setLegalname(String legalname) {
this.legalname = legalname;
}
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public List<String> getAlternativenames() {
return alternativenames;
}
public void setAlternativenames(List<String> alternativenames) {
this.alternativenames = alternativenames;
}
public Qualifier getCountry() {
return country;
}
public void setCountry(Qualifier country) {
this.country = country;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public List<ControlledField> getPid() {
return pid;
}
public void setPid(List<ControlledField> pid) {
this.pid = pid;
}
}

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@ -0,0 +1,37 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To store information about the ec programme for the project. It has the following parameters:
* - private String code to store the code of the programme
* - private String description to store the description of the programme
*/
public class Programme implements Serializable {
private String code;
private String description;
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
public static Programme newInstance(String code, String description) {
Programme p = new Programme();
p.code = code;
p.description = description;
return p;
}
}

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@ -0,0 +1,192 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
import java.util.List;
/**
* This is the class representing the Project in the model used for the dumps of the whole graph. At the moment the dump
* of the Projects differs from the other dumps because we do not create relations between Funders (Organization) and
* Projects but we put the information about the Funder within the Project representation. We also removed the
* collected from element from the Project. No relation between the Project and the Datasource entity from which it is
* collected will be created. We will never create relations between Project and Datasource. In case some relation will
* be extracted from the Project they will refer the Funder and will be of type ( organization -> funds -> project,
* project -> isFundedBy -> organization) We also removed the duration parameter because the most of times it is set to
* 0. It has the following parameters:
* - private String id to store the id of the project (OpenAIRE id)
* - private String websiteurl to store the websiteurl of the project
* - private String code to store the grant agreement of the project
* - private String acronym to store the acronym of the project
* - private String title to store the tile of the project
* - private String startdate to store the start date
* - private String enddate to store the end date
* - private String callidentifier to store the call indentifier
* - private String keywords to store the keywords
* - private boolean openaccessmandateforpublications to store if the project must accomplish to the open access mandate
* for publications. This value will be set to true if one of the field in the project represented in the internal model
* is set to true
* - private boolean openaccessmandatefordataset to store if the project must accomplish to the open access mandate for
* dataset. It is set to the value in the corresponding filed of the project represented in the internal model
* - private List<String> subject to store the list of subjects of the project
* - private List<Funder> funding to store the list of funder of the project
* - private String summary to store the summary of the project
* - private Granted granted to store the granted amount
* - private List<H2020Classification> h2020classification to store the list of H2020 classifications the project is related to
*/
public class Project implements Serializable {
private String id;
private String websiteurl;
private String code;
private String acronym;
private String title;
private String startdate;
private String enddate;
private String callidentifier;
private String keywords;
private boolean openaccessmandateforpublications;
private boolean openaccessmandatefordataset;
private List<String> subject;
private List<Funder> funding;
private String summary;
private Granted granted;
private List<H2020Classification> h2020Classifications;
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getWebsiteurl() {
return websiteurl;
}
public void setWebsiteurl(String websiteurl) {
this.websiteurl = websiteurl;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getAcronym() {
return acronym;
}
public void setAcronym(String acronym) {
this.acronym = acronym;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getStartdate() {
return startdate;
}
public void setStartdate(String startdate) {
this.startdate = startdate;
}
public String getEnddate() {
return enddate;
}
public void setEnddate(String enddate) {
this.enddate = enddate;
}
public String getCallidentifier() {
return callidentifier;
}
public void setCallidentifier(String callidentifier) {
this.callidentifier = callidentifier;
}
public String getKeywords() {
return keywords;
}
public void setKeywords(String keywords) {
this.keywords = keywords;
}
public boolean isOpenaccessmandateforpublications() {
return openaccessmandateforpublications;
}
public void setOpenaccessmandateforpublications(boolean openaccessmandateforpublications) {
this.openaccessmandateforpublications = openaccessmandateforpublications;
}
public boolean isOpenaccessmandatefordataset() {
return openaccessmandatefordataset;
}
public void setOpenaccessmandatefordataset(boolean openaccessmandatefordataset) {
this.openaccessmandatefordataset = openaccessmandatefordataset;
}
public List<String> getSubject() {
return subject;
}
public void setSubject(List<String> subject) {
this.subject = subject;
}
public List<Funder> getFunding() {
return funding;
}
public void setFunding(List<Funder> funding) {
this.funding = funding;
}
public String getSummary() {
return summary;
}
public void setSummary(String summary) {
this.summary = summary;
}
public Granted getGranted() {
return granted;
}
public void setGranted(Granted granted) {
this.granted = granted;
}
public List<H2020Classification> getH2020Classifications() {
return h2020Classifications;
}
public void setH2020Classifications(List<H2020Classification> h2020Classifications) {
this.h2020Classifications = h2020Classifications;
}
}

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@ -0,0 +1,40 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To represent the semantics of the generic relation between two entities. It has the following parameters:
* - private String name to store the semantics of the relation (i.e. isAuthorInstitutionOf). It corresponds to the
* relclass parameter in the relation represented in the internal model
* represented in the internal model
* - private String type to store the type of the relation (i.e. affiliation). It corresponds to the subreltype parameter
* of the relation represented in theinternal model
*/
public class RelType implements Serializable {
private String name; // relclass
private String type; // subreltype
public String getName() {
return name;
}
public void setName(String name) {
this.name = name;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public static RelType newInstance(String name, String type) {
RelType rel = new RelType();
rel.name = name;
rel.type = type;
return rel;
}
}

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@ -0,0 +1,68 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
import java.util.Objects;
import eu.dnetlib.dhp.schema.dump.oaf.Provenance;
/**
* To represent the gereric relation between two entities. It has the following parameters:
* - private Node source to represent the entity source of the relation
* - private Node target to represent the entity target of the relation
* - private RelType reltype to represent the semantics of the relation
* - private Provenance provenance to represent the provenance of the relation
*/
public class Relation implements Serializable {
private Node source;
private Node target;
private RelType reltype;
private Provenance provenance;
public Node getSource() {
return source;
}
public void setSource(Node source) {
this.source = source;
}
public Node getTarget() {
return target;
}
public void setTarget(Node target) {
this.target = target;
}
public RelType getReltype() {
return reltype;
}
public void setReltype(RelType reltype) {
this.reltype = reltype;
}
public Provenance getProvenance() {
return provenance;
}
public void setProvenance(Provenance provenance) {
this.provenance = provenance;
}
@Override
public int hashCode() {
return Objects.hash(source.getId(), target.getId(), reltype.getType() + ":" + reltype.getName());
}
public static Relation newInstance(Node source, Node target, RelType reltype, Provenance provenance) {
Relation relation = new Relation();
relation.source = source;
relation.target = target;
relation.reltype = reltype;
relation.provenance = provenance;
return relation;
}
}

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@ -0,0 +1,20 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.util.List;
/**
* To represent RC entities. It extends eu.dnetlib.dhp.dump.oaf.grap.ResearchInitiative by adding the parameter subject
* to store the list of subjects related to the community
*/
public class ResearchCommunity extends ResearchInitiative {
private List<String> subject;
public List<String> getSubject() {
return subject;
}
public void setSubject(List<String> subject) {
this.subject = subject;
}
}

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@ -0,0 +1,71 @@
package eu.dnetlib.dhp.schema.dump.oaf.graph;
import java.io.Serializable;
/**
* To represent entity of type RC/RI. It has the following parameters, which are mostly derived by the profile
* - private String id to store the openaire id for the entity. Is has as code 00 and will be created as
* 00|context_____::md5(originalId)
* private String originalId to store the id of the context as provided in the profile (i.e. mes)
* private String name to store the name of the context (got from the label attribute in the context definition)
* private String type to store the type of the context (i.e.: research initiative or research community)
* private String description to store the description of the context as given in the profile
* private String zenodo_community to store the zenodo community associated to the context (main zenodo community)
*/
public class ResearchInitiative implements Serializable {
private String id; // openaireId
private String originalId; // context id
private String name; // context name
private String type; // context type: research initiative or research community
private String description;
private String zenodo_community;
public String getZenodo_community() {
return zenodo_community;
}
public void setZenodo_community(String zenodo_community) {
this.zenodo_community = zenodo_community;
}
public String getType() {
return type;
}
public void setType(String type) {
this.type = type;
}
public String getId() {
return id;
}
public void setId(String id) {
this.id = id;
}
public String getName() {
return name;
}
public void setName(String label) {
this.name = label;
}
public String getOriginalId() {
return originalId;
}
public void setOriginalId(String originalId) {
this.originalId = originalId;
}
public String getDescription() {
return description;
}
public void setDescription(String description) {
this.description = description;
}
}

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@ -0,0 +1,88 @@
package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
/**
* To store information about the classification for the project. The classification depends on the programme. For example
* H2020-EU.3.4.5.3 can be classified as
* H2020-EU.3. => Societal Challenges (level1)
* H2020-EU.3.4. => Transport (level2)
* H2020-EU.3.4.5. => CLEANSKY2 (level3)
* H2020-EU.3.4.5.3. => IADP Fast Rotorcraft (level4)
*
* We decided to explicitly represent up to three levels in the classification.
*
* H2020Classification has the following parameters:
* - private Programme programme to store the information about the programme related to this classification
* - private String level1 to store the information about the level 1 of the classification (Priority or Pillar of the EC)
* - private String level2 to store the information about the level2 af the classification (Objectives (?))
* - private String level3 to store the information about the level3 of the classification
* - private String classification to store the entire classification related to the programme
*/
public class H2020Classification implements Serializable {
private H2020Programme h2020Programme;
private String level1;
private String level2;
private String level3;
private String classification;
public H2020Programme getH2020Programme() {
return h2020Programme;
}
public void setH2020Programme(H2020Programme h2020Programme) {
this.h2020Programme = h2020Programme;
}
public String getLevel1() {
return level1;
}
public void setLevel1(String level1) {
this.level1 = level1;
}
public String getLevel2() {
return level2;
}
public void setLevel2(String level2) {
this.level2 = level2;
}
public String getLevel3() {
return level3;
}
public void setLevel3(String level3) {
this.level3 = level3;
}
public String getClassification() {
return classification;
}
public void setClassification(String classification) {
this.classification = classification;
}
@Override
public boolean equals(Object o) {
if (this == o)
return true;
if (o == null || getClass() != o.getClass())
return false;
H2020Classification h2020classification = (H2020Classification) o;
return Objects.equals(level1, h2020classification.level1) &&
Objects.equals(level2, h2020classification.level2) &&
Objects.equals(level3, h2020classification.level3) &&
Objects.equals(classification, h2020classification.classification) &&
h2020Programme.equals(h2020classification.h2020Programme);
}
}

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@ -4,7 +4,13 @@ package eu.dnetlib.dhp.schema.oaf;
import java.io.Serializable;
import java.util.Objects;
public class Programme implements Serializable {
/**
* To store information about the ec programme for the project. It has the following parameters:
* - private String code to store the code of the programme
* - private String description to store the description of the programme
*/
public class H2020Programme implements Serializable {
private String code;
private String description;
@ -31,8 +37,8 @@ public class Programme implements Serializable {
if (o == null || getClass() != o.getClass())
return false;
Programme programme = (Programme) o;
return Objects.equals(code, programme.code);
H2020Programme h2020Programme = (H2020Programme) o;
return Objects.equals(code, h2020Programme.code);
}
}

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@ -58,7 +58,35 @@ public class Project extends OafEntity implements Serializable {
private Float fundedamount;
private List<Programme> programme;
private String h2020topiccode;
private String h2020topicdescription;
private List<H2020Classification> h2020classification;
public String getH2020topicdescription() {
return h2020topicdescription;
}
public void setH2020topicdescription(String h2020topicdescription) {
this.h2020topicdescription = h2020topicdescription;
}
public String getH2020topiccode() {
return h2020topiccode;
}
public void setH2020topiccode(String h2020topiccode) {
this.h2020topiccode = h2020topiccode;
}
public List<H2020Classification> getH2020classification() {
return h2020classification;
}
public void setH2020classification(List<H2020Classification> h2020classification) {
this.h2020classification = h2020classification;
}
public Field<String> getWebsiteurl() {
return websiteurl;
@ -268,14 +296,6 @@ public class Project extends OafEntity implements Serializable {
this.fundedamount = fundedamount;
}
public List<Programme> getProgramme() {
return programme;
}
public void setProgramme(List<Programme> programme) {
this.programme = programme;
}
@Override
public void mergeFrom(OafEntity e) {
super.mergeFrom(e);
@ -331,7 +351,9 @@ public class Project extends OafEntity implements Serializable {
? p.getFundedamount()
: fundedamount;
programme = mergeLists(programme, p.getProgramme());
// programme = mergeLists(programme, p.getProgramme());
h2020classification = mergeLists(h2020classification, p.getH2020classification());
mergeOAFDataInfo(e);
}

