Added exporter for BibLaTeX format
This commit is contained in:
parent
436c117b8b
commit
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@ -29,3 +29,5 @@ replay_pid*
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/.project
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/exported-gcat-deposit.json
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/exported-zenodo-deposit.json
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/gcat.bib
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/gcat.json
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@ -1,167 +0,0 @@
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{
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"name" : "gcat",
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"short_description" : "gCube Catalogue (gCat) Service allows any client to publish on the gCube Catalogue.",
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"publish" : "NONE",
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"export" : "ALL",
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"default_files" : [ {
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"url" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
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"desired_name" : "{{name}}-v{{version}}.zip"
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}, {
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"url" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
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"desired_name" : "{{name}}-v{{version}}.tar.gz"
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}, {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/{{name}}/{{version}}/{{name}}-{{version}}.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"default_code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/releases/tag/v{{version}}",
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"code_location_text" : "\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>",
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"versions" : [ {
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"version" : "1.0.0",
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"date" : "2019-01-10",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.0.0-SNAPSHOT/gcat-1.0.0-20190109.172827-2.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : null,
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"gcube_release_ticket" : null,
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1139446"
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}, {
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"version" : "1.1.0",
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"date" : "2019-02-26",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071-src.zip",
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"desired_name" : "{{name}}-v{{version}}.zip"
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}, {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : "4.13.1",
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"gcube_release_ticket" : "https://support.d4science.org/issues/12988",
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1140461"
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}, {
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"version" : "1.2.0",
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"date" : "2019-05-20",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.2.0-SNAPSHOT/gcat-1.2.0-20190520.132914-10.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : null,
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"gcube_release_ticket" : null,
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1140750"
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}, {
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"version" : "1.3.0",
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"date" : "2019-06-27",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505-src.zip",
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"desired_name" : "{{name}}-v{{version}}.zip"
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}, {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : "4.14.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/16743",
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143572"
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}, {
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"version" : "1.4.0",
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"date" : "2019-11-20",
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"gcube_release_version" : "4.15.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/17294",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143583"
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}, {
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"version" : "1.4.1",
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"date" : "2019-12-20",
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"gcube_release_version" : "4.18.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/18335",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143585"
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}, {
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"version" : "1.4.2",
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"date" : "2020-02-14",
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"gcube_release_version" : "4.20.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/18507",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143586"
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}, {
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"version" : "1.4.3",
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"date" : "2020-06-16",
