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5263 Commits

Author SHA1 Message Date
Lampros Smyrnaios 54e11b6a43 Improve performance and efficiency by rewriting the creation process of "publication", "project", "dataset", "datasource", "software", "otherresearchproduct" and "result" tables, to be performed in a single query, for each one. 2024-07-03 13:03:15 +03:00
Lampros Smyrnaios fe2275a9b0 Merge branch 'beta' of https://code-repo.d4science.org/antonis.lempesis/dnet-hadoop into convert_hive_to_spark_actions 
# Conflicts:
#	dhp-workflows/dhp-stats-update/src/main/resources/eu/dnetlib/dhp/oa/graph/stats/oozie_app/scripts/step14.sql
 2024-06-25 20:17:47 +03:00
Lampros Smyrnaios 66cd28f70a - Fix not using the "export HADOOP_USER_NAME" statement in "createPDFsAggregated.sh", which caused permission-issues when creating tables with Impala. 
- Remove unused "--user" parameter in "impala-shell" calls.
- Code polishing.
 2024-06-20 14:33:46 +03:00
Lampros Smyrnaios c6b1ab2a18 Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-06-20 14:33:05 +03:00
Miriam Baglioni d35edac212 [IrishFunderList]make changed according to 9635 comment 20, 21, 22 and 23 2024-06-20 12:28:28 +02:00
Miriam Baglioni 6421f8fece Merge remote-tracking branch 'origin/beta' into beta 2024-06-19 11:12:15 +02:00
Miriam Baglioni ac270f795b [IrishFunderList]make changed according to 9635 comment 14, 15 and 16 2024-06-19 11:11:52 +02:00
Lampros Smyrnaios 236aed8954 Merge remote-tracking branch 'origin/beta' into beta 2024-06-18 17:12:35 +03:00
Claudio Atzori dd541f8cf5 Merge pull request 'Miscellaneous updates to the copying operation to Impala Cluster.' (#447) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#447
 2024-06-18 15:52:30 +02:00
Lampros Smyrnaios ff335578ea Merge branch 'beta' of https://code-repo.d4science.org/D-Net/dnet-hadoop into beta 2024-06-18 14:52:31 +03:00
Lampros Smyrnaios 285416c74e Merge branch 'beta' into beta 2024-06-18 13:50:38 +02:00
Lampros Smyrnaios 3095047e5e Miscellaneous updates to the copying operation to Impala Cluster: 
- Fix not breaking out of the VIEWS-infinite-loop when the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" is set to "false".
- Exit the script when no HDFS-active-node was found, independently of the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR".
- Fix view_name-recognition in a log-message, by using the more advanced "Perl-Compatible Regular Expressions" in "grep".
- Add error-handling for "compute stats" errors.
 2024-06-18 14:40:41 +03:00
Antonis Lempesis 0456f1b788 Merge remote-tracking branch 'origin/beta' into beta 2024-06-14 15:11:30 +03:00
Antonis Lempesis 38636942c7 filtering out deletedbyinference and invinsible results from accessroute 2024-06-14 15:11:19 +03:00
Lampros Smyrnaios d942a1101b Miscellaneous updates to the copying operation to Impala Cluster: 
- Show some counts and the elapsed time for various sub-tasks.
- Code polishing.
 2024-06-14 12:14:38 +03:00
Giambattista Bloisi 9bf2bda1c6 Fix: next returned a null value at end of stream 2024-06-12 13:28:51 +02:00
Giambattista Bloisi d90cb099b8 Fix for paginationStart parameter management 2024-06-11 20:23:44 +02:00
Claudio Atzori 11fe3a4fe0 [graph resolution] use sparkExecutorMemory to define also the memoryOverhead 2024-06-11 14:21:17 +02:00
Claudio Atzori a8d68c9d29 avoid NPEs 2024-06-11 14:19:24 +02:00
Miriam Baglioni 8fe934810f Merge remote-tracking branch 'origin/beta' into beta 2024-06-11 10:28:51 +02:00
Miriam Baglioni 9da006e98c [SDGFoSActionSet]remove datainfo for the result. It is not needed (qualifier.classid = UPDATE) useless since subject do not go at the level of the instance 2024-06-11 10:28:32 +02:00
Giambattista Bloisi 85c1eae7e0 Fixes for pagination strategy looping at end of download 2024-06-10 19:03:58 +02:00
Claudio Atzori b0eba210c0 [actionset promotion] use sparkExecutorMemory to define also the memoryOverhead 2024-06-10 16:15:24 +02:00