View File

@ -7,6 +7,8 @@ import java.util.Comparator;
import java.util.List;
import java.util.stream.Collectors;
import eu.dnetlib.dhp.schema.common.LicenseComparator;
public class Result extends OafEntity implements Serializable {
private List<Measure> measures;
@ -245,7 +247,8 @@ public class Result extends OafEntity implements Serializable {
instance = mergeLists(instance, r.getInstance());
if (r.getBestaccessright() != null && compareTrust(this, r) < 0)
if (r.getBestaccessright() != null
&& new LicenseComparator().compare(r.getBestaccessright(), bestaccessright) < 0)
bestaccessright = r.getBestaccessright();
if (r.getResulttype() != null && compareTrust(this, r) < 0)

View File

@ -1,30 +0,0 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import java.util.List;
import eu.dnetlib.dhp.schema.oaf.KeyValue;
import eu.dnetlib.dhp.schema.oaf.Relation;
public class DLIRelation extends Relation {
private String dateOfCollection;
private List<KeyValue> collectedFrom;
public List<KeyValue> getCollectedFrom() {
return collectedFrom;
}
public void setCollectedFrom(List<KeyValue> collectedFrom) {
this.collectedFrom = collectedFrom;
}
public String getDateOfCollection() {
return dateOfCollection;
}
public void setDateOfCollection(String dateOfCollection) {
this.dateOfCollection = dateOfCollection;
}
}

View File

@ -2,10 +2,8 @@
package eu.dnetlib.dhp.schema.scholexplorer;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.HashMap;
import java.util.List;
import java.util.Map;
import java.util.*;
import java.util.stream.Collectors;
import org.apache.commons.lang3.StringUtils;
@ -78,6 +76,25 @@ public class DLIUnknown extends Oaf implements Serializable {
if ("complete".equalsIgnoreCase(p.completionStatus))
completionStatus = "complete";
dlicollectedfrom = mergeProvenance(dlicollectedfrom, p.getDlicollectedfrom());
if (StringUtils.isEmpty(id) && StringUtils.isNoneEmpty(p.getId()))
id = p.getId();
if (StringUtils.isEmpty(dateofcollection) && StringUtils.isNoneEmpty(p.getDateofcollection()))
dateofcollection = p.getDateofcollection();
if (StringUtils.isEmpty(dateoftransformation) && StringUtils.isNoneEmpty(p.getDateoftransformation()))
dateofcollection = p.getDateoftransformation();
pid = mergeLists(pid, p.getPid());
}
protected <T> List<T> mergeLists(final List<T>... lists) {
return Arrays
.stream(lists)
.filter(Objects::nonNull)
.flatMap(List::stream)
.filter(Objects::nonNull)
.distinct()
.collect(Collectors.toList());
}
private List<ProvenaceInfo> mergeProvenance(

View File

@ -0,0 +1,90 @@
package eu.dnetlib.dhp.schema.scholexplorer
import eu.dnetlib.dhp.schema.oaf.{DataInfo, Field, KeyValue, Qualifier, StructuredProperty}
object OafUtils {
def generateKeyValue(key: String, value: String): KeyValue = {
val kv: KeyValue = new KeyValue()
kv.setKey(key)
kv.setValue(value)
kv.setDataInfo(generateDataInfo("0.9"))
kv
}
def generateDataInfo(trust: String = "0.9", invisibile: Boolean = false): DataInfo = {
val di = new DataInfo
di.setDeletedbyinference(false)
di.setInferred(false)
di.setInvisible(false)
di.setTrust(trust)
di.setProvenanceaction(createQualifier("sysimport:actionset", "dnet:provenanceActions"))
di
}
def createQualifier(cls: String, sch: String): Qualifier = {
createQualifier(cls, cls, sch, sch)
}
def createQualifier(classId: String, className: String, schemeId: String, schemeName: String): Qualifier = {
val q: Qualifier = new Qualifier
q.setClassid(classId)
q.setClassname(className)
q.setSchemeid(schemeId)
q.setSchemename(schemeName)
q
}
def asField[T](value: T): Field[T] = {
val tmp = new Field[T]
tmp.setValue(value)
tmp
}
def createSP(value: String, classId: String,className:String, schemeId: String, schemeName:String): StructuredProperty = {
val sp = new StructuredProperty
sp.setQualifier(createQualifier(classId,className, schemeId, schemeName))
sp.setValue(value)
sp
}
def createSP(value: String, classId: String,className:String, schemeId: String, schemeName:String, dataInfo: DataInfo): StructuredProperty = {
val sp = new StructuredProperty
sp.setQualifier(createQualifier(classId,className, schemeId, schemeName))
sp.setValue(value)
sp.setDataInfo(dataInfo)
sp
}
def createSP(value: String, classId: String, schemeId: String): StructuredProperty = {
val sp = new StructuredProperty
sp.setQualifier(createQualifier(classId, schemeId))
sp.setValue(value)
sp
}
def createSP(value: String, classId: String, schemeId: String, dataInfo: DataInfo): StructuredProperty = {
val sp = new StructuredProperty
sp.setQualifier(createQualifier(classId, schemeId))
sp.setValue(value)
sp.setDataInfo(dataInfo)
sp
}
}

View File

@ -66,6 +66,19 @@
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.poi/poi-ooxml -->
<dependency>
<groupId>org.apache.poi</groupId>
<artifactId>poi-ooxml</artifactId>
</dependency>
<!-- https://mvnrepository.com/artifact/org.apache.commons/commons-compress -->
<dependency>
<groupId>org.apache.commons</groupId>
<artifactId>commons-compress</artifactId>
</dependency>
</dependencies>

View File

@ -4,11 +4,13 @@ package eu.dnetlib.dhp.actionmanager.project;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.HashMap;
import java.util.Map;
import java.util.Optional;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.*;
import org.slf4j.Logger;
@ -16,11 +18,79 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
import scala.Tuple2;
/**
* Among all the programmes provided in the csv file, selects those in H2020 framework that have an english title.
*
* The title is then handled to get the programme description at a certain level. The set of programme titles will then
* be used to associate a classification for the programme.
*
* The programme code describes an hierarchy that can be exploited to provide the classification. To determine the hierarchy
* the code can be split by '.'. If the length of the splitted code is less than or equal to 2 it can be directly used
* as the classification: H2020-EU -> Horizon 2020 Framework Programme (It will never be repeated),
* H2020-EU.1. -> Excellent science, H2020-EU.2. -> Industrial leadership etc.
*
* The codes are ordered and for all of them the concatenation of all the titles (from the element in position 1 of
* the splitted code) handled as below is used to create the classification. For example:
*
* H2020-EU.1.1 -> Excellent science | European Research Council (ERC)
* from H2020-EU.1. -> Excellence science and H2020-EU.1.1. -> European Research Council (ERC)
*
* H2020-EU.3.1.3.1. -> Societal challenges | Health, demographic change and well-being | Treating and managing disease | Treating disease, including developing regenerative medicine
* from H2020-EU.3. -> Societal challenges,
* H2020-EU.3.1. -> Health, demographic change and well-being
* H2020-EU.3.1.3 -> Treating and managing disease
* H2020-EU.3.1.3.1. -> Treating disease, including developing regenerative medicine
*
* The classification up to level three, will be split in dedicated variables, while the complete classification will be stored
* in a variable called classification and provided as shown above.
*
* The programme title is not give in a standardized way:
*
* - Sometimes associated to the higher level in the hierarchy we can find Priority in title other times it is not the
* case. Since it is not uniform, we removed priority from the handled titles:
*
* H2020-EU.1. -> PRIORITY 'Excellent science'
* H2020-EU.2. -> PRIORITY 'Industrial leadership'
* H2020-EU.3. -> PRIORITY 'Societal challenges
*
* will become
*
* H2020-EU.1. -> Excellent science
* H2020-EU.2. -> Industrial leadership
* H2020-EU.3. -> Societal challenges
*
* - Sometimes the title of the parent is repeated in the title for the code, but it is not always the case, so, titles
* associated to previous levels in the hierarchy are removed from the code title.
*
* H2020-EU.1.2. -> EXCELLENT SCIENCE - Future and Emerging Technologies (FET)
* H2020-EU.2.2. -> INDUSTRIAL LEADERSHIP - Access to risk finance
* H2020-EU.3.4. -> SOCIETAL CHALLENGES - Smart, Green And Integrated Transport
*
* will become
*
* H2020-EU.1.2. -> Future and Emerging Technologies (FET)
* H2020-EU.2.2. -> Access to risk finance
* H2020-EU.3.4. -> Smart, Green And Integrated Transport
*
* This holds at all levels in the hierarchy. Hence
*
* H2020-EU.2.1.2. -> INDUSTRIAL LEADERSHIP - Leadership in enabling and industrial technologies Nanotechnologies
*
* will become
*
* H2020-EU.2.1.2. -> Nanotechnologies
*
* - Euratom is not given in the way the other programmes are: H2020-EU. but H2020-Euratom- . So we need to write
* specific code for it
*
*
*
*/
public class PrepareProgramme {
private static final Logger log = LoggerFactory.getLogger(PrepareProgramme.class);
@ -69,49 +139,127 @@ public class PrepareProgramme {
private static void exec(SparkSession spark, String programmePath, String outputPath) {
Dataset<CSVProgramme> programme = readPath(spark, programmePath, CSVProgramme.class);
programme
JavaRDD<CSVProgramme> h2020Programmes = programme
.toJavaRDD()
.filter(p -> !p.getCode().contains("FP7"))
.filter(p -> p.getFrameworkProgramme().trim().equalsIgnoreCase("H2020"))
.mapToPair(csvProgramme -> new Tuple2<>(csvProgramme.getCode(), csvProgramme))
.reduceByKey((a, b) -> {
if (StringUtils.isEmpty(a.getShortTitle())) {
if (StringUtils.isEmpty(b.getShortTitle())) {
if (StringUtils.isEmpty(a.getTitle())) {
if (StringUtils.isNotEmpty(b.getTitle())) {
a.setShortTitle(b.getTitle());
a.setLanguage(b.getLanguage());
}
} else {// notIsEmpty a.getTitle
if (StringUtils.isEmpty(b.getTitle())) {
a.setShortTitle(a.getTitle());
} else {
if (b.getLanguage().equalsIgnoreCase("en")) {
a.setShortTitle(b.getTitle());
a.setLanguage(b.getLanguage());
} else {
a.setShortTitle(a.getTitle());
}
}
}
} else {// not isEmpty b.getShortTitle
a.setShortTitle(b.getShortTitle());
// a.setLanguage(b.getLanguage());
if (!a.getLanguage().equals("en")) {
if (b.getLanguage().equalsIgnoreCase("en")) {
a.setTitle(b.getTitle());
a.setLanguage(b.getLanguage());
}
}
if (StringUtils.isEmpty(a.getShortTitle())) {
if (!StringUtils.isEmpty(b.getShortTitle())) {
a.setShortTitle(b.getShortTitle());
}
}
return a;
})
.map(p -> {
CSVProgramme csvProgramme = p._2();
if (StringUtils.isEmpty(csvProgramme.getShortTitle())) {
csvProgramme.setShortTitle(csvProgramme.getTitle());
String programmeTitle = csvProgramme.getTitle().trim();
if (programmeTitle.length() > 8 && programmeTitle.substring(0, 8).equalsIgnoreCase("PRIORITY")) {
programmeTitle = programmeTitle.substring(9);
if (programmeTitle.charAt(0) == '\'') {
programmeTitle = programmeTitle.substring(1);
}
if (programmeTitle.charAt(programmeTitle.length() - 1) == '\'') {
programmeTitle = programmeTitle.substring(0, programmeTitle.length() - 1);
}
csvProgramme.setTitle(programmeTitle);
}
return OBJECT_MAPPER.writeValueAsString(csvProgramme);
})
return csvProgramme;
});
prepareClassification(h2020Programmes);
h2020Programmes
.map(csvProgramme -> OBJECT_MAPPER.writeValueAsString(csvProgramme))
.saveAsTextFile(outputPath);
}
private static void prepareClassification(JavaRDD<CSVProgramme> h2020Programmes) {
Object[] codedescription = h2020Programmes
.map(value -> new Tuple2<>(value.getCode(), value.getTitle()))
.collect()
.toArray();
for (int i = 0; i < codedescription.length - 1; i++) {
for (int j = i + 1; j < codedescription.length; j++) {
Tuple2<String, String> t2i = (Tuple2<String, String>) codedescription[i];
Tuple2<String, String> t2j = (Tuple2<String, String>) codedescription[j];
if (t2i._1().compareTo(t2j._1()) > 0) {
Tuple2<String, String> temp = t2i;
codedescription[i] = t2j;
codedescription[j] = temp;
}
}
}
Map<String, String> map = new HashMap<>();
for (int j = 0; j < codedescription.length; j++) {
Tuple2<String, String> entry = (Tuple2<String, String>) codedescription[j];
String ent = entry._1();
if (ent.contains("Euratom-")) {
ent = ent.replace("-Euratom-", ".Euratom.");
}
String[] tmp = ent.split("\\.");
if (tmp.length <= 2) {
map.put(entry._1(), entry._2());
} else {
if (ent.endsWith(".")) {
ent = ent.substring(0, ent.length() - 1);
}
String key = ent.substring(0, ent.lastIndexOf(".") + 1);
if (key.contains("Euratom")) {
key = key.replace(".Euratom.", "-Euratom-");
ent = ent.replace(".Euratom.", "-Euratom-");
if (key.endsWith("-")) {
key = key.substring(0, key.length() - 1);
}
}
String current = entry._2();
if (!ent.contains("Euratom")) {
String parent;
String tmp_key = tmp[0] + ".";
for (int i = 1; i < tmp.length - 1; i++) {
tmp_key += tmp[i] + ".";
parent = map.get(tmp_key).toLowerCase().trim();
if (parent.contains("|")) {
parent = parent.substring(parent.lastIndexOf("|") + 1).trim();
}
if (current.trim().length() > parent.length()
&& current.toLowerCase().trim().substring(0, parent.length()).equals(parent)) {
current = current.substring(parent.length() + 1);
if (current.trim().charAt(0) == '-' || current.trim().charAt(0) == '') {
current = current.trim().substring(1).trim();
}
}
}
}
map.put(ent + ".", map.get(key) + " | " + current);
}
}
h2020Programmes.foreach(csvProgramme -> {
if (!csvProgramme.getCode().endsWith(".") && !csvProgramme.getCode().contains("Euratom")
&& !csvProgramme.getCode().equals("H2020-EC"))
csvProgramme.setClassification(map.get(csvProgramme.getCode() + "."));
else
csvProgramme.setClassification(map.get(csvProgramme.getCode()));
});
}
public static <R> Dataset<R> readPath(
SparkSession spark, String inputPath, Class<R> clazz) {
return spark