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"gcube_release_version" : "4.23.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/19322",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143587"
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}, {
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"version" : "1.4.4",
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"date" : "2021-02-24",
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"gcube_release_version" : "5.0.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/20648",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143589"
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}, {
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"version" : "1.4.5",
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"date" : "2021-05-31",
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"gcube_release_version" : "5.1.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/20920",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143590"
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} ],
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"metadata" : {
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"access_right" : "open",
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"creators" : [ {
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"affiliation" : "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
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"name" : "Frosini, Luca",
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"orcid" : "0000-0003-3183-2291"
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} ],
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"description" : "<p><a href=\"https://www.gcube-system.org/\">gCube</a> Catalogue (gCat) Service allows any client to publish on the gCube Catalogue.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the <a href=\"https://www.d4science.org/\">D4Science Infrastructure</a>, by favouring the realisation of reuse-oriented policies.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data.</p>\n\n<p><a href=\"https://www.d4science.org/\">D4Science</a> is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube.</p>\n\n<p> </p>",
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"grants" : [ {
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"id" : "283644"
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}, {
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"id" : "283465"
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}, {
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"id" : "10.13039/501100000780::675680"
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}, {
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"id" : "10.13039/501100000780::818194"
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}, {
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"id" : "10.13039/501100000780::654142"
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}, {
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"id" : "10.13039/501100000780::871042"
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}, {
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"id" : "10.13039/501100000780::823914"
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}, {
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"id" : "239019"
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}, {
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"id" : "288754"
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}, {
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"id" : "10.13039/501100000780::654182"
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}, {
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"id" : "10.13039/501100000780::857650"
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}, {
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"id" : "10.13039/501100000780::862409"
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}, {
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"id" : "10.13039/501100000780::731001"
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}, {
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"id" : "10.13039/501100000780::654119"
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}, {
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"id" : "212488"
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}, {
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"id" : "10.13039/501100000780::824091"
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}, {
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"id" : "10.13039/501100000780::727610"
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}, {
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"id" : "10.13039/501100000780::654024"
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} ],
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"keywords" : [ "gCube", "Catalogue", "D4Science" ],
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"license" : "EUPL-1.1",
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"publication_date" : "{{date}}",
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"title" : "gCube Catalogue (gCat) Service {{version}}",
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"upload_type" : "software",
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"version" : "{{version}}"
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}
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}
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@ -19,8 +19,9 @@ public class SoftwareConceptAnalyser {
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private static final Logger logger = LoggerFactory.getLogger(SoftwareConceptAnalyser.class);