Claudio Atzori 3776327a8c hostedby patching to work with the updated Crossref contents, resolved conflict 2024-06-10 15:24:12 +02:00
Claudio Atzori 0139f23d66 Merge pull request 'organization type from OpenOrgs' (#445) from import_openorg_type into beta 
Reviewed-on: D-Net/dnet-hadoop#445
 2024-06-07 12:17:31 +02:00
Michele Artini c726572418 changed some parameters in OSF test 2024-06-07 12:03:26 +02:00
Claudio Atzori ec79405cc9 [graph raw] set organization type from openorgs 2024-06-07 11:30:31 +02:00
Miriam Baglioni 1477406ecc [bulkTag] fixed issue that made project disappear in graph_10_enriched 2024-06-06 10:45:41 +02:00
Claudio Atzori 92c3abd5a4 [graph cleaning] use sparkExecutorMemory to define also the memoryOverhead 2024-06-06 10:44:33 +02:00
Claudio Atzori ce2364743a applying changes from PR#442: Fix for missing collectedfrom after dedup 2024-06-06 10:43:43 +02:00
Claudio Atzori f70dc76b61 minor 2024-06-06 10:43:10 +02:00
Claudio Atzori 73bd1938a5 [graph2hive] use sparkExecutorMemory to define also the memoryOverhead 2024-06-05 12:17:35 +02:00
Claudio Atzori da5c1e73a4 Merge pull request 'Irish oaipmh exporter' (#443) from irish-oaipmh-exporter into beta 
Reviewed-on: D-Net/dnet-hadoop#443
 2024-06-05 10:55:09 +02:00
Claudio Atzori 81090ad593 [IE OAIPHM] added oozie workflow, minor changes, code formatting 2024-06-05 10:03:33 +02:00
Claudio Atzori a02f3f0d2b code formatting 2024-05-30 10:21:18 +02:00
Alessia Bardi eadfd8d71d Merge pull request 'Updated XMLIterator for splitting on different nodes' (#436) from dblp_collection_plugin into beta 
Reviewed-on: D-Net/dnet-hadoop#436
 2024-05-29 16:05:06 +02:00
Alessia Bardi 05ee783c07 Merge branch 'beta' into dblp_collection_plugin 2024-05-29 16:04:39 +02:00
Alessia Bardi fe9fb59c90 Merge pull request 'Rest collector plugin on hadoop supports a new param to pass request headers' (#441) from rest-collector-request-header-map into beta 
Reviewed-on: D-Net/dnet-hadoop#441
 2024-05-29 15:54:39 +02:00
Claudio Atzori c272c4ad68 code formatting 2024-05-29 15:50:07 +02:00
Alessia Bardi c5f4da16a4 Merge branch 'beta' into rest-collector-request-header-map 2024-05-29 15:46:23 +02:00
Alessia 1b165a14a0 Rest collector plugin on hadoop supports a new param to pass request headers 2024-05-29 15:41:36 +02:00
Michele Artini e996787be2 OSF test 2024-05-29 15:05:17 +02:00
Claudio Atzori 62716141c5 Merge pull request 'Miscellaneous updates to the copying operation to Impala Cluster' (#440) from antonis.lempesis/dnet-hadoop:beta into beta 
Reviewed-on: D-Net/dnet-hadoop#440
 2024-05-29 14:34:51 +02:00
Miriam Baglioni 5d85b70e1f [NOAMI] removed Ireland funder id 501100011103. ticket 9635 2024-05-29 11:55:00 +02:00
Lampros Smyrnaios a644a6f4fe Catch Spark-sql errors and show a log with the statement that failed. 2024-05-29 12:10:11 +03:00
Lampros Smyrnaios e3f28338c1 Miscellaneous updates to the copying operation to Impala Cluster: 
- Assign the WRITE and EXECUTE permissions to the DBs' HDFS-directories, in order to be able to create tables on top of them, in the Impala Cluster.
- Make sure the "copydb" function returns early, when it encounters a fatal error, while respecting the "SHOULD_EXIT_WHOLE_SCRIPT_UPON_ERROR" config.
 2024-05-28 17:51:45 +03:00
Giambattista Bloisi 73316d8c83 Add jaxb and jaxws dependencies when compiling with spark-34 profile as they are required to run with jdk > 8 2024-05-28 14:14:51 +02:00
Miriam Baglioni 75d5ddb999 Update to include a blackList that filters out the results we know are wrongly associated to IE - update workflow definition - the blacklist parameter 2024-05-27 12:01:28 +02:00
Miriam Baglioni 87c9c61b41 Update to include a blackList that filters out the results we know are wrongly associated to IE - refactoring 2024-05-27 12:01:16 +02:00
Miriam Baglioni b55fed09f8 Update to include a blackList that filters out the results we know are wrongly associated to IE 2024-05-27 12:01:01 +02:00