View File

@ -6,9 +6,7 @@ import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.util.*;
import org.apache.commons.io.IOUtils;
import org.apache.commons.lang3.StringUtils;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.function.FlatMapFunction;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.sql.Dataset;
@ -20,12 +18,16 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProject;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProject;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
import scala.Tuple2;
/**
* Selects only the relevant information collected with the projects: project grant agreement, project programme code and
* project topic code for the projects that are also collected from OpenAIRE.
*/
public class PrepareProjects {
private static final Logger log = LoggerFactory.getLogger(PrepareProgramme.class);
@ -97,10 +99,14 @@ public class PrepareProjects {
if (csvProject.isPresent()) {
String[] programme = csvProject.get().getProgramme().split(";");
String topic = csvProject.get().getTopics();
Arrays
.stream(programme)
.forEach(p -> {
CSVProject proj = new CSVProject();
proj.setTopics(topic);
proj.setProgramme(p);
proj.setId(csvProject.get().getId());
csvProjectList.add(proj);

View File

@ -3,6 +3,9 @@ package eu.dnetlib.dhp.actionmanager.project;
import java.io.Serializable;
/**
* Class to store the grande agreement (code) of the collected projects
*/
public class ProjectSubset implements Serializable {
private String code;
@ -14,4 +17,5 @@ public class ProjectSubset implements Serializable {
public void setCode(String code) {
this.code = code;
}
}

View File

@ -25,6 +25,10 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.DbClient;
/**
* queries the OpenAIRE database to get the grant agreement of projects collected from corda__h2020. The code collected
* are written on hdfs using the ProjectSubset model
*/
public class ReadProjectsFromDB implements Closeable {
private final DbClient dbClient;
@ -33,7 +37,7 @@ public class ReadProjectsFromDB implements Closeable {
private final BufferedWriter writer;
private final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private final static String query = "SELECT code " +
private final static String query = "SELECT code " +
"from projects where id like 'corda__h2020%' ";
public static void main(final String[] args) throws Exception {
@ -72,7 +76,6 @@ public class ReadProjectsFromDB implements Closeable {
try {
ProjectSubset p = new ProjectSubset();
p.setCode(rs.getString("code"));
return Arrays.asList(p);
} catch (final Exception e) {

View File

@ -3,47 +3,54 @@ package eu.dnetlib.dhp.actionmanager.project;
import static eu.dnetlib.dhp.common.SparkSessionSupport.runWithSparkSession;
import java.io.IOException;
import java.util.Arrays;
import java.util.HashMap;
import java.util.Objects;
import java.util.Optional;
import java.util.function.Consumer;
import org.apache.commons.io.IOUtils;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.Path;
import org.apache.hadoop.io.IntWritable;
import org.apache.hadoop.io.SequenceFile;
import org.apache.commons.lang3.StringUtils;
import org.apache.hadoop.io.Text;
import org.apache.hadoop.mapred.SequenceFileOutputFormat;
import org.apache.hadoop.mapred.TextOutputFormat;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.function.MapFunction;
import org.apache.spark.api.java.function.MapGroupsFunction;
import org.apache.spark.rdd.SequenceFileRDDFunctions;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.SaveMode;
import org.apache.spark.sql.SparkSession;
import org.slf4j.Logger;
import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProject;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProject;
import eu.dnetlib.dhp.actionmanager.project.utils.EXCELTopic;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
import eu.dnetlib.dhp.common.HdfsSupport;
import eu.dnetlib.dhp.schema.action.AtomicAction;
import eu.dnetlib.dhp.schema.common.ModelSupport;
import eu.dnetlib.dhp.schema.oaf.Programme;
import eu.dnetlib.dhp.schema.oaf.H2020Classification;
import eu.dnetlib.dhp.schema.oaf.H2020Programme;
import eu.dnetlib.dhp.schema.oaf.Project;
import eu.dnetlib.dhp.utils.DHPUtils;
import scala.Function1;
import scala.Tuple2;
import scala.runtime.BoxedUnit;
/**
* Class that makes the ActionSet. To prepare the AS two joins are needed
*
* 1. join betweem the collected project subset and the programme extenden with the classification on the grant agreement.
* For each entry a
* eu.dnetlib.dhp.Project entity is created and the information about H2020Classification is set together with the
* h2020topiccode variable
* 2. join between the output of the previous step and the topic information on the topic code. Each time a match is
* found the h2020topicdescription variable is set.
*
* To produce one single entry for each project code a step of groupoing is needed: each project can be associated to more
* than one programme.
*
*
*/
public class SparkAtomicActionJob {
private static final Logger log = LoggerFactory.getLogger(SparkAtomicActionJob.class);
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
@ -77,6 +84,9 @@ public class SparkAtomicActionJob {
final String programmePath = parser.get("programmePath");
log.info("programmePath {}: ", programmePath);
final String topicPath = parser.get("topicPath");
log.info("topic path {}: ", topicPath);
SparkConf conf = new SparkConf();
runWithSparkSession(
@ -88,6 +98,7 @@ public class SparkAtomicActionJob {
spark,
projectPath,
programmePath,
topicPath,
outputPath);
});
}
@ -98,31 +109,53 @@ public class SparkAtomicActionJob {
private static void getAtomicActions(SparkSession spark, String projectPatH,
String programmePath,
String topicPath,
String outputPath) {
Dataset<CSVProject> project = readPath(spark, projectPatH, CSVProject.class);
Dataset<CSVProgramme> programme = readPath(spark, programmePath, CSVProgramme.class);
Dataset<EXCELTopic> topic = readPath(spark, topicPath, EXCELTopic.class);
project
Dataset<Project> aaproject = project
.joinWith(programme, project.col("programme").equalTo(programme.col("code")), "left")
.map(c -> {
CSVProject csvProject = c._1();
Optional<CSVProgramme> csvProgramme = Optional.ofNullable(c._2());
if (csvProgramme.isPresent()) {
Project p = new Project();
p
.setId(
createOpenaireId(
ModelSupport.entityIdPrefix.get("project"),
"corda__h2020", csvProject.getId()));
Programme pm = new Programme();
pm.setCode(csvProject.getProgramme());
pm.setDescription(csvProgramme.get().getShortTitle());
p.setProgramme(Arrays.asList(pm));
return p;
}
.map((MapFunction<Tuple2<CSVProject, CSVProgramme>, Project>) c -> {
return null;
CSVProject csvProject = c._1();
Optional<CSVProgramme> ocsvProgramme = Optional.ofNullable(c._2());
return Optional
.ofNullable(c._2())
.map(csvProgramme -> {
Project pp = new Project();
pp
.setId(
createOpenaireId(
ModelSupport.entityIdPrefix.get("project"),
"corda__h2020", csvProject.getId()));
pp.setH2020topiccode(csvProject.getTopics());
H2020Programme pm = new H2020Programme();
H2020Classification h2020classification = new H2020Classification();
pm.setCode(csvProject.getProgramme());
h2020classification.setClassification(ocsvProgramme.get().getClassification());
h2020classification.setH2020Programme(pm);
setLevelsAndProgramme(h2020classification, ocsvProgramme.get().getClassification());
pp.setH2020classification(Arrays.asList(h2020classification));
return pp;
})
.orElse(null);
}, Encoders.bean(Project.class));
aaproject
.joinWith(topic, aaproject.col("h2020topiccode").equalTo(topic.col("code")))
.map((MapFunction<Tuple2<Project, EXCELTopic>, Project>) p -> {
Optional<EXCELTopic> op = Optional.ofNullable(p._2());
Project rp = p._1();
if (op.isPresent()) {
rp.setH2020topicdescription(op.get().getTitle());
}
return rp;
}, Encoders.bean(Project.class))
.filter(Objects::nonNull)
.groupByKey(
@ -144,6 +177,18 @@ public class SparkAtomicActionJob {
}
private static void setLevelsAndProgramme(H2020Classification h2020Classification, String classification) {
String[] tmp = classification.split(" \\| ");
h2020Classification.setLevel1(tmp[0]);
if (tmp.length > 1) {
h2020Classification.setLevel2(tmp[1]);
}
if (tmp.length > 2) {
h2020Classification.setLevel3(tmp[2]);
}
h2020Classification.getH2020Programme().setDescription(tmp[tmp.length - 1]);
}
public static <R> Dataset<R> readPath(
SparkSession spark, String inputPath, Class<R> clazz) {
return spark

View File

@ -1,52 +0,0 @@
package eu.dnetlib.dhp.actionmanager.project.csvutils;
import java.io.Serializable;
public class CSVProgramme implements Serializable {
private String rcn;
private String code;
private String title;
private String shortTitle;
private String language;
public String getRcn() {
return rcn;
}
public void setRcn(String rcn) {
this.rcn = rcn;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getShortTitle() {
return shortTitle;
}
public void setShortTitle(String shortTitle) {
this.shortTitle = shortTitle;
}
public String getLanguage() {
return language;
}
public void setLanguage(String language) {
this.language = language;
}
}