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public static final String CONCEPT_FILENAME_EXTENSION = ".json";
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protected ObjectMapper objectMapper;
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protected File jsonFile;
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public SoftwareConceptAnalyser() {
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this.objectMapper = new ObjectMapper();
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@ -30,7 +31,6 @@ public class SoftwareConceptAnalyser {
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}
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public void analyse(File jsonFile) throws Exception {
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this.jsonFile = jsonFile;
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SoftwareConcept deposition = objectMapper.readValue(jsonFile, SoftwareConcept.class);
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analyse(deposition);
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}
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@ -44,6 +44,7 @@ public class SoftwareConceptAnalyser {
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String name = softwareConcept.getName();
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SoftwareVersion previous = null;
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List<SoftwareVersion> depositionVersions = softwareConcept.getDepositionVersions();
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for(int i=0; i<depositionVersions.size(); i++) {
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@ -59,8 +60,9 @@ public class SoftwareConceptAnalyser {
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name, softwareVersion.getVersion(),
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softwareVersion.getPrevious()!=null ? softwareVersion.getPrevious().getVersion(): null);
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SoftwareVersionAnalyser elaborateDeposition = new SoftwareVersionAnalyser(objectMapper, softwareVersion);
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elaborateDeposition.analyse();
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SoftwareVersionAnalyser softwareVersionAnalyser = new SoftwareVersionAnalyser(objectMapper, softwareVersion);
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softwareVersionAnalyser.setFirst(i==0);
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softwareVersionAnalyser.analyse();
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previous = softwareVersion;
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@ -68,12 +70,8 @@ public class SoftwareConceptAnalyser {
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}
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logger.debug("{}", objectMapper.writeValueAsString(softwareConcept));
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if(jsonFile!=null) {
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// File directory = jsonFile.getParentFile();
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// File newJsonFile = new File(directory, "exported-"+jsonFile.getName());
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File newJsonFile = new File("exported-"+jsonFile.getName());
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objectMapper.writeValue(newJsonFile, softwareConcept);
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}
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File file = new File(name+CONCEPT_FILENAME_EXTENSION);
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objectMapper.writeValue(file, softwareConcept);
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}
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}
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@ -18,12 +18,21 @@ public class SoftwareVersionAnalyser {
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protected ObjectMapper objectMapper;
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protected SoftwareVersion softwareVersion;
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protected boolean first;
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public SoftwareVersionAnalyser(ObjectMapper objectMapper, SoftwareVersion softwareVersion) {
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this.objectMapper = objectMapper;
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this.softwareVersion = softwareVersion;
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}
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public boolean isFirst() {
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return first;
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}
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public void setFirst(boolean first) {
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this.first = first;
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}
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public void analyse() throws Exception {
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logger.debug("SoftwareVersion: {}", objectMapper.writeValueAsString(softwareVersion));
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@ -31,18 +40,18 @@ public class SoftwareVersionAnalyser {
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for(SoftwareVersionPublisher svp: svps) {
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svp.setSoftwareVersion(softwareVersion);
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svp.setObjectMapper(objectMapper);
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svp.setFirst(first);
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svp.publish();
