updated Analytics Resovler
fixing CkanCatalogueConfigurationsReader git-svn-id: http://svn.research-infrastructures.eu/public/d4science/gcube/trunk/data-transfer/uri-resolver@174816 82a268e6-3cf1-43bd-a215-b396298e98cf
This commit is contained in:
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ca997f7ce7
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@ -2,6 +2,7 @@ package org.gcube.datatransfer.resolver;
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import javax.ws.rs.Path;
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import org.gcube.data.analysis.dminvocation.model.DataMinerInvocation;
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import org.gcube.datatransfer.resolver.init.UriResolverSmartGearManagerInit;
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import org.gcube.datatransfer.resolver.requesthandler.TokenSetter;
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import org.gcube.datatransfer.resolver.services.CatalogueResolver;
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@ -15,6 +16,7 @@ public class UriResolver extends ResourceConfig {
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public UriResolver() {
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// Register all resources present under the package.
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packages(CatalogueResolver.class.getPackage().getName(), TokenSetter.class.getPackage().getName());
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packages(DataMinerInvocation.class.getPackage().getName());
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}
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}
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@ -69,8 +69,11 @@ public class CkanCatalogueConfigurationsReader {
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try{
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URI toURL = new URI(privatePortletURL);
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String publicURL = privatePortletURL.startsWith("https://")?"https://"+toURL.getHost():"http://"+toURL.getHost();
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String realiveURLToPublicCtlg = getRelativeURLToCatalogue();
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links.setPublicPortletURL(publicURL+"/"+realiveURLToPublicCtlg);
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//It returns the string "catalogue"
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String prefixToPublicCtlg = getRelativeURLToCatalogue();
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//Replacing for example "ckan-bb" with "catalogue-bb"
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String publicCatalogueName = extractCatalogueName(privatePortletURL, prefixToPublicCtlg);
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links.setPublicPortletURL(publicURL+"/"+publicCatalogueName);
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}catch(Exception e){
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logger.warn("Erron on generating public catalogue URL from private URL: "+privatePortletURL, e);
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}
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@ -84,43 +87,31 @@ public class CkanCatalogueConfigurationsReader {
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}
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return links;
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}
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/**
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* Extract catalogue name.
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*
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* @param privateCKANCatalogueURL the private ckan catalogue url
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* @param replaceCKANWith the replace ckan with
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* @return the string
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*/
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public static String extractCatalogueName(String privateCKANCatalogueURL, String replaceCKANWith){
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/*
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String privatePortletURL = getPortletUrlForScopeFromIS();
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links.setPrivatePortletURL(privatePortletURL);
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//Building public URL from private portlet URL
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try{
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URI toURL = new URI(privatePortletURL);
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String publicURL = privatePortletURL.startsWith("https://")?"https://"+toURL.getHost():"http://"+toURL.getHost();
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String realiveURLToPublicCtlg = getRelativeURLToCatalogue();
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links.setPublicPortletURL(publicURL+"/"+realiveURLToPublicCtlg);
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}catch(Exception e){
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logger.warn("Erron on generating public catalogue URL from private URL: "+privatePortletURL, e);
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}
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//Getting the CKAN Portet URL for current scope
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try{
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String ckanPortletURL = CatalogueServiceEndpointReader.getCatalogueUrl();
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links.setCkanURL(ckanPortletURL);
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}catch(Exception e){
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logger.warn("Erron on getting CKAN Porlet URL for scope: "+ScopeProvider.instance.get(), e);
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}
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return links;
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*/
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privateCKANCatalogueURL = privateCKANCatalogueURL.replaceFirst("https://ckan", replaceCKANWith);
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privateCKANCatalogueURL = privateCKANCatalogueURL.replaceFirst("http://ckan", replaceCKANWith);
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return privateCKANCatalogueURL.substring(0,privateCKANCatalogueURL.indexOf("."));
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}
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/**
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* Retrieve a ckan dataset given its id. The CkanClient is used, without api key. The result is null also when the dataset is private.