View File

@ -1,5 +1,5 @@
package eu.dnetlib.dhp.actionmanager.project.csvutils;
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.IOException;
import java.util.ArrayList;
@ -10,6 +10,9 @@ import org.apache.commons.csv.CSVFormat;
import org.apache.commons.csv.CSVRecord;
import org.apache.commons.lang.reflect.FieldUtils;
/**
* Reads a generic csv and maps it into classes that mirror its schema
*/
public class CSVParser {
public <R> List<R> parse(String csvFile, String classForName)

View File

@ -0,0 +1,137 @@
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.Serializable;
/**
* The model for the programme csv file
*/
public class CSVProgramme implements Serializable {
private String parentProgramme;
private String frameworkProgramme;
private String startDate;
private String endDate;
private String objective;
private String subjects;
private String legalBasis;
private String call;
private String rcn;
private String code;
private String title;
private String shortTitle;
private String language;
private String classification;
public String getClassification() {
return classification;
}
public void setClassification(String classification) {
this.classification = classification;
}
public String getRcn() {
return rcn;
}
public void setRcn(String rcn) {
this.rcn = rcn;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getShortTitle() {
return shortTitle;
}
public void setShortTitle(String shortTitle) {
this.shortTitle = shortTitle;
}
public String getLanguage() {
return language;
}
public void setLanguage(String language) {
this.language = language;
}
public String getParentProgramme() {
return parentProgramme;
}
public void setParentProgramme(String parentProgramme) {
this.parentProgramme = parentProgramme;
}
public String getFrameworkProgramme() {
return frameworkProgramme;
}
public void setFrameworkProgramme(String frameworkProgramme) {
this.frameworkProgramme = frameworkProgramme;
}
public String getStartDate() {
return startDate;
}
public void setStartDate(String startDate) {
this.startDate = startDate;
}
public String getEndDate() {
return endDate;
}
public void setEndDate(String endDate) {
this.endDate = endDate;
}
public String getObjective() {
return objective;
}
public void setObjective(String objective) {
this.objective = objective;
}
public String getSubjects() {
return subjects;
}
public void setSubjects(String subjects) {
this.subjects = subjects;
}
public String getLegalBasis() {
return legalBasis;
}
public void setLegalBasis(String legalBasis) {
this.legalBasis = legalBasis;
}
public String getCall() {
return call;
}
public void setCall(String call) {
this.call = call;
}
}

View File

@ -1,8 +1,11 @@
package eu.dnetlib.dhp.actionmanager.project.csvutils;
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.Serializable;
/**
* the mmodel for the projects csv file
*/
public class CSVProject implements Serializable {
private String rcn;
private String id;

View File

@ -0,0 +1,75 @@
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.IOException;
import java.io.InputStream;
import java.util.ArrayList;
import java.util.Iterator;
import java.util.List;
import org.apache.commons.lang.StringUtils;
import org.apache.commons.lang.reflect.FieldUtils;
import org.apache.poi.openxml4j.exceptions.InvalidFormatException;
import org.apache.poi.openxml4j.opc.OPCPackage;
import org.apache.poi.ss.usermodel.Cell;
import org.apache.poi.ss.usermodel.DataFormatter;
import org.apache.poi.ss.usermodel.Row;
import org.apache.poi.xssf.usermodel.XSSFSheet;
import org.apache.poi.xssf.usermodel.XSSFWorkbook;
/**
* Reads a generic excel file and maps it into classes that mirror its schema
*/
public class EXCELParser {
public <R> List<R> parse(InputStream file, String classForName)
throws ClassNotFoundException, IOException, IllegalAccessException, InstantiationException,
InvalidFormatException {
// OPCPackage pkg = OPCPackage.open(httpConnector.getInputSourceAsStream(URL));
OPCPackage pkg = OPCPackage.open(file);
XSSFWorkbook wb = new XSSFWorkbook(pkg);
XSSFSheet sheet = wb.getSheet("cordisref-H2020topics");
List<R> ret = new ArrayList<>();
DataFormatter dataFormatter = new DataFormatter();
Iterator<Row> rowIterator = sheet.rowIterator();
List<String> headers = new ArrayList<>();
int count = 0;
while (rowIterator.hasNext()) {
Row row = rowIterator.next();
if (count == 0) {
Iterator<Cell> cellIterator = row.cellIterator();
while (cellIterator.hasNext()) {
Cell cell = cellIterator.next();
headers.add(dataFormatter.formatCellValue(cell));
}
} else {
Class<?> clazz = Class.forName("eu.dnetlib.dhp.actionmanager.project.utils.EXCELTopic");
final Object cc = clazz.newInstance();
for (int i = 0; i < headers.size(); i++) {
Cell cell = row.getCell(i);
String value = dataFormatter.formatCellValue(cell);
FieldUtils.writeField(cc, headers.get(i), dataFormatter.formatCellValue(cell), true);
}
EXCELTopic et = (EXCELTopic) cc;
if (StringUtils.isNotBlank(et.getRcn())) {
ret.add((R) cc);
}
}
count += 1;
}
return ret;
}
}

View File

@ -0,0 +1,127 @@
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.Serializable;
/**
* the model class for the topic excel file
*/
public class EXCELTopic implements Serializable {
private String rcn;
private String language;
private String code;
private String parentProgramme;
private String frameworkProgramme;
private String startDate;
private String endDate;
private String title;
private String shortTitle;
private String objective;
private String subjects;
private String legalBasis;
private String call;
public String getRcn() {
return rcn;
}
public void setRcn(String rcn) {
this.rcn = rcn;
}
public String getLanguage() {
return language;
}
public void setLanguage(String language) {
this.language = language;
}
public String getCode() {
return code;
}
public void setCode(String code) {
this.code = code;
}
public String getParentProgramme() {
return parentProgramme;
}
public void setParentProgramme(String parentProgramme) {
this.parentProgramme = parentProgramme;
}
public String getFrameworkProgramme() {
return frameworkProgramme;
}
public void setFrameworkProgramme(String frameworkProgramme) {
this.frameworkProgramme = frameworkProgramme;
}
public String getStartDate() {
return startDate;
}
public void setStartDate(String startDate) {
this.startDate = startDate;
}
public String getEndDate() {
return endDate;
}
public void setEndDate(String endDate) {
this.endDate = endDate;
}
public String getTitle() {
return title;
}
public void setTitle(String title) {
this.title = title;
}
public String getShortTitle() {
return shortTitle;
}
public void setShortTitle(String shortTitle) {
this.shortTitle = shortTitle;
}
public String getObjective() {
return objective;
}
public void setObjective(String objective) {
this.objective = objective;
}
public String getSubjects() {
return subjects;
}
public void setSubjects(String subjects) {
this.subjects = subjects;
}
public String getLegalBasis() {
return legalBasis;
}
public void setLegalBasis(String legalBasis) {
this.legalBasis = legalBasis;
}
public String getCall() {
return call;
}
public void setCall(String call) {
this.call = call;
}
}

View File

@ -1,5 +1,5 @@
package eu.dnetlib.dhp.actionmanager.project.csvutils;
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.BufferedWriter;
import java.io.Closeable;
@ -20,6 +20,9 @@ import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.httpconnector.HttpConnector;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
/**
* Applies the parsing of a csv file and writes the Serialization of it in hdfs
*/
public class ReadCSV implements Closeable {
private static final Log log = LogFactory.getLog(ReadCSV.class);
private final Configuration conf;

View File

@ -0,0 +1,98 @@
package eu.dnetlib.dhp.actionmanager.project.utils;
import java.io.*;
import java.nio.charset.StandardCharsets;
import org.apache.commons.io.IOUtils;
import org.apache.commons.logging.Log;
import org.apache.commons.logging.LogFactory;
import org.apache.hadoop.conf.Configuration;
import org.apache.hadoop.fs.FSDataOutputStream;
import org.apache.hadoop.fs.FileSystem;
import org.apache.hadoop.fs.Path;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.httpconnector.HttpConnector;
import eu.dnetlib.dhp.application.ArgumentApplicationParser;
/**
* Applies the parsing of an excel file and writes the Serialization of it in hdfs
*/
public class ReadExcel implements Closeable {
private static final Log log = LogFactory.getLog(ReadCSV.class);
private final Configuration conf;
private final BufferedWriter writer;
private final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private InputStream excelFile;
public static void main(final String[] args) throws Exception {
final ArgumentApplicationParser parser = new ArgumentApplicationParser(
IOUtils
.toString(
ReadCSV.class
.getResourceAsStream(
"/eu/dnetlib/dhp/actionmanager/project/parameters.json")));
parser.parseArgument(args);
final String fileURL = parser.get("fileURL");
final String hdfsPath = parser.get("hdfsPath");
final String hdfsNameNode = parser.get("hdfsNameNode");
final String classForName = parser.get("classForName");
try (final ReadExcel readExcel = new ReadExcel(hdfsPath, hdfsNameNode, fileURL)) {
log.info("Getting Excel file...");
readExcel.execute(classForName);
}
}
public void execute(final String classForName) throws Exception {
EXCELParser excelParser = new EXCELParser();
excelParser
.parse(excelFile, classForName)
.stream()
.forEach(p -> write(p));
}
@Override
public void close() throws IOException {
writer.close();
}
public ReadExcel(
final String hdfsPath,
final String hdfsNameNode,
final String fileURL)
throws Exception {
this.conf = new Configuration();
this.conf.set("fs.defaultFS", hdfsNameNode);
HttpConnector httpConnector = new HttpConnector();
FileSystem fileSystem = FileSystem.get(this.conf);
Path hdfsWritePath = new Path(hdfsPath);
FSDataOutputStream fsDataOutputStream = null;
if (fileSystem.exists(hdfsWritePath)) {
fileSystem.delete(hdfsWritePath, false);
}
fsDataOutputStream = fileSystem.create(hdfsWritePath);
this.writer = new BufferedWriter(new OutputStreamWriter(fsDataOutputStream, StandardCharsets.UTF_8));
this.excelFile = httpConnector.getInputSourceAsStream(fileURL);
;
}
protected void write(final Object p) {
try {
writer.write(OBJECT_MAPPER.writeValueAsString(p));
writer.newLine();
} catch (final Exception e) {
throw new RuntimeException(e);
}
}
}

View File

@ -17,6 +17,12 @@
"paramDescription": "the URL from where to get the programme file",
"paramRequired": true
},
{
"paramName": "tp",
"paramLongName": "topicPath",
"paramDescription": "the URL from where to get the topic file",
"paramRequired": true
},
{
"paramName": "o",
"paramLongName": "outputPath",

View File

@ -31,6 +31,10 @@
<name>spark2SqlQueryExecutionListeners</name>
<value>com.cloudera.spark.lineage.NavigatorQueryListener</value>
</property>
<property>
<name>oozie.launcher.mapreduce.user.classpath.first</name>
<value>true</value>
</property>
<property>
<name>sparkExecutorNumber</name>
<value>4</value>