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}
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List<SoftwareVersionExporter> sves = SoftwareVersionExporter.getExporters();
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for(SoftwareVersionExporter sve: sves) {
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sve.setSoftwareVersion(softwareVersion);
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sve.setObjectMapper(objectMapper);
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sve.setFirst(first);
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sve.export();
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}
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}
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}
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@ -20,6 +20,7 @@ import org.gcube.com.fasterxml.jackson.databind.JsonNode;
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import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
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import org.gcube.com.fasterxml.jackson.databind.node.ObjectNode;
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import org.gcube.com.fasterxml.jackson.databind.node.TextNode;
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import org.gcube.common.software.utils.Utils;
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/**
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* @author Luca Frosini (ISTI - CNR)
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@ -354,16 +355,11 @@ public class SoftwareVersion {
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}
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@JsonIgnore
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protected String replaceVariable(String variableName, String replace, String s) {
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return s.replaceAll("\\{\\{" + variableName + "\\}\\}", replace);
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}
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@JsonIgnore
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protected String replaceVariables(String stringToAnalise) {
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String s = replaceVariable("name", softwareConcept.getName(), stringToAnalise);
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s = replaceVariable("version", version, s);
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s = replaceVariable("date", SoftwareVersion.getDateAsString(date), s);
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String s = Utils.replaceVariable("name", softwareConcept.getName(), stringToAnalise);
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s = Utils.replaceVariable("version", version, s);
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s = Utils.replaceVariable("date", SoftwareVersion.getDateAsString(date), s);
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return s;
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}
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@ -385,7 +381,7 @@ public class SoftwareVersion {
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String codeLocationText = softwareConcept.getCodeLocationAdditionalDescription();
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codeLocationText = replaceVariables(codeLocationText);
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codeLocationText = replaceVariable("code_location", getCodeLocation().toString(), codeLocationText);
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codeLocationText = Utils.replaceVariable("code_location", getCodeLocation().toString(), codeLocationText);
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stringWriter.append(codeLocationText);
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@ -20,6 +20,7 @@ public abstract class SoftwareVersionExporter {
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protected SoftwareVersion softwareVersion;
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protected ObjectMapper objectMapper;
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protected boolean first;
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public SoftwareVersion getSoftwareVersion() {
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return softwareVersion;
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@ -37,6 +38,14 @@ public abstract class SoftwareVersionExporter {
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this.objectMapper = objectMapper;
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}
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public boolean isFirst() {
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return first;
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}
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public void setFirst(boolean first) {
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this.first = first;
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}
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public abstract void export() throws Exception;
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}
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@ -1,7 +1,18 @@
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package org.gcube.common.software.process.export.biblatex;
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import java.io.BufferedWriter;
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import java.io.File;
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import java.io.FileWriter;
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import java.nio.charset.StandardCharsets;
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import java.nio.file.Files;