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* @param datasetIdorName
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* @param catalogueURL
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* @return
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* @throws Exception
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*
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* @param datasetIdorName the dataset idor name
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* @param catalogueURL the catalogue url
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* @return the dataset
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* @throws Exception the exception
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*/
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public static CkanDataset getDataset(String datasetIdorName, String catalogueURL) throws Exception{
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logger.info("Performing request GET CKAN dataset with id: " + datasetIdorName);
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@ -5,15 +5,10 @@ package org.gcube.datatransfer.resolver.services;
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import java.io.ByteArrayOutputStream;
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import java.io.File;
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import java.io.FileInputStream;
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import java.io.IOException;
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import java.io.UnsupportedEncodingException;
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import java.net.URLEncoder;
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import java.net.URL;
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import java.nio.file.Files;
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import java.text.SimpleDateFormat;
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import java.util.ArrayList;
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import java.util.Date;
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import java.util.List;
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import java.util.Map;
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import javax.servlet.http.HttpServletRequest;
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import javax.ws.rs.Consumes;
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@ -25,105 +20,67 @@ import javax.ws.rs.core.MediaType;
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import javax.ws.rs.core.Response;
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import javax.xml.bind.JAXBException;
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import org.apache.commons.io.IOUtils;
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import org.gcube.common.authorization.library.provider.SecurityTokenProvider;
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import org.gcube.common.scope.api.ScopeProvider;
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import org.gcube.common.scope.impl.ScopeBean;
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import org.gcube.common.scope.impl.ScopeBean.Type;
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import org.gcube.common.storagehub.client.dsl.FileContainer;
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import org.gcube.common.storagehub.client.dsl.StorageHubClient;
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import org.gcube.data.analysis.dminvocation.ActionType;
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import org.gcube.data.analysis.dminvocation.DataMinerInvocationManager;
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import org.gcube.data.analysis.dminvocation.model.DataMinerInputParams;
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import org.gcube.data.analysis.dminvocation.model.DataMinerInvocation;
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import org.gcube.data.analysis.dminvocation.model.DataMinerParam;
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import org.gcube.data.analysis.dminvocation.model.DataMinerParameters;
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import org.gcube.datatransfer.resolver.dataminer.DataMinerRequest;
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import org.gcube.datatransfer.resolver.requesthandler.TokenSetter;
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import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
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import org.gcube.datatransfer.resolver.util.Util;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.xml.sax.SAXException;
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/**
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* The Class DataMinerResolver.
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* The Class AnalyticsCreateResolver.
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*
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* @author Francesco Mangiacrapa francesco.mangiacrapa@isti.cnr.it
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* Nov 28, 2018
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* @author Francesco Mangiacrapa at ISTI-CNR (francesco.mangiacrapa@isti.cnr.it)
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* Dec 12, 2018
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*/
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@Path("/analytics")
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public class AnalyticsCreateResolver {
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/**
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*
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*/
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private static final String DATAMINER_INVOCATION_MODEL = "dim";
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/**
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*
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*/
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private static final String UTF_8 = "UTF-8";
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private static Logger logger = LoggerFactory.getLogger(AnalyticsCreateResolver.class);
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private static String helpURI = "https://wiki.gcube-system.org/gcube/URI_Resolver#Analitycs_Resolver";
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private static SimpleDateFormat dateFormat = new SimpleDateFormat("yyyy-MM-dd_HH:mm:ss.SSS");
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/**
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* Post catalogue.
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*
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* @param req the req
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* @param jsonRequest the json request
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* @param body the body
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* @return the response
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*/
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@POST
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@Path("/create")
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@Consumes(MediaType.APPLICATION_JSON)
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@Consumes(MediaType.TEXT_PLAIN)
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@Produces(MediaType.TEXT_PLAIN)
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public Response postCatalogue(@Context HttpServletRequest req, DataMinerRequest jsonRequest) {
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public Response postCatalogue(@Context HttpServletRequest req, String body) {
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logger.info(this.getClass().getSimpleName()+" POST starts...");
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logger.info("body is: "+body);
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logger.info("The body contains the request: "+jsonRequest.toString());
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//SIMULATING SMART GEAR BEHAVIOUR - VALIDATING TOKEN