View File

@ -10,6 +10,10 @@
<description>the url where to get the programme file</description>
</property>
<property>
<name>topicFileURL</name>
<description>the url where to get the topic file</description>
</property>
<property>
<name>outputPath</name>
<description>path where to store the action set</description>
@ -33,11 +37,11 @@
<action name="get_project_file">
<java>
<main-class>eu.dnetlib.dhp.actionmanager.project.csvutils.ReadCSV</main-class>
<main-class>eu.dnetlib.dhp.actionmanager.project.utils.ReadCSV</main-class>
<arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
<arg>--fileURL</arg><arg>${projectFileURL}</arg>
<arg>--hdfsPath</arg><arg>${workingDir}/projects</arg>
<arg>--classForName</arg><arg>eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProject</arg>
<arg>--classForName</arg><arg>eu.dnetlib.dhp.actionmanager.project.utils.CSVProject</arg>
</java>
<ok to="get_programme_file"/>
<error to="Kill"/>
@ -45,11 +49,23 @@
<action name="get_programme_file">
<java>
<main-class>eu.dnetlib.dhp.actionmanager.project.csvutils.ReadCSV</main-class>
<main-class>eu.dnetlib.dhp.actionmanager.project.utils.ReadCSV</main-class>
<arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
<arg>--fileURL</arg><arg>${programmeFileURL}</arg>
<arg>--hdfsPath</arg><arg>${workingDir}/programme</arg>
<arg>--classForName</arg><arg>eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme</arg>
<arg>--classForName</arg><arg>eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme</arg>
</java>
<ok to="get_topic_file"/>
<error to="Kill"/>
</action>
<action name="get_topic_file">
<java>
<main-class>eu.dnetlib.dhp.actionmanager.project.utils.ReadExcel</main-class>
<arg>--hdfsNameNode</arg><arg>${nameNode}</arg>
<arg>--fileURL</arg><arg>${topicFileURL}</arg>
<arg>--hdfsPath</arg><arg>${workingDir}/topic</arg>
<arg>--classForName</arg><arg>eu.dnetlib.dhp.actionmanager.project.utils.EXCELTopic</arg>
</java>
<ok to="read_projects"/>
<error to="Kill"/>
@ -136,6 +152,7 @@
</spark-opts>
<arg>--projectPath</arg><arg>${workingDir}/preparedProjects</arg>
<arg>--programmePath</arg><arg>${workingDir}/preparedProgramme</arg>
<arg>--topicPath</arg><arg>${workingDir}/topic</arg>
<arg>--outputPath</arg><arg>${outputPath}</arg>
</spark>
<ok to="End"/>

View File

@ -1,27 +1,16 @@
package eu.dnetlib.dhp.actionmanager.project;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.List;
import org.apache.commons.io.IOUtils;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.Test;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVParser;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVParser;
public class CSVParserTest {
private static Path workingDir;
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files.createTempDirectory(CSVParserTest.class.getSimpleName());
}
@Test
public void readProgrammeTest() throws Exception {
@ -33,9 +22,10 @@ public class CSVParserTest {
CSVParser csvParser = new CSVParser();
List<Object> pl = csvParser.parse(programmecsv, "eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme");
List<Object> pl = csvParser.parse(programmecsv, "eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme");
System.out.println(pl.size());
Assertions.assertEquals(24, pl.size());
}
}

View File

@ -0,0 +1,42 @@
package eu.dnetlib.dhp.actionmanager.project;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.List;
import org.apache.poi.openxml4j.exceptions.InvalidFormatException;
import org.junit.jupiter.api.Assertions;
import org.junit.jupiter.api.BeforeAll;
import org.junit.jupiter.api.Test;
import eu.dnetlib.dhp.actionmanager.project.httpconnector.CollectorServiceException;
import eu.dnetlib.dhp.actionmanager.project.httpconnector.HttpConnector;
import eu.dnetlib.dhp.actionmanager.project.utils.EXCELParser;
public class EXCELParserTest {
private static Path workingDir;
private HttpConnector httpConnector = new HttpConnector();
private static final String URL = "http://cordis.europa.eu/data/reference/cordisref-H2020topics.xlsx";
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files.createTempDirectory(CSVParserTest.class.getSimpleName());
}
@Test
public void test1() throws CollectorServiceException, IOException, InvalidFormatException, ClassNotFoundException,
IllegalAccessException, InstantiationException {
EXCELParser excelParser = new EXCELParser();
List<Object> pl = excelParser
.parse(httpConnector.getInputSourceAsStream(URL), "eu.dnetlib.dhp.actionmanager.project.utils.ExcelTopic");
Assertions.assertEquals(3837, pl.size());
}
}

View File

@ -21,29 +21,29 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProgramme;
public class PrepareProgrammeTest {
public class PrepareH2020ProgrammeTest {
private static final ObjectMapper OBJECT_MAPPER = new ObjectMapper();
private static final ClassLoader cl = eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class
private static final ClassLoader cl = PrepareH2020ProgrammeTest.class
.getClassLoader();
private static SparkSession spark;
private static Path workingDir;
private static final Logger log = LoggerFactory
.getLogger(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class);
.getLogger(PrepareH2020ProgrammeTest.class);
@BeforeAll
public static void beforeAll() throws IOException {
workingDir = Files
.createTempDirectory(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class.getSimpleName());
.createTempDirectory(PrepareH2020ProgrammeTest.class.getSimpleName());
log.info("using work dir {}", workingDir);
SparkConf conf = new SparkConf();
conf.setAppName(eu.dnetlib.dhp.actionmanager.project.PrepareProgrammeTest.class.getSimpleName());
conf.setAppName(PrepareH2020ProgrammeTest.class.getSimpleName());
conf.setMaster("local[*]");
conf.set("spark.driver.host", "localhost");
@ -54,7 +54,7 @@ public class PrepareProgrammeTest {
spark = SparkSession
.builder()
.appName(PrepareProgrammeTest.class.getSimpleName())
.appName(PrepareH2020ProgrammeTest.class.getSimpleName())
.config(conf)
.getOrCreate();
}
@ -88,7 +88,60 @@ public class PrepareProgrammeTest {
Dataset<CSVProgramme> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(CSVProgramme.class));
Assertions.assertEquals(0, verificationDataset.filter("shortTitle =''").count());
Assertions.assertEquals(0, verificationDataset.filter("title =''").count());
Assertions.assertEquals(0, verificationDataset.filter("classification = ''").count());
Assertions
.assertEquals(
"Societal challenges | Smart, Green And Integrated Transport | CLEANSKY2 | IADP Fast Rotorcraft",
verificationDataset
.filter("code = 'H2020-EU.3.4.5.3.'")
.select("classification")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Euratom | Indirect actions | European Fusion Development Agreement",
verificationDataset
.filter("code = 'H2020-Euratom-1.9.'")
.select("classification")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Industrial leadership | Leadership in enabling and industrial technologies | Advanced manufacturing and processing | New sustainable business models",
verificationDataset
.filter("code = 'H2020-EU.2.1.5.4.'")
.select("classification")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Excellent science | Future and Emerging Technologies (FET) | FET Open",
verificationDataset
.filter("code = 'H2020-EU.1.2.1.'")
.select("classification")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Industrial leadership | Leadership in enabling and industrial technologies | Biotechnology",
verificationDataset
.filter("code = 'H2020-EU.2.1.4.'")
.select("classification")
.collectAsList()
.get(0)
.getString(0));
}
}

View File

@ -21,8 +21,7 @@ import org.slf4j.LoggerFactory;
import com.fasterxml.jackson.databind.ObjectMapper;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProgramme;
import eu.dnetlib.dhp.actionmanager.project.csvutils.CSVProject;
import eu.dnetlib.dhp.actionmanager.project.utils.CSVProject;
public class PrepareProjectTest {

View File

@ -4,12 +4,16 @@ package eu.dnetlib.dhp.actionmanager.project;
import java.io.IOException;
import java.nio.file.Files;
import java.nio.file.Path;
import java.util.List;
import org.apache.commons.io.FileUtils;
import org.apache.hadoop.io.Text;
import org.apache.spark.SparkConf;
import org.apache.spark.api.java.JavaRDD;
import org.apache.spark.api.java.JavaSparkContext;
import org.apache.spark.sql.Dataset;
import org.apache.spark.sql.Encoders;
import org.apache.spark.sql.Row;
import org.apache.spark.sql.SparkSession;
import org.junit.jupiter.api.AfterAll;
import org.junit.jupiter.api.Assertions;
@ -73,10 +77,13 @@ public class SparkUpdateProjectTest {
Boolean.FALSE.toString(),
"-programmePath",
getClass()
.getResource("/eu/dnetlib/dhp/actionmanager/project/preparedProgramme_whole.json.gz")
.getResource(
"/eu/dnetlib/dhp/actionmanager/project/preparedProgramme_classification_whole.json.gz")
.getPath(),
"-projectPath",
getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/prepared_projects.json").getPath(),
"-topicPath",
getClass().getResource("/eu/dnetlib/dhp/actionmanager/project/topic.json.gz").getPath(),
"-outputPath",
workingDir.toString() + "/actionSet"
});
@ -88,7 +95,231 @@ public class SparkUpdateProjectTest {
.map(value -> OBJECT_MAPPER.readValue(value._2().toString(), AtomicAction.class))
.map(aa -> ((Project) aa.getPayload()));
Assertions.assertEquals(14, tmp.count());
Assertions.assertEquals(15, tmp.count());
Dataset<Project> verificationDataset = spark.createDataset(tmp.rdd(), Encoders.bean(Project.class));
verificationDataset.createOrReplaceTempView("project");
Dataset<Row> execverification = spark
.sql(
"SELECT id, class classification, h2020topiccode, h2020topicdescription FROM project LATERAL VIEW EXPLODE(h2020classification) c as class ");
Assertions
.assertEquals(
"H2020-EU.3.4.7.",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("classification.h2020Programme.code")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"SESAR JU",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("classification.h2020Programme.description")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Societal challenges",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("classification.level1")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Smart, Green And Integrated Transport",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("classification.level2")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"SESAR JU",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("classification.level3")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Societal challenges | Smart, Green And Integrated Transport | SESAR JU",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("classification.classification")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"SESAR-ER4-31-2019",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("h2020topiccode")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"U-space",
execverification
.filter("id = '40|corda__h2020::2c7298913008865ba784e5c1350a0aa5'")
.select("h2020topicdescription")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"H2020-EU.1.3.2.",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("classification.h2020Programme.code")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Nurturing excellence by means of cross-border and cross-sector mobility",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("classification.h2020Programme.description")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Excellent science",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("classification.level1")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Marie Skłodowska-Curie Actions",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("classification.level2")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Nurturing excellence by means of cross-border and cross-sector mobility",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("classification.level3")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Excellent science | Marie Skłodowska-Curie Actions | Nurturing excellence by means of cross-border and cross-sector mobility",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("classification.classification")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"MSCA-IF-2019",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("h2020topiccode")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Individual Fellowships",
execverification
.filter("id = '40|corda__h2020::1a1f235fdd06ef14790baec159aa1202'")
.select("h2020topicdescription")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertTrue(
execverification
.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
.select("classification.h2020Programme.code")
.collectAsList()
.get(0)
.getString(0)
.equals("H2020-EU.2.1.4.") ||
execverification
.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
.select("classification.h2020Programme.code")
.collectAsList()
.get(1)
.getString(0)
.equals("H2020-EU.2.1.4."));
Assertions
.assertTrue(
execverification
.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
.select("classification.h2020Programme.code")
.collectAsList()
.get(0)
.getString(0)
.equals("H2020-EU.3.2.6.") ||
execverification
.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
.select("classification.h2020Programme.code")
.collectAsList()
.get(1)
.getString(0)
.equals("H2020-EU.3.2.6."));
Assertions
.assertEquals(
"Biotechnology",
execverification
.filter(
"id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5' and classification.h2020Programme.code = 'H2020-EU.2.1.4.'")
.select("classification.h2020Programme.description")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Bio-based Industries Joint Technology Initiative (BBI-JTI)",
execverification
.filter(
"id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5' and classification.h2020Programme.code = 'H2020-EU.3.2.6.'")
.select("classification.h2020Programme.description")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"BBI-2019-SO3-D4",
execverification
.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
.select("h2020topiccode")
.collectAsList()
.get(0)
.getString(0));
Assertions
.assertEquals(
"Demonstrate bio-based pesticides and/or biostimulant agents for sustainable increase in agricultural productivity",
execverification
.filter("id = '40|corda__h2020::a657c271769fec90b60c1f2dbc25f4d5'")
.select("h2020topicdescription")
.collectAsList()
.get(0)
.getString(0));
}
}

View File

@ -13,7 +13,7 @@ public class HttpConnectorTest {
private static final Log log = LogFactory.getLog(HttpConnectorTest.class);
private static HttpConnector connector;
private static final String URL = "http://cordis.europa.eu/data/reference/cordisref-H2020programmes.csv";
private static final String URL = "http://cordis.europa.eu/data/reference/cordisref-H2020topics.xlsx";
private static final String URL_MISCONFIGURED_SERVER = "https://www.alexandria.unisg.ch/cgi/oai2?verb=Identify";
private static final String URL_GOODSNI_SERVER = "https://air.unimi.it/oai/openaire?verb=Identify";