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import org.gcube.com.fasterxml.jackson.databind.JsonNode;
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import org.gcube.com.fasterxml.jackson.databind.node.ArrayNode;
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import org.gcube.common.software.model.SoftwareConcept;
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import org.gcube.common.software.model.SoftwareVersion;
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import org.gcube.common.software.process.export.SoftwareVersionExporter;
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import org.gcube.common.software.utils.FileUtils;
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import org.gcube.common.software.utils.Utils;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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@ -9,52 +20,148 @@ import org.slf4j.LoggerFactory;
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* @author Luca Frosini (ISTI - CNR)
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*/
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public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
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private static final Logger logger = LoggerFactory.getLogger(BibLaTeXSoftwareVersionExporter.class);
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public static final String EXPORT_FILENAME_EXTENSION = ".bib";
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public static final String TEMPLATE_FILENAME = "biblatex.template";
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public void export() throws Exception {
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SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
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String name = softwareConcept.getName();
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switch (softwareConcept.getExport()) {
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case ALL:
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generate();
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break;
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case UPDATE_ONLY:
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if(softwareVersion.isNewDeposition()) {
|
||||
logger.info("Skipping export for {} {}.",
|
||||
name, softwareVersion.getVersion());
|
||||
return;
|
||||
}
|
||||
generate();
|
||||
break;
|
||||
|
||||
case NEW:
|
||||
if(!softwareVersion.isNewDeposition()) {
|
||||
logger.info("Skipping export for {} {}.",
|
||||
name, softwareVersion.getVersion());
|
||||
return;
|
||||
}
|
||||
generate();
|
||||
break;
|
||||
|
||||
case NONE:
|
||||
default:
|
||||
logger.info("Skipping export for {} {}.",
|
||||
name, softwareVersion.getVersion());
|
||||
switch (softwareConcept.getExport()) {
|
||||
case ALL:
|
||||
generate();
|
||||
break;
|
||||
|
||||
case UPDATE_ONLY:
|
||||
if (softwareVersion.isNewDeposition()) {
|
||||
logger.info("Skipping export for {} {}.", name, softwareVersion.getVersion());
|
||||
return;
|
||||
}
|
||||
generate();
|
||||
break;
|
||||
|
||||
case NEW:
|
||||
if (!softwareVersion.isNewDeposition()) {
|
||||
logger.info("Skipping export for {} {}.", name, softwareVersion.getVersion());
|
||||
return;
|
||||
}
|
||||
generate();
|
||||
break;
|
||||
|
||||
case NONE:
|
||||
default:
|
||||
logger.info("Skipping export for {} {}.", name, softwareVersion.getVersion());
|
||||
return;
|
||||
}
|
||||
|
||||
|
||||
}
|
||||
|
||||
private void generate() throws Exception {
|
||||
protected String getTemplate() throws Exception {
|
||||
File file = FileUtils.getFileFromFilename(TEMPLATE_FILENAME);
|
||||
byte[] bytes = Files.readAllBytes(file.toPath());
|
||||
String template = new String(bytes, StandardCharsets.UTF_8);
|
||||
return template;
|
||||
}
|
||||
|
||||
private String getCitationID() {
|
||||
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
|
||||
String name = softwareConcept.getName().toLowerCase();
|
||||
StringBuffer stringBuffer = new StringBuffer();
|
||||
stringBuffer.append(name);
|
||||
stringBuffer.append("_");
|
||||
stringBuffer.append(softwareVersion.getVersion());
|
||||
return stringBuffer.toString();
|
||||
}
|
||||
|
||||
private String getTitle(JsonNode metadata) {
|
||||
String title = metadata.get("title").asText();
|
||||
title = Utils.replaceVariable("version", softwareVersion.getVersion(), title);
|
||||
return title;
|
||||
}
|
||||
|
||||
private String getAuthors(JsonNode metadata) {
|
||||
ArrayNode arrayNode = (ArrayNode) metadata.get("creators");
|
||||
StringBuffer stringBuffer = new StringBuffer();
|
||||
int size = arrayNode.size();
|
||||
for (int i = 0; i < size; i++) {
|
||||
JsonNode jsonNode = arrayNode.get(i);
|
||||
stringBuffer.append("{");
|
||||
// Surname, Name
|
||||
String fullName = jsonNode.get("name").asText();
|
||||
|
||||
// Surname: nameParts[0]
|
||||
// Name: nameParts[1]
|
||||
String[] nameParts = fullName.split(",");
|
||||
stringBuffer.append(nameParts[1].trim());
|
||||
stringBuffer.append(" ");
|
||||
stringBuffer.append(nameParts[0].trim());
|
||||
|
||||
stringBuffer.append("}");
|
||||
if (i < (size - 1)) {
|
||||
stringBuffer.append(" and ");
|
||||
}
|
||||
}
|
||||
return stringBuffer.toString();
|
||||
}
|
||||
|
||||
private String getKeywords(JsonNode metadata) {
|
||||
ArrayNode arrayNode = (ArrayNode) metadata.get("keywords");
|
||||
StringBuffer stringBuffer = new StringBuffer();
|
||||
int size = arrayNode.size();
|
||||
for (int i = 0; i < size; i++) {
|
||||
stringBuffer.append(arrayNode.get(i).asText());
|
||||
if (i < (size - 1)) {
|
||||
stringBuffer.append(", ");
|
||||
}
|
||||
}
|
||||
return stringBuffer.toString();
|
||||
}
|
||||
|
||||