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/*String contextToken = req.getParameter("gcube-token");
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if(contextToken==null || contextToken.isEmpty()){
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contextToken = req.getHeader("gcube-token");
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logger.info("Read context token from HTTP header...");
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}
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if(contextToken==null || contextToken.isEmpty()){
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logger.error("Context Token not passed");
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ExceptionManager.throwUnauthorizedException(req, "You are not authorized. You must pass a gcube-token of VRE", this.getClass(), helpURI);
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}
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String scope = "";
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DataMinerInvocation jsonRequest = null;
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try {
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AuthorizationEntry entry = authorizationService().get(contextToken);
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scope = entry.getContext();
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jsonRequest = DataMinerInvocationManager.getInstance().unmarshaling(IOUtils.toInputStream(body), org.gcube.data.analysis.dminvocation.MediaType.ApplicationJSON, true);
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}
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catch (Exception e1) {
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logger.error("Unresolved token: "+contextToken, e1);
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ExceptionManager.throwUnauthorizedException(req, "Your token "+contextToken+" seems not valid, it is unscoped. Have you passed a valid token of VRE?", this.getClass(), helpURI);
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catch (IOException | JAXBException | SAXException e1) {
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logger.error("The body is not a valid DataMinerInvocation JSON request",e1);
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ExceptionManager.throwBadRequestException(req, "Bad 'dataminer-invocation' JSON request: \n"+e1.getCause().getMessage(), this.getClass(), helpURI);
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}
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String appToken = req.getServletContext().getInitParameter(TokenSetter.ROOT_APP_TOKEN);
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if(contextToken.compareTo(appToken)==0){
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logger.error("Token not passed, SecurityTokenProvider contains the root app token: "+appToken.substring(0,10)+"...");
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ExceptionManager.throwUnauthorizedException(req, "You are not authorized. You must pass a token of VRE", this.getClass(), helpURI);
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}
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//TOKEN AND SCOPE SHOULD BE VALID SETTINGS THEM
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SecurityTokenProvider.instance.set(contextToken);
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ScopeProvider.instance.set(scope);
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//END SIMULATING SMART GEAR BEHAVIOUR - VALIDATING TOKEN
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*/
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logger.debug("The body contains the request: "+jsonRequest.toString());
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String contextToken = SecurityTokenProvider.instance.get();
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String scope = ScopeProvider.instance.get();
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logger.info("SecurityTokenProvider contextToken: "+contextToken);
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logger.info("ScopeProvider scope: "+scope);
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// logger.info("SecurityTokenProvider contextToken: "+contextToken);
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logger.info("ScopeProvider has scope: "+scope);
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String appToken = req.getServletContext().getInitParameter(TokenSetter.ROOT_APP_TOKEN);
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@ -150,55 +107,53 @@ public class AnalyticsCreateResolver {
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if(scopeBean.is(Type.VRE)){
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String vreName = scopeBean.name();
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try {
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// try {
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String dataminerResolverURL = String.format("%s/%s", Util.getServerURL(req), "dataminer/get");
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String dataminerResolverURL = String.format("%s/%s", Util.getServerURL(req), "analytics/get");
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//Creating DM invocation file
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DataMinerInvocation dmInvocation = new DataMinerInvocation();
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dmInvocation.setOperatorId(operatorID);
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dmInvocation.setActionType(ActionType.RUN);
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if(jsonRequest.getActionType()==null)
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jsonRequest.setActionType(ActionType.RUN);
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DataMinerInputParams inputParams = new DataMinerInputParams();
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List<DataMinerParam> listParam = new ArrayList<DataMinerParam>();
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Map<String, String> parameters = jsonRequest.getParameters();
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for (String param : parameters.keySet()) {
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listParam.add(new DataMinerParam(param, parameters.get(param)));
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}
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inputParams.setListParam(listParam);
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dmInvocation.setParameters(new DataMinerParameters(inputParams, null));
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File tempInvocationFile = null;
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try {
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ByteArrayOutputStream xmlByteArray = DataMinerInvocationManager.marshaling(dmInvocation, org.gcube.data.analysis.dminvocation.MediaType.ApplicationXML);
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ByteArrayOutputStream xmlByteArray = DataMinerInvocationManager.getInstance().marshaling(jsonRequest, org.gcube.data.analysis.dminvocation.MediaType.ApplicationXML, true);
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String uniqueName = createDMInvocationFileName(jsonRequest.getOperatorId());
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tempInvocationFile = createTempFile(uniqueName, ".xml", xmlByteArray.toByteArray());
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//CREATE THE FILE ON STORAGE HUB
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StorageHubClient shc = new StorageHubClient();
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logger.info("Created StorageHubClient Instance, uploading file: "+tempInvocationFile.getName());
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FileContainer fileContainer = shc.getWSRoot().uploadFile(new FileInputStream(tempInvocationFile), tempInvocationFile.getName(), "DataMinerInvocation Request created by "+this.getClass().getSimpleName());