View File

@ -3,7 +3,7 @@
{"rcn":"229281","id":"896300","acronym":"STRETCH","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"Smart Textiles for RETrofitting and Monitoring of Cultural Heritage Buildings","startDate":"2020-09-01","endDate":"2022-08-31","projectUrl":"","objective":"This project aims to develop novel techniques using smart multifunctional materials for the combined seismic-plus-energy retrofitting, and Structural Health Monitoring (SHM) of the European cultural heritage buildings (CHB). The need for upgrading the existing old and CHB is becoming increasingly important for the EU countries, due to: (1) their poor structural performance during recent earthquakes (e.g. Italy, Greece) or other natural hazards (e.g. extreme weather conditions) that have resulted in significant economic losses, and loss of human lives; and (2) their low energy performance which increases significantly their energy consumption (buildings are responsible for 40% of EU energy consumption). Moreover, the SHM of the existing buildings is crucial for assessing continuously their structural integrity and thus to provide information for planning cost effective and sustainable maintenance decisions. Since replacing the old buildings with new is not financially feasible, and even it is not allowed for CHB, their lifetime extension requires considering simultaneously both structural and energy retrofitting. It is noted that the annual cost of repair and maintenance of existing European building stock is estimated to be about 50% of the total construction budget, currently standing at more than €300 billion. To achieve cost effectiveness, STRETCH explores a novel approach, which integrates technical textile reinforcement with thermal insulation systems and strain sensors to provide simultaneous structural-plus-energy retrofitting combined with SHM, tailored for masonry cultural heritage building envelopes. The effectiveness of the proposed retrofitting system will be validated experimentally and analytically. Moreover, draft guidelines and recommendations for determining future research on the use of smart composite materials for the concurrent retrofitting (structural-plus-energy) and SHM of the existing cultural heritage buildings envelopes will be proposed.","totalCost":"183473,28","ecMaxContribution":"183473,28","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-ST","coordinator":"JRC -JOINT RESEARCH CENTRE- EUROPEAN COMMISSION","coordinatorCountry":"BE","participants":"","participantCountries":"","subjects":""}
{"rcn":"229265","id":"892890","acronym":"RhythmicPrediction","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"Rhythmic prediction in speech perception: are our brain waves in sync with our native language?","startDate":"2021-01-01","endDate":"2022-12-31","projectUrl":"","objective":"Speech has rhythmic properties that widely differ across languages. When we listen to foreign languages, we may perceive them to be more musical, or rather more rap-like than our own. Even if we are unaware of it, the rhythm and melody of language, i.e. prosody, reflects its linguistic structure. On the one hand, prosody emphasizes content words and new information with stress and accents. On the other hand, it is aligned to phrase edges, marking them with boundary tones. Prosody hence helps the listener to focus on important words and to chunk sentences into phrases, and phrases into words. In fact, prosody is even used predictively, for instance to time the onset of the next word, the next piece of new information, or the total remaining length of the utterance, so the listener can seamlessly start their own speaking turn. \nSo, the listener, or rather their brain, is actively predicting when important speech events will happen, using prosody. How prosodic rhythms are exploited to predict speech timing, however, is unclear. No link between prosody and neural predictive processing has yet been empirically made. One hypothesis is that rhythm, such as the alternation of stressed and unstressed syllables, helps listeners time their attention. Similar behavior is best captured by the notion of an internal oscillator which can be set straight by attentional spikes. While neuroscientific evidence for the relation of neural oscillators to speech processing is starting to emerge, no link to the use of prosody nor predictive listening exists, yet. Furthermore, it is still unknown how native language knowledge affects cortical oscillations, and how oscillations are affected by cross-linguistic differences in rhythmic structure. The current project combines the standing knowledge of prosodic typology with the recent advances in neuroscience on cortical oscillations, to investigate the role of internal oscillators on native prosody perception, and active speech prediction.","totalCost":"191149,44","ecMaxContribution":"191149,44","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-ST","coordinator":"UNIVERSITE DE GENEVE","coordinatorCountry":"CH","participants":"","participantCountries":"","subjects":""}
{"rcn":"229235","id":"886828","acronym":"ASAP","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"Advanced Solutions for Asphalt Pavements","startDate":"2021-09-01","endDate":"2023-08-31","projectUrl":"","objective":"The Advanced Solutions for Asphalt Pavements (ASAP) project involves the development of a unique road paving technology which will use a bio-bitumen rejuvenator to rejuvenate aged asphalt bitumen. This technology will help to extend the lifespan of asphalt pavements (roads) and will reduce the environmental and economic impact of roads and road maintenance processes. Recycling and self-healing processes will replace fossil fuel dependent technology. Self-healing will involve rejuvenating aged asphalt bitumen using a bio-rejuvenator developed using microalgae oils (rejuvenating bio-oil). Microalgae has been selected because of its fast growth, versatility and ability to survive within hostile environments, such as wastewater. \n\nASAP will utilise microalgae, cultivated within the wastewater treatment process, as a source of the rejuvenating bio-oil. The solvent (Soxhlet) processes will be used to extract the oil from the microalgae. To ensure the efficiency of the oil extraction process, an ultrasonication process will be used to pre-treat the microalgae. The suitability of rejuvenating bio-oil as a replacement for the bitumen rejuvenator (fossil fuel based) will be ascertained via a series of standard bituminous and accelerated tests. A rejuvenator-binder diffusion numerical model will be developed, based on the Delft Lattice concrete diffusion model, to determine the conditions required for rejuvenation to occur and to ascertain the healing rate of the asphalt binder. These parameters will facilitate the selection and optimisation of the asphalt self-healing systems (specifically the amount of bio-oil rejuvenator and time required) to achieve full rejuvenation. \n\nThis novel approach will benchmark the effectiveness of this intervention against existing asphalt design and maintenance processes and assess feasibility. The ASAP project presents an opportunity to revolutionise road design and maintenance processes and reduce its environmental and financial costs.","totalCost":"187572,48","ecMaxContribution":"187572,48","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-ST","coordinator":"NEDERLANDSE ORGANISATIE VOOR TOEGEPAST NATUURWETENSCHAPPELIJK ONDERZOEK TNO","coordinatorCountry":"NL","participants":"","participantCountries":"","subjects":""}
{"rcn":null,"id":"886776","acronym":null,"status":null,"programme":"H2020-EU.2.1.4.","topics":null,"frameworkProgramme":"H2020","title":"BIO-Based pESTicides production for sustainable agriculture management plan","startDate":"2020-05-01","endDate":"2023-04-30","projectUrl":"","objective":"The BIOBESTicide project will validate and demonstrate the production of an effective and cost-efficient biopesticide. The demonstration will be based on an innovative bio-based value chain starting from the valorisation of sustainable biomasses, i.e. beet pulp and sugar molasses and will exploit the properties of the oomycete Pythium oligandrum strain I-5180 to increase natural plant defenses, to produce an highly effective and eco-friendly biopesticide solution for vine plants protection. \nBIOVITIS, the project coordinator, has developed, at laboratory level (TRL4), an effective method to biocontrol one of the major causes of worldwide vineyards destruction, the Grapevine Trunk Diseases (GTDs). The protection system is based on the oomycete Pythium oligandrum strain I-5180 that, at applied at optimal time and concentration, colonises the root of vines and stimulates the natural plant defences against GTDs, providing a protection that ranges between 40% and 60%. \nBIOBESTicide project will respond to the increasing demands for innovative solutions for crop protection agents, transferring the technology to a DEMO Plant able to produce more than 10 T of a high-quality oomycete-based biopesticide product per year (TRL7). \nThe BIOBESTicide project will validate the efficiency of the formulated product on vineyards of different geographical areas.\nTo assure the safety of products under both health and environmental points of view, a full and complete approval dossier for Pythium oligandrum strain I-5180 will be submitted in all the European countries. \nA Life Cycle Sustainability Assessment (LCSA) will be conducted to assess the environmental, economic and social impacts of the developed products.\nThe adoption of the effective and cost-efficient biopesticide will have significant impacts with a potential ROI of 30 % in just 5 years and a total EBITDA of more than € 6,400,000.","totalCost":"4402772,5","ecMaxContribution":"3069653","call":"H2020-BBI-JTI-2019","fundingScheme":"BBI-IA-DEMO","coordinator":"BIOVITIS","coordinatorCountry":"FR","participants":"MERCIER FRERES SARL;FUNDACION TECNALIA RESEARCH & INNOVATION;LAMBERTI SPA;EURION CONSULTING;CIAOTECH Srl;STOWARZYSZENIE ZACHODNIOPOMORSKI KLASTER CHEMICZNY ZIELONA CHEMIA;NORDZUCKER AG;INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT;INSTITUT FRANCAIS DE LA VIGNE ET DU VIN","participantCountries":"FR;ES;IT;PL;DE","subjects":""}
{"rcn":null,"id":"886776","acronym":null,"status":null,"programme":"H2020-EU.2.1.4.","topics":"BBI-2019-SO3-D4","frameworkProgramme":"H2020","title":"BIO-Based pESTicides production for sustainable agriculture management plan","startDate":"2020-05-01","endDate":"2023-04-30","projectUrl":"","objective":"The BIOBESTicide project will validate and demonstrate the production of an effective and cost-efficient biopesticide. The demonstration will be based on an innovative bio-based value chain starting from the valorisation of sustainable biomasses, i.e. beet pulp and sugar molasses and will exploit the properties of the oomycete Pythium oligandrum strain I-5180 to increase natural plant defenses, to produce an highly effective and eco-friendly biopesticide solution for vine plants protection. \nBIOVITIS, the project coordinator, has developed, at laboratory level (TRL4), an effective method to biocontrol one of the major causes of worldwide vineyards destruction, the Grapevine Trunk Diseases (GTDs). The protection system is based on the oomycete Pythium oligandrum strain I-5180 that, at applied at optimal time and concentration, colonises the root of vines and stimulates the natural plant defences against GTDs, providing a protection that ranges between 40% and 60%. \nBIOBESTicide project will respond to the increasing demands for innovative solutions for crop protection agents, transferring the technology to a DEMO Plant able to produce more than 10 T of a high-quality oomycete-based biopesticide product per year (TRL7). \nThe BIOBESTicide project will validate the efficiency of the formulated product on vineyards of different geographical areas.\nTo assure the safety of products under both health and environmental points of view, a full and complete approval dossier for Pythium oligandrum strain I-5180 will be submitted in all the European countries. \nA Life Cycle Sustainability Assessment (LCSA) will be conducted to assess the environmental, economic and social impacts of the developed products.\nThe adoption of the effective and cost-efficient biopesticide will have significant impacts with a potential ROI of 30 % in just 5 years and a total EBITDA of more than € 6,400,000.","totalCost":"4402772,5","ecMaxContribution":"3069653","call":"H2020-BBI-JTI-2019","fundingScheme":"BBI-IA-DEMO","coordinator":"BIOVITIS","coordinatorCountry":"FR","participants":"MERCIER FRERES SARL;FUNDACION TECNALIA RESEARCH & INNOVATION;LAMBERTI SPA;EURION CONSULTING;CIAOTECH Srl;STOWARZYSZENIE ZACHODNIOPOMORSKI KLASTER CHEMICZNY ZIELONA CHEMIA;NORDZUCKER AG;INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT;INSTITUT FRANCAIS DE LA VIGNE ET DU VIN","participantCountries":"FR;ES;IT;PL;DE","subjects":""}
{"rcn":null,"id":"886776","acronym":null,"status":null,"programme":"H2020-EU.3.2.6.","topics":"BBI-2019-SO3-D4","frameworkProgramme":"H2020","title":"BIO-Based pESTicides production for sustainable agriculture management plan","startDate":"2020-05-01","endDate":"2023-04-30","projectUrl":"","objective":"The BIOBESTicide project will validate and demonstrate the production of an effective and cost-efficient biopesticide. The demonstration will be based on an innovative bio-based value chain starting from the valorisation of sustainable biomasses, i.e. beet pulp and sugar molasses and will exploit the properties of the oomycete Pythium oligandrum strain I-5180 to increase natural plant defenses, to produce an highly effective and eco-friendly biopesticide solution for vine plants protection. \nBIOVITIS, the project coordinator, has developed, at laboratory level (TRL4), an effective method to biocontrol one of the major causes of worldwide vineyards destruction, the Grapevine Trunk Diseases (GTDs). The protection system is based on the oomycete Pythium oligandrum strain I-5180 that, at applied at optimal time and concentration, colonises the root of vines and stimulates the natural plant defences against GTDs, providing a protection that ranges between 40% and 60%. \nBIOBESTicide project will respond to the increasing demands for innovative solutions for crop protection agents, transferring the technology to a DEMO Plant able to produce more than 10 T of a high-quality oomycete-based biopesticide product per year (TRL7). \nThe BIOBESTicide project will validate the efficiency of the formulated product on vineyards of different geographical areas.\nTo assure the safety of products under both health and environmental points of view, a full and complete approval dossier for Pythium oligandrum strain I-5180 will be submitted in all the European countries. \nA Life Cycle Sustainability Assessment (LCSA) will be conducted to assess the environmental, economic and social impacts of the developed products.\nThe adoption of the effective and cost-efficient biopesticide will have significant impacts with a potential ROI of 30 % in just 5 years and a total EBITDA of more than € 6,400,000.","totalCost":"4402772,5","ecMaxContribution":"3069653","call":"H2020-BBI-JTI-2019","fundingScheme":"BBI-IA-DEMO","coordinator":"BIOVITIS","coordinatorCountry":"FR","participants":"MERCIER FRERES SARL;FUNDACION TECNALIA RESEARCH & INNOVATION;LAMBERTI SPA;EURION CONSULTING;CIAOTECH Srl;STOWARZYSZENIE ZACHODNIOPOMORSKI KLASTER CHEMICZNY ZIELONA CHEMIA;NORDZUCKER AG;INSTITUT NATIONAL DE RECHERCHE POUR L'AGRICULTURE, L'ALIMENTATION ET L'ENVIRONNEMENT;INSTITUT FRANCAIS DE LA VIGNE ET DU VIN","participantCountries":"FR;ES;IT;PL;DE","subjects":""}
{"rcn":"229276","id":"895426","acronym":"DisMoBoH","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"Dissecting the molecular building principles of locally formed transcriptional hubs","startDate":"2021-09-01","endDate":"2023-08-31","projectUrl":"","objective":"Numerous DNA variants have already been identified that modulate inter-individual molecular traits most prominently gene expression. However, since finding mechanistic interpretations relating genotype to phenotype has proven challenging, the focus has shifted to higher-order regulatory features, i.e. chromatin accessibility, transcription factor (TF) binding and 3D chromatin interactions. This revealed at least two enhancer types: “lead” enhancers in which the presence of genetic variants modulates the activity of entire chromatin domains, and “dependent” ones in which variants induce subtle changes, affecting DNA accessibility, but not transcription. Although cell type-specific TFs are likely important, it remains unclear which sequence features are required to establish such enhancer hierarchies, and under which circumstances genetic variation results in altered enhancer-promoter contacts and differential gene expression. Here, we propose to investigate the molecular mechanisms that link DNA variation to TF binding, chromatin topology, and gene expression response. We will leverage data on enhancer hierarchy and sequence-specific TF binding to identify the sequence signatures that define “lead” enhancers. The results will guide the design of a synthetic locus that serves as an in vivo platform to systematically vary the building blocks of local transcriptional units: i) DNA sequence including variations in TF binding site affinity and syntax, ii) molecular interactions between TFs, and iii) chromatin conformation. To validate our findings, we will perform optical reconstruction of chromatin architecture for a select number of DNA variants. By simultaneously perturbing co-dependent features, this proposal will provide novel mechanistic insights into the formation of local transcriptional hubs.","totalCost":"191149,44","ecMaxContribution":"191149,44","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-RI","coordinator":"ECOLE POLYTECHNIQUE FEDERALE DE LAUSANNE","coordinatorCountry":"CH","participants":"","participantCountries":"","subjects":""}
{"rcn":"229288","id":"898218","acronym":"devUTRs","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"Uncovering the roles of 5UTRs in translational control during early zebrafish development","startDate":"2021-09-01","endDate":"2023-08-31","projectUrl":"","objective":"Following fertilisation, metazoan embryos are transcriptionally silent, and embryogenesis is controlled by maternally deposited factors. Developmental progression requires the synthesis of new mRNAs and proteins in a coordinated fashion. Many posttranscriptional mechanisms regulate the fate of maternal mRNAs, but it is less understood how translational control shapes early embryogenesis. In eukaryotes, translation starts at the mRNA 5 end, consisting of the 5 cap and 5 untranslated region (UTR). Protein synthesis is primarily regulated at the translation initiation step by elements within the 5UTR. However, the role of 5UTRs in regulating the dynamics of mRNA translation during vertebrate embryogenesis remains unexplored. For example, all vertebrate ribosomal protein (RP) mRNAs harbor a conserved terminal oligopyrimidine tract (TOP) in their 5UTR. RP levels must be tightly controlled to ensure proper organismal development, but if and how the TOP motif mediates RP mRNA translational regulation during embryogenesis is unclear. Overall, we lack a systematic understanding of the regulatory information contained in 5UTRs. In this work, I aim to uncover the 5UTR in vivo rules for mRNA translational regulation during zebrafish embryogenesis. I propose to apply imaging and biochemical approaches to characterise the role of the TOP motif in RP mRNA translational regulation during embryogenesis and identify the trans-acting factor(s) that bind(s) to it (Aim 1). To systematically assess the contribution of 5UTRs to mRNA translational regulation during zebrafish embryogenesis, I will couple a massively parallel reporter assay of 5UTRs to polysome profiling (Aim 2). By integrating the translational behaviour of 5UTR reporters throughout embryogenesis with sequence-based regression models, I anticipate to uncover novel cis-regulatory elements in 5UTRs with developmental roles.","totalCost":"191149,44","ecMaxContribution":"191149,44","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-ST","coordinator":"UNIVERSITAT BASEL","coordinatorCountry":"CH","participants":"","participantCountries":"","subjects":""}
@ -13,4 +13,5 @@
{"rcn":"229239","id":"887259","acronym":"ALEHOOP","status":"SIGNED","programme":"H2020-EU.2.1.4.","topics":"BBI-2019-SO3-D3","frameworkProgramme":"H2020","title":"Biorefineries for the valorisation of macroalgal residual biomass and legume processing by-products to obtain new protein value chains for high-value food and feed applications","startDate":"2020-06-01","endDate":"2024-05-31","projectUrl":"","objective":"ALEHOOP provides the demonstration at pilot scale of both sustainable macroalgae and legume-based biorefineries for the recovery of low-cost dietary proteins from alga-based and plant residual biomass and their validation to meet market requirements of consumers and industry in the food and feed sectors. In these sectors, consumers are demanding affordable functional natural proteins from alternative sources and industry is demanding low-cost bio-based protein formulations with better performance and higher sustainability. \nCurrent protein demand for the 7.3 billion inhabitants of the world is approximately 202 Mt. Due to the rise in meat consumption more proteins are therefore required for animal feeding. To satisfy the current protein demand, Europe imports over 30 Mt of soy from the Americas each year mainly for animal feeding, entailing 95% dependency of EU on imported soy. Current sources of proteins are becoming unsustainable from an economic and environmental perspective for Europe resulting in concerns for sustainability and food security and leading to search for new alternative proteins. \nALEHOOP addresses the obtaining of proteins from green macroalgal blooms, brown seaweed by-products from algae processors and legume processing by-products (peas, lupines, beans and lentils) as alternative protein sources for animal feeding (case of green seaweed) and food applications (case of brown seaweed and legume by-products), since they are low cost and under-exploited biomass that do not compete with traditional food crops for space and resources. This will reduce EU´s dependency on protein imports and contribute to our raw material security. The new proteins will be validated in foods for elderly, sporty and overweight people, vegetarians and healthy consumers as well as for animal feed creating cross-sectorial interconnection between these value chains and supporting the projected business plan.","totalCost":"6718370","ecMaxContribution":"5140274,41","call":"H2020-BBI-JTI-2019","fundingScheme":"BBI-IA-DEMO","coordinator":"CONTACTICA S.L.","coordinatorCountry":"ES","participants":"CENTIV GMBH;ALGINOR ASA;FUNDACION TECNALIA RESEARCH & INNOVATION;INDUKERN,S.A.;ASOCIACION NACIONAL DE FABRICANTES DE CONSERVAS DE PESCADOS Y MARISCOS-CENTRO TECNICO NACIONAL DE CONSERVACION DE PRODUCTOS DE LA PESCA;BIOZOON GMBH;EIGEN VERMOGEN VAN HET INSTITUUT VOOR LANDBOUW- EN VISSERIJONDERZOEK;BIOSURYA SL;VYZKUMNY USTAV VETERINARNIHO LEKARSTVI;NUTRITION SCIENCES;TECHNOLOGICAL UNIVERSITY DUBLIN;GARLAN, S.COOP.;ISANATUR SPAIN SL;UNIVERSIDAD DE VIGO;UNIVERSIDAD DE CADIZ","participantCountries":"DE;NO;ES;BE;CZ;IE","subjects":""}
{"rcn":"229239","id":"887259","acronym":"ALEHOOP","status":"SIGNED","programme":"H2020-EU.3.2.6.","topics":"BBI-2019-SO3-D3","frameworkProgramme":"H2020","title":"Biorefineries for the valorisation of macroalgal residual biomass and legume processing by-products to obtain new protein value chains for high-value food and feed applications","startDate":"2020-06-01","endDate":"2024-05-31","projectUrl":"","objective":"ALEHOOP provides the demonstration at pilot scale of both sustainable macroalgae and legume-based biorefineries for the recovery of low-cost dietary proteins from alga-based and plant residual biomass and their validation to meet market requirements of consumers and industry in the food and feed sectors. In these sectors, consumers are demanding affordable functional natural proteins from alternative sources and industry is demanding low-cost bio-based protein formulations with better performance and higher sustainability. \nCurrent protein demand for the 7.3 billion inhabitants of the world is approximately 202 Mt. Due to the rise in meat consumption more proteins are therefore required for animal feeding. To satisfy the current protein demand, Europe imports over 30 Mt of soy from the Americas each year mainly for animal feeding, entailing 95% dependency of EU on imported soy. Current sources of proteins are becoming unsustainable from an economic and environmental perspective for Europe resulting in concerns for sustainability and food security and leading to search for new alternative proteins. \nALEHOOP addresses the obtaining of proteins from green macroalgal blooms, brown seaweed by-products from algae processors and legume processing by-products (peas, lupines, beans and lentils) as alternative protein sources for animal feeding (case of green seaweed) and food applications (case of brown seaweed and legume by-products), since they are low cost and under-exploited biomass that do not compete with traditional food crops for space and resources. This will reduce EU´s dependency on protein imports and contribute to our raw material security. The new proteins will be validated in foods for elderly, sporty and overweight people, vegetarians and healthy consumers as well as for animal feed creating cross-sectorial interconnection between these value chains and supporting the projected business plan.","totalCost":"6718370","ecMaxContribution":"5140274,41","call":"H2020-BBI-JTI-2019","fundingScheme":"BBI-IA-DEMO","coordinator":"CONTACTICA S.L.","coordinatorCountry":"ES","participants":"CENTIV GMBH;ALGINOR ASA;FUNDACION TECNALIA RESEARCH & INNOVATION;INDUKERN,S.A.;ASOCIACION NACIONAL DE FABRICANTES DE CONSERVAS DE PESCADOS Y MARISCOS-CENTRO TECNICO NACIONAL DE CONSERVACION DE PRODUCTOS DE LA PESCA;BIOZOON GMBH;EIGEN VERMOGEN VAN HET INSTITUUT VOOR LANDBOUW- EN VISSERIJONDERZOEK;BIOSURYA SL;VYZKUMNY USTAV VETERINARNIHO LEKARSTVI;NUTRITION SCIENCES;TECHNOLOGICAL UNIVERSITY DUBLIN;GARLAN, S.COOP.;ISANATUR SPAIN SL;UNIVERSIDAD DE VIGO;UNIVERSIDAD DE CADIZ","participantCountries":"DE;NO;ES;BE;CZ;IE","subjects":""}
{"rcn":"229258","id":"892834","acronym":"DENVPOC","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"qPCR Microfluidics point-of-care platform for dengue diagnosis","startDate":"2020-05-18","endDate":"2022-05-17","projectUrl":"","objective":"As a result of Global climate change and fast urbanization, global outbreaks of Dengue (DENV)/ Zika(ZIKV)/Chikungunya(CHIKV) virus have the potential to occur. The most common pathway of these infections in humans is through the female Aedes mosquito vector. DENV is an exanthematous febrile disease with varied clinical manifestations and progressions . Due to similarities in symptoms between DENV and ZIKV and CHIKV, it is difficult to make a differential diagnosis, impeding appropriate, timely medical intervention. Furthermore, cross-reactivity with ZIKV, which was recently related to microcephaly, is a serious issue. In 2016, in Brazil alone, there were 4180 microcephaly cases reported instead of 163 cases, more in line with yearly expected projections , , Thus, the sooner an accurate diagnostic which differentiates DENV from the other manifestations is critical; most especially at the early stages of the infection, to have a reliable diagnosis in pregnant women. In 2016, the OMS emergency committee declared that the outbreaks and the potentially resultant neurological disorders in Brazil were an important international state of emergency in public health, as a result of the associated secondary effects; these diseases became a Global concern. This project allows developing a highly and fast Multiplex qPCR POC platform by using FASTGENE technology with a minimal amount of patient serotype. It would reduce the time of analysis (30 to 90 for a standard) and costs. Additionally, the sample preprocessing and thermalization will shorten real-time PCR amplification time and will be integrated within the microfluidic systems. This platform can result in a commercialized product whereupon a main market target would be pregnant women and people living or traveling through/from outbreak risk areas.","totalCost":"196707,84","ecMaxContribution":"196707,84","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-SE","coordinator":"BFORCURE","coordinatorCountry":"FR","participants":"","participantCountries":"","subjects":""}
{"rcn":"229280","id":"895716","acronym":"DoMiCoP","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"The Diffusion of Migration Control Practice. Actors, Processes and Effects.","startDate":"2021-03-01","endDate":"2023-02-28","projectUrl":"","objective":"DoMiCoP develops new understandings and perspectives to study migration control in practice in the European Union by asking one main question: how and why do communities of practice develop and diffuse the knowledge required to put migration control into action? Unlike the nexus between expert knowledge, epistemic communities and policy formulation, the nexus between everyday knowledge, communities of practice and policy implementation has not yet received systematic scholarly attention. My project bridges that gap by focusing on intermediate arenas in which communities of practice take shape most notably the meetings and trainings that gather state and non-state actors involved in putting asylum, detention and removal into practice. By building on field-based methodologies (interviews and participant observations), DoMiCoP sheds ethnographic light on the role that learning from abroad plays in the implementation of migration control in the EU. My projects aim is threefold: 1) Identifying arenas at intermediate levels in which communities of practice take shape; 2) Analysing the communities of practice by focusing on the configurations of actors and organizations involved, the motivations underlying their involvement, the process of knowledge development in interaction, the conflicts and negotiations; 3) Revealing the role of non-state organizations (private for profit and not-for-profit). From a theoretical point of view, this project goes beyond the classical view of the implementation as a test to assess the effectiveness of policy transfers towards an analysis of policy transfer at that level of policy-making. From an empirical point of view, the project expands knowledge about less-studied venues of policy-making and provides original thick descriptions. From a methodological point of view, the project engages with qualitative methods for the study of policy diffusion and aims at responding to their main challenges through participant observation.","totalCost":"163673,28","ecMaxContribution":"163673,28","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-ST","coordinator":"EUROPEAN UNIVERSITY INSTITUTE","coordinatorCountry":"IT","participants":"","participantCountries":"","subjects":""}
{"rcn":"229280","id":"895716","acronym":"DoMiCoP","status":"SIGNED","programme":"H2020-EU.1.3.2.","topics":"MSCA-IF-2019","frameworkProgramme":"H2020","title":"The Diffusion of Migration Control Practice. Actors, Processes and Effects.","startDate":"2021-03-01","endDate":"2023-02-28","projectUrl":"","objective":"DoMiCoP develops new understandings and perspectives to study migration control in practice in the European Union by asking one main question: how and why do communities of practice develop and diffuse the knowledge required to put migration control into action? Unlike the nexus between expert knowledge, epistemic communities and policy formulation, the nexus between everyday knowledge, communities of practice and policy implementation has not yet received systematic scholarly attention. My project bridges that gap by focusing on intermediate arenas in which communities of practice take shape most notably the meetings and trainings that gather state and non-state actors involved in putting asylum, detention and removal into practice. By building on field-based methodologies (interviews and participant observations), DoMiCoP sheds ethnographic light on the role that learning from abroad plays in the implementation of migration control in the EU. My projects aim is threefold: 1) Identifying arenas at intermediate levels in which communities of practice take shape; 2) Analysing the communities of practice by focusing on the configurations of actors and organizations involved, the motivations underlying their involvement, the process of knowledge development in interaction, the conflicts and negotiations; 3) Revealing the role of non-state organizations (private for profit and not-for-profit). From a theoretical point of view, this project goes beyond the classical view of the implementation as a test to assess the effectiveness of policy transfers towards an analysis of policy transfer at that level of policy-making. From an empirical point of view, the project expands knowledge about less-studied venues of policy-making and provides original thick descriptions. From a methodological point of view, the project engages with qualitative methods for the study of policy diffusion and aims at responding to their main challenges through participant observation.","totalCost":"163673,28","ecMaxContribution":"163673,28","call":"H2020-MSCA-IF-2019","fundingScheme":"MSCA-IF-EF-ST","coordinator":"EUROPEAN UNIVERSITY INSTITUTE","coordinatorCountry":"IT","participants":"","participantCountries":"","subjects":""}
{"rcn":"230066","id":"883730","acronym":"SOLSPACE","status":"SIGNED","programme":"H2020-EU.1.1.","topics":"ERC-2019-ADG","frameworkProgramme":"H2020","title":"Enhancing Global Clean Energy Services Using Orbiting Solar Reflectors", "startDate":"2021-03-01","endDate":"2025-11-30","projectUrl":"","objective":"fake", "totalCost":"2496392","ecMaxContribution":"2496392","call":"ERC-2019-ADG","fundingScheme":"ERC-ADG","coordinator":"UNIVERSITY OF GLASGOW","coordinatorCountry":"UK","participants":"","participantCountries":"","subjects":""}