protected String parseTemplate(String template) {
|
||||
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
|
||||
JsonNode metadata = softwareConcept.getMetadata();
|
||||
String s = Utils.replaceVariable("citation_id", getCitationID(), template);
|
||||
s = Utils.replaceVariable("title", getTitle(metadata), s);
|
||||
s = Utils.replaceVariable("doi", softwareVersion.getDOIURL().toString(), s);
|
||||
s = Utils.replaceVariable("short_description", softwareConcept.getShortDescription(), s);
|
||||
s = Utils.replaceVariable("version", softwareVersion.getVersion(), s);
|
||||
s = Utils.replaceVariable("author", getAuthors(metadata), s);
|
||||
s = Utils.replaceVariable("date", SoftwareVersion.getDateAsString(softwareVersion.getDate()), s);
|
||||
s = Utils.replaceVariable("keywords", getKeywords(metadata), s);
|
||||
return s;
|
||||
}
|
||||
|
||||
protected void generate() throws Exception {
|
||||
SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
|
||||
String name = softwareConcept.getName();
|
||||
logger.info("Going to export in BibLaTex format {} {}.",
|
||||
name, softwareVersion.getVersion());
|
||||
logger.info("Going to export {} {} in BibLaTex format.", name, softwareVersion.getVersion());
|
||||
|
||||
String template = getTemplate();
|
||||
String toBeExported = parseTemplate(template);
|
||||
|
||||
File exportFile = getExportFile();
|
||||
if (first && exportFile.exists()) {
|
||||
exportFile.delete();
|
||||
}
|
||||
|
||||
// TODO
|
||||
if (!exportFile.exists()) {
|
||||
exportFile.createNewFile();
|
||||
}
|
||||
|
||||
FileWriter fileWritter = new FileWriter(exportFile, true);
|
||||
BufferedWriter bw = new BufferedWriter(fileWritter);
|
||||
bw.write(toBeExported);
|
||||
bw.write("\n\n");
|
||||
bw.close();
|
||||
}
|
||||
|
||||
|
||||
protected File getExportFile() {
|
||||
String name = softwareVersion.getSoftwareConcept().getName();
|
||||
File file = new File(name + EXPORT_FILENAME_EXTENSION);
|
||||
return file;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -20,6 +20,7 @@ public abstract class SoftwareVersionPublisher {
|
|||
|
||||
protected SoftwareVersion softwareVersion;
|
||||
protected ObjectMapper objectMapper;
|
||||
protected boolean first;
|
||||
|
||||
public SoftwareVersion getSoftwareVersion() {
|
||||
return softwareVersion;
|
||||
|
|
@ -37,6 +38,14 @@ public abstract class SoftwareVersionPublisher {
|
|||
this.objectMapper = objectMapper;
|
||||
}
|
||||
|
||||
public boolean isFirst() {
|
||||
return first;
|
||||
}
|
||||
|
||||
public void setFirst(boolean first) {
|
||||
this.first = first;
|
||||
}
|
||||
|
||||
public abstract void publish() throws Exception;
|
||||
|
||||
}
|
||||
|
|
|
|||
|
|
@ -0,0 +1,24 @@
|
|||
package org.gcube.common.software.utils;
|
||||
|
||||
import java.io.File;
|
||||
import java.net.URL;
|
||||
|
||||
import org.gcube.common.software.process.export.biblatex.BibLaTeXSoftwareVersionExporter;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
/**
|
||||
* @author Luca Frosini (ISTI - CNR)
|
||||
*/
|
||||
public class FileUtils {
|
||||
|
||||
private static final Logger logger = LoggerFactory.getLogger(FileUtils.class);
|
||||
|
||||
public static File getFileFromFilename(String fileName) throws Exception {
|
||||
URL jsonFileURL = BibLaTeXSoftwareVersionExporter.class.getClassLoader().getResource(fileName);
|
||||
File file = new File(jsonFileURL.toURI());
|
||||
logger.trace("File is {}", file.getAbsolutePath());
|
||||
return file;
|
||||
}
|
||||
|
||||
}
|
||||
|
|
@ -0,0 +1,11 @@
|
|||
package org.gcube.common.software.utils;
|
||||
|
||||
/**
|
||||
* @author Luca Frosini (ISTI - CNR)
|
||||
*/
|
||||
public class Utils {
|
||||
|
||||
public static String replaceVariable(String variableName, String replace, String s) {
|
||||
return s.replaceAll("\\{\\{" + variableName + "\\}\\}", replace);
|
||||
}
|
||||
}
|
||||
|
|
@ -1,10 +1,9 @@
|
|||
@software{{{citation_id}},
|
||||
title = {{title}},
|
||||
url = {{doi}},
|
||||
abstract = {{short_description}},
|
||||
version = {{version}},
|
||||
author = {{author}},
|
||||
date = {{date}},
|
||||
note = {{}},
|
||||
keywords = {{keywords}},
|
||||
title = {{{title}}},
|
||||
url = {{{doi}}},
|
||||
abstract = {{{short_description}}},
|
||||
version = {{{version}}},
|
||||
author = {{{author}}},
|
||||
date = {{{date}}},
|
||||
keywords = {{{keywords}}},
|
||||
}
|
||||
|
|
@ -1,32 +1,22 @@
|
|||
package org.gcube.common.software.analyser;
|
||||
|
||||
import java.io.File;
|
||||
import java.net.URL;
|
||||
|
||||
import org.gcube.common.software.utils.FileUtils;
|
||||
import org.junit.Test;
|
||||
import org.slf4j.Logger;
|
||||
import org.slf4j.LoggerFactory;
|
||||
|
||||
/**
|
||||
* @author Luca Frosini (ISTI - CNR)
|
||||
*/
|
||||
public class SoftwareConceptAnalyserTest {
|
||||
|
||||
private static final Logger logger = LoggerFactory.getLogger(SoftwareConceptAnalyserTest.class);
|
||||
|
||||
protected static final String CONCEPT_FILENAME = "gcat.json";
|
||||
|
||||
public File getConceptFile() throws Exception {
|
||||
URL jsonFileURL = SoftwareConceptAnalyserTest.class.getClassLoader().getResource(CONCEPT_FILENAME);
|
||||
File jsonFile = new File(jsonFileURL.toURI());
|
||||
logger.debug("JSON Concept File is {}", jsonFile.getAbsolutePath());
|
||||
return jsonFile;
|
||||
}
|
||||
public static final String CONCEPT_FILENAME = "gcat.json";
|
||||
|
||||
@Test
|
||||
public void testUsingTestFile() throws Exception {
|
||||
SoftwareConceptAnalyser zenodoDeposit = new SoftwareConceptAnalyser();
|
||||
zenodoDeposit.analyse(getConceptFile());
|
||||
File file = FileUtils.getFileFromFilename(CONCEPT_FILENAME);
|
||||
zenodoDeposit.analyse(file);
|
||||
}
|
||||
|
||||
}
|
||||
|
|
|
|||
Loading…
Reference in New Issue