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logger.info("UPLOADED FILE at: "+fileContainer.getPublicLink());
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URL thePublicLink = fileContainer.getPublicLink();
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publicLinkToDMInvFile = thePublicLink!=null?thePublicLink.toString():null;
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}
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catch (IOException | JAXBException e) {
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logger.error("Error on creating you request with "+dmInvocation+"", e);
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ExceptionManager.throwBadRequestException(req, "Error on creating you request with "+dmInvocation, this.getClass(), helpURI);
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catch (Exception e) {
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logger.error("Error on creating 'dataminer-invocation:", e);
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ExceptionManager.throwBadRequestException(req, "Error on creating your 'dataminer-invocation' request with "+jsonRequest+". \nPlease contact the support", this.getClass(), helpURI);
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}finally{
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//DELETING THE TEMP FILE
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if(tempInvocationFile!=null && tempInvocationFile.exists())
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tempInvocationFile.delete();
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// if(tempInvocationFile!=null && tempInvocationFile.exists())
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// tempInvocationFile.delete();
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}
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if(publicLinkToDMInvFile==null){
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logger.error("Error on creating the public link to file");
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ExceptionManager.throwBadRequestException(req, "Error on getting link to your 'dataminer-invocation' request. Plese contact the support "+jsonRequest, this.getClass(), helpURI);
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}
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String dataMinerURL = String.format("%s/%s?%s=%s", dataminerResolverURL, vreName, DATAMINER_INVOCATION_MODEL, URLEncoder.encode(publicLinkToDMInvFile, UTF_8));
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String dataMinerURL = String.format("%s/%s?%s=%s", dataminerResolverURL, vreName, DATAMINER_INVOCATION_MODEL, publicLinkToDMInvFile);
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logger.info("Returning Analytics URL: "+dataMinerURL);
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return Response.ok(dataMinerURL).header("Location", dataMinerURL).build();
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}
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catch (UnsupportedEncodingException e) {
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logger.error("Encoding error for "+publicLinkToDMInvFile+"", e);
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ExceptionManager.throwBadRequestException(req, "Error on encoding the public link "+publicLinkToDMInvFile, this.getClass(), helpURI);
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}
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return null;
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// }
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// catch (UnsupportedEncodingException e) {
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// logger.error("Encoding error for "+publicLinkToDMInvFile+"", e);
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// ExceptionManager.throwBadRequestException(req, "Error on encoding the public link "+publicLinkToDMInvFile, this.getClass(), helpURI);
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// }
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// return null;
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}else{
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logger.error("The input scope "+scope+" is not a VRE");
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@ -225,7 +180,7 @@ public class AnalyticsCreateResolver {
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File file = path.toFile();
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// writing sample data
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Files.write(path, data);
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logger.info("Created the temfile: "+file.getAbsolutePath());
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logger.info("Created the Temp File: "+file.getAbsolutePath());
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return file;
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}
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@ -242,8 +197,8 @@ public class AnalyticsCreateResolver {
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if(index>0 && index<operatorId.length()){
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fileName+="-"+operatorId.substring(index+1,operatorId.length());
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}
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String currentTimestamp = dateFormat.format(new Date());
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fileName+="-"+currentTimestamp;
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//String currentTimestamp = dateFormat.format(new Date());
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fileName+="-"+System.currentTimeMillis();
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return fileName;
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}
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@ -13,6 +13,7 @@ import javax.ws.rs.PathParam;
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import javax.ws.rs.core.Context;
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import javax.ws.rs.core.Response;
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import org.gcube.datatransfer.resolver.applicationprofile.ApplicationProfileReader;
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import org.gcube.datatransfer.resolver.caches.LoadingVREsScopeCache;
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import org.gcube.datatransfer.resolver.services.error.ExceptionManager;
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import org.slf4j.Logger;
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@ -28,22 +29,23 @@ import org.slf4j.LoggerFactory;
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@Path("/analytics")
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public class AnalyticsGetResolver {
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/**
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*
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*/
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private static final String UTF_8 = "UTF-8";
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private static Logger logger = LoggerFactory.getLogger(AnalyticsGetResolver.class);
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private static String helpURI = "https://wiki.gcube-system.org/gcube/URI_Resolver";
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private static final String ORG_GCUBE_PORTLETS_USER_DATAMINERMANAGER_SERVER_DATA_MINER_MANAGER_SERVICE_IMPL =
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"org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl";
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private static final String APPLICATION_PROFILE = "ApplicationProfile";
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private static String helpURI = "https://wiki.gcube-system.org/gcube/URI_Resolver#Analitycs_Resolver";
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private static final String ANALYTICS_EXECUTOR_PORTLET_NAME = "Analytics Executor";
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/**
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* Gets the data miner.