View File

@ -31,6 +31,10 @@
<artifactId>elasticsearch-hadoop</artifactId>
</dependency>
<dependency>
<groupId>org.apache.httpcomponents</groupId>
<artifactId>httpclient</artifactId>
</dependency>
<dependency>
<groupId>eu.dnetlib.dhp</groupId>

View File

@ -0,0 +1,31 @@
package eu.dnetlib.dhp.broker.model;
import java.io.Serializable;
public class ConditionParams implements Serializable {
/**
*
*/
private static final long serialVersionUID = 2719901844537516110L;
private String value;
private String otherValue;
public String getValue() {
return value;
}
public void setValue(final String value) {
this.value = value;
}
public String getOtherValue() {
return otherValue;
}
public void setOtherValue(final String otherValue) {
this.otherValue = otherValue;
}
}

View File

@ -2,7 +2,6 @@
package eu.dnetlib.dhp.broker.model;
import java.text.ParseException;
import java.util.Date;
import java.util.List;
import java.util.stream.Collectors;
@ -19,30 +18,29 @@ public class EventFactory {
private final static String PRODUCER_ID = "OpenAIRE";
private static final int TTH_DAYS = 365;
private final static String[] DATE_PATTERNS = {
"yyyy-MM-dd"
};
public static Event newBrokerEvent(final UpdateInfo<?> updateInfo) {
final long now = new Date().getTime();
final Event res = new Event();
final MappedFields map = createMapFromResult(updateInfo);
final String eventId = calculateEventId(
updateInfo.getTopicPath(), updateInfo.getTarget().getOpenaireId(), updateInfo.getHighlightValueAsString());
updateInfo.getTopicPath(), updateInfo.getTargetDs().getOpenaireId(), updateInfo
.getTarget()
.getOpenaireId(),
updateInfo.getHighlightValueAsString());
res.setEventId(eventId);
res.setProducerId(PRODUCER_ID);
res.setPayload(updateInfo.asBrokerPayload().toJSON());
res.setMap(map);
res.setTopic(updateInfo.getTopicPath());
res.setCreationDate(now);
res.setExpiryDate(calculateExpiryDate(now));
res.setCreationDate(0l);
res.setExpiryDate(Long.MAX_VALUE);
res.setInstantMessage(false);
return res;
@ -93,15 +91,15 @@ public class EventFactory {
return map;
}
private static String calculateEventId(final String topic, final String publicationId, final String value) {
private static String calculateEventId(final String topic,
final String dsId,
final String publicationId,
final String value) {
return "event-"
+ DigestUtils.md5Hex(topic).substring(0, 6) + "-"
+ DigestUtils.md5Hex(publicationId).substring(0, 8) + "-"
+ DigestUtils.md5Hex(value).substring(0, 8);
}
private static long calculateExpiryDate(final long now) {
return now + TTH_DAYS * 24 * 60 * 60 * 1000;
+ DigestUtils.md5Hex(topic).substring(0, 4) + "-"
+ DigestUtils.md5Hex(dsId).substring(0, 4) + "-"
+ DigestUtils.md5Hex(publicationId).substring(0, 7) + "-"
+ DigestUtils.md5Hex(value).substring(0, 5);
}
private static long parseDateTolong(final String date) {

View File

@ -0,0 +1,37 @@
package eu.dnetlib.dhp.broker.model;
import java.io.Serializable;
import java.util.ArrayList;
import java.util.List;
import com.fasterxml.jackson.annotation.JsonIgnoreProperties;
@JsonIgnoreProperties(ignoreUnknown = true)
public class MapCondition implements Serializable {
/**
*
*/
private static final long serialVersionUID = -7137490975452466813L;
private String field;
private List<ConditionParams> listParams = new ArrayList<>();
public String getField() {
return field;
}
public void setField(final String field) {
this.field = field;
}
public List<ConditionParams> getListParams() {
return listParams;
}
public void setListParams(final List<ConditionParams> listParams) {
this.listParams = listParams;
}
}

View File

@ -0,0 +1,93 @@
package eu.dnetlib.dhp.broker.model;
import java.io.Serializable;
public class Notification implements Serializable {
/**
*
*/
private static final long serialVersionUID = -1770420972526995727L;
private String notificationId;
private String subscriptionId;
private String producerId;
private String eventId;
private String topic;
private Long date;
private String payload;
private MappedFields map;
public String getNotificationId() {
return notificationId;
}
public void setNotificationId(final String notificationId) {
this.notificationId = notificationId;
}
public String getSubscriptionId() {
return subscriptionId;
}
public void setSubscriptionId(final String subscriptionId) {
this.subscriptionId = subscriptionId;
}
public String getProducerId() {
return producerId;
}
public void setProducerId(final String producerId) {
this.producerId = producerId;
}
public String getEventId() {
return eventId;
}
public void setEventId(final String eventId) {
this.eventId = eventId;
}
public String getTopic() {
return topic;
}
public void setTopic(final String topic) {
this.topic = topic;
}
public String getPayload() {
return payload;
}
public void setPayload(final String payload) {
this.payload = payload;
}
public MappedFields getMap() {
return map;
}
public void setMap(final MappedFields map) {
this.map = map;
}
public Long getDate() {
return date;
}
public void setDate(final Long date) {
this.date = date;
}
}

View File

@ -0,0 +1,25 @@
package eu.dnetlib.dhp.broker.model;
import java.io.Serializable;
import eu.dnetlib.broker.api.ShortEventMessage;
public class ShortEventMessageWithGroupId extends ShortEventMessage implements Serializable {
/**
*
*/
private static final long serialVersionUID = 4704889388757626630L;
private String group;
public String getGroup() {
return group;
}
public void setGroup(final String group) {
this.group = group;
}
}

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