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*
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* @param req the req
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* @param provider the provider
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* @param path the path
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* @param remainPath the remain path
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* @param vreName the vre name
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* @return the data miner
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*/
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@GET
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@ -59,13 +61,20 @@ public class AnalyticsGetResolver {
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try{
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String fullScope = LoadingVREsScopeCache.getCache().get(vreName);
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ApplicationProfileReader reader = null;
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try{
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reader = new ApplicationProfileReader(fullScope, APPLICATION_PROFILE, ORG_GCUBE_PORTLETS_USER_DATAMINERMANAGER_SERVER_DATA_MINER_MANAGER_SERVICE_IMPL, false);
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}catch(Exception e){
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logger.error("Error on reading the "+APPLICATION_PROFILE+" with APPID: "+ORG_GCUBE_PORTLETS_USER_DATAMINERMANAGER_SERVER_DATA_MINER_MANAGER_SERVICE_IMPL, e);
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ExceptionManager.throwInternalErrorException(req, "Error on reading the Application Profile for the "+ANALYTICS_EXECUTOR_PORTLET_NAME+". Please contact the support", this.getClass(), helpURI);
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}
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//READ THE DATAMINER URL PORTLET FROM APPLICATION PROFRILE IN THE SCOPE fullScope
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String dataminerEndPoint = "https://pre.d4science.org/group/prevre/dataminer-manager";
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String dataminerEndPoint = reader.getApplicationProfile().getUrl();
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String queryString = "";
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if(req.getQueryString()!=null && !req.getQueryString().isEmpty()){
|
||||
queryString+="&"+req.getQueryString();
|
||||
queryString+=req.getQueryString();
|
||||
}
|
||||
|
||||
String dataMinerResolveURL = String.format("%s?%s", dataminerEndPoint, queryString);
|
||||
|
|
|
|||
|
|
@ -78,7 +78,6 @@ public class StorageHubResolver {
|
|||
}
|
||||
try{
|
||||
|
||||
|
||||
StreamDescriptor descriptor = shc.open(id).asFile().downloadSpecificVersion(version);
|
||||
return Response
|
||||
.ok(descriptor.getStream())
|
||||
|
|
|
|||
|
|
@ -3,6 +3,6 @@
|
|||
<group>DataTransfer</group>
|
||||
<version>1.0.0-SNAPSHOT</version>
|
||||
<description>URIResolver RESTful</description>
|
||||
<include>/analytics/create*</include>
|
||||
<include>/knime/create*</include>
|
||||
<include>/analytics/create/*</include>
|
||||
<include>/knime/create/*</include>
|
||||
</application>
|
||||
|
|
@ -18,6 +18,7 @@ import java.util.Map;
|
|||
import org.apache.commons.io.FilenameUtils;
|
||||
import org.apache.commons.io.IOUtils;
|
||||
import org.apache.http.HttpStatus;
|
||||
import org.gcube.datatransfer.resolver.applicationprofile.ApplicationProfileReader;
|
||||
import org.gcube.datatransfer.resolver.util.HTTPCallsUtils;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
|
@ -409,4 +410,23 @@ public class TestResolvers {
|
|||
System.out.println("Filename is: "+fileName);
|
||||
return fileName;
|
||||
}
|
||||
|
||||
/**
|
||||
*
|
||||
*/
|
||||
private static final String ORG_GCUBE_PORTLETS_USER_DATAMINERMANAGER_SERVER_DATA_MINER_MANAGER_SERVICE_IMPL =
|
||||
"org.gcube.portlets.user.dataminermanager.server.DataMinerManagerServiceImpl";
|
||||
/**
|
||||
*
|
||||
*/
|
||||
private static final String APPLICATION_PROFILE = "ApplicationProfile";
|
||||
/**
|
||||
*
|
||||
* @param args
|
||||
*/
|
||||
public static void main(String[] args) {
|
||||
|
||||
ApplicationProfileReader reader = new ApplicationProfileReader("/gcube/preprod/preVRE", APPLICATION_PROFILE, ORG_GCUBE_PORTLETS_USER_DATAMINERMANAGER_SERVER_DATA_MINER_MANAGER_SERVICE_IMPL, false);
|
||||
System.out.println(reader);
|
||||
}
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue