Implementing exporter
This commit is contained in:
parent
209cbe84bd
commit
436c117b8b
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@ -0,0 +1,167 @@
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{
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"name" : "gcat",
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"short_description" : "gCube Catalogue (gCat) Service allows any client to publish on the gCube Catalogue.",
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"publish" : "NONE",
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"export" : "ALL",
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"default_files" : [ {
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"url" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.zip",
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"desired_name" : "{{name}}-v{{version}}.zip"
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}, {
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"url" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/archive/v{{version}}.tar.gz",
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"desired_name" : "{{name}}-v{{version}}.tar.gz"
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}, {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/{{name}}/{{version}}/{{name}}-{{version}}.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"default_code_location" : "https://code-repo.d4science.org/gCubeSystem/{{name}}/releases/tag/v{{version}}",
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"code_location_text" : "\n\n<p>The official source code location of this software version is available at:</p>\n\n<p><a href=\"{{code_location}}\">{{code_location}}</a></p>",
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"versions" : [ {
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"version" : "1.0.0",
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"date" : "2019-01-10",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.0.0-SNAPSHOT/gcat-1.0.0-20190109.172827-2.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : null,
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"gcube_release_ticket" : null,
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1139446"
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}, {
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"version" : "1.1.0",
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"date" : "2019-02-26",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071-src.zip",
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"desired_name" : "{{name}}-v{{version}}.zip"
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}, {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.1.0-4.13.1-177071/gcat-1.1.0-4.13.1-177071.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : "4.13.1",
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"gcube_release_ticket" : "https://support.d4science.org/issues/12988",
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1140461"
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}, {
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"version" : "1.2.0",
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"date" : "2019-05-20",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repositories/gcube-snapshots/content/org/gcube/data-publishing/gcat/1.2.0-SNAPSHOT/gcat-1.2.0-20190520.132914-10.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : null,
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"gcube_release_ticket" : null,
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1140750"
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}, {
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"version" : "1.3.0",
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"date" : "2019-06-27",
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"files" : [ {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505-src.zip",
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"desired_name" : "{{name}}-v{{version}}.zip"
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}, {
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"url" : "https://nexus.d4science.org/nexus/service/local/repo_groups/gcube-releases-all/content/org/gcube/data-publishing/gcat/1.3.0-4.14.0-179505/gcat-1.3.0-4.14.0-179505.war",
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"desired_name" : "{{name}}-v{{version}}.war"
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} ],
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"gcube_release_version" : "4.14.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/16743",
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"code_location" : false,
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143572"
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}, {
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"version" : "1.4.0",
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"date" : "2019-11-20",
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"gcube_release_version" : "4.15.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/17294",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143583"
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}, {
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"version" : "1.4.1",
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"date" : "2019-12-20",
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"gcube_release_version" : "4.18.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/18335",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143585"
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}, {
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"version" : "1.4.2",
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"date" : "2020-02-14",
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"gcube_release_version" : "4.20.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/18507",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143586"
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}, {
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"version" : "1.4.3",
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"date" : "2020-06-16",
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"gcube_release_version" : "4.23.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/19322",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143587"
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}, {
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"version" : "1.4.4",
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"date" : "2021-02-24",
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"gcube_release_version" : "5.0.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/20648",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143589"
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}, {
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"version" : "1.4.5",
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"date" : "2021-05-31",
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"gcube_release_version" : "5.1.0",
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"gcube_release_ticket" : "https://support.d4science.org/issues/20920",
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"concept_doi_url" : "https://doi.org/10.5072/zenodo.1139445",
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"doi_url" : "https://doi.org/10.5072/zenodo.1143590"
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} ],
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"metadata" : {
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"access_right" : "open",
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"creators" : [ {
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"affiliation" : "Istituto di Scienza e Tecnologie dell'Informazione \"A. Faedo\" - CNR, Italy",
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"name" : "Frosini, Luca",
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"orcid" : "0000-0003-3183-2291"
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} ],
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"description" : "<p><a href=\"https://www.gcube-system.org/\">gCube</a> Catalogue (gCat) Service allows any client to publish on the gCube Catalogue.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> is an open-source software toolkit used for building and operating Hybrid Data Infrastructures enabling the dynamic deployment of Virtual Research Environments, such as the <a href=\"https://www.d4science.org/\">D4Science Infrastructure</a>, by favouring the realisation of reuse-oriented policies.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> has been used to successfully build and operate infrastructures and virtual research environments for application domains ranging from biodiversity to environmental data management and cultural heritage.</p>\n\n<p><a href=\"https://www.gcube-system.org/\">gCube</a> offers components supporting typical data management workflows including data access, curation, processing, and visualisation on a large set of data typologies ranging from primary biodiversity data to geospatial and tabular data.</p>\n\n<p><a href=\"https://www.d4science.org/\">D4Science</a> is a Hybrid Data Infrastructure combining over 500 software components and integrating data from more than 50 different data providers into a coherent and managed system of hardware, software, and data resources. The D4Science infrastructure drastically reduces the cost of ownership, maintenance, and operation thanks to the exploitation of gCube.</p>\n\n<p> </p>",
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"grants" : [ {
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"id" : "283644"
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}, {
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"id" : "283465"
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}, {
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"id" : "10.13039/501100000780::675680"
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}, {
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"id" : "10.13039/501100000780::818194"
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}, {
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"id" : "10.13039/501100000780::654142"
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}, {
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"id" : "10.13039/501100000780::871042"
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}, {
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"id" : "10.13039/501100000780::823914"
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}, {
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"id" : "239019"
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}, {
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"id" : "288754"
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}, {
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"id" : "10.13039/501100000780::654182"
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}, {
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"id" : "10.13039/501100000780::857650"
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}, {
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"id" : "10.13039/501100000780::862409"
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}, {
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"id" : "10.13039/501100000780::731001"
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}, {
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"id" : "10.13039/501100000780::654119"
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}, {
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"id" : "212488"
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}, {
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"id" : "10.13039/501100000780::824091"
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}, {
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"id" : "10.13039/501100000780::727610"
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}, {
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"id" : "10.13039/501100000780::654024"
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} ],
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"keywords" : [ "gCube", "Catalogue", "D4Science" ],
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"license" : "EUPL-1.1",
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"publication_date" : "{{date}}",
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"title" : "gCube Catalogue (gCat) Service {{version}}",
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"upload_type" : "software",
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"version" : "{{version}}"
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}
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}
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@ -12,6 +12,7 @@ import org.gcube.com.fasterxml.jackson.databind.JsonNode;
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public class SoftwareConcept {
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public static final String NAME_PROPERTY_NAME = "name";
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public static final String SHORT_DESCRIPTION_PROPERTY_NAME = "short_description";
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public static final String PUBLISH_PROPERTY_NAME = "publish";
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public static final String EXPORT_PROPERTY_NAME = "export";
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public static final String DEFAULT_FILES_PROPERTY_NAME = "default_files";
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@ -23,6 +24,9 @@ public class SoftwareConcept {
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@JsonProperty(NAME_PROPERTY_NAME)
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protected String name;
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@JsonProperty(SHORT_DESCRIPTION_PROPERTY_NAME)
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protected String shortDescription;
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@JsonProperty(PUBLISH_PROPERTY_NAME)
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@JsonFormat(shape=JsonFormat.Shape.STRING)
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protected ElaborationType publish;
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@ -50,12 +54,16 @@ public class SoftwareConcept {
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return name;
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}
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public String getShortDescription() {
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return shortDescription;
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}
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public ElaborationType getPublish() {
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return publish;
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}
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public ElaborationType getExport() {
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return publish;
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return export;
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}
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public List<SoftwareVersionFile> getDefaultFiles() {
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@ -4,25 +4,20 @@ import java.util.ArrayList;
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import java.util.List;
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import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
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import org.gcube.common.software.model.ElaborationType;
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import org.gcube.common.software.model.SoftwareConcept;
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import org.gcube.common.software.model.SoftwareVersion;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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import org.gcube.common.software.process.export.biblatex.BibLaTeXSoftwareVersionExporter;
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/**
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* @author Luca Frosini (ISTI - CNR)
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*/
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public abstract class SoftwareVersionExporter {
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private static final Logger logger = LoggerFactory.getLogger(SoftwareVersionExporter.class);
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public static List<SoftwareVersionExporter> getExporters() {
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List<SoftwareVersionExporter> sves = new ArrayList<>();
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sves.add(new BibLaTeXSoftwareVersionExporter());
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return sves;
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}
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protected SoftwareVersion softwareVersion;
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protected ObjectMapper objectMapper;
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@ -42,36 +37,6 @@ public abstract class SoftwareVersionExporter {
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this.objectMapper = objectMapper;
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}
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public void export() throws Exception {
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SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
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String name = softwareConcept.getName();
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if(softwareConcept.getPublish()==ElaborationType.NONE) {
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logger.info("Export is disabled for {} {}.",
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SoftwareConcept.class.getSimpleName(), name);
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return;
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}
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if(softwareVersion.isNewDeposition()) {
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if(softwareConcept.getPublish()==ElaborationType.ALL ||
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softwareConcept.getPublish()==ElaborationType.NEW) {
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logger.info("Going to export {} {}.",
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SoftwareConcept.class.getSimpleName(),
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name, softwareVersion.getVersion());
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}
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}else {
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if(softwareConcept.getPublish()==ElaborationType.ALL ||
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softwareConcept.getPublish()==ElaborationType.UPDATE_ONLY) {
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logger.info("Going to export {} {}.",
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name, softwareVersion.getVersion());
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}else {
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return;
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}
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}
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}
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public abstract void export() throws Exception;
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}
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package org.gcube.common.software.process.export.biblatex;
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import org.gcube.common.software.model.SoftwareConcept;
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import org.gcube.common.software.process.export.SoftwareVersionExporter;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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/**
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* @author Luca Frosini (ISTI - CNR)
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*/
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public class BibLaTeXSoftwareVersionExporter extends SoftwareVersionExporter {
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private static final Logger logger = LoggerFactory.getLogger(BibLaTeXSoftwareVersionExporter.class);
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public void export() throws Exception {
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SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
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String name = softwareConcept.getName();
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switch (softwareConcept.getExport()) {
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case ALL:
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generate();
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break;
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case UPDATE_ONLY:
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if(softwareVersion.isNewDeposition()) {
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logger.info("Skipping export for {} {}.",
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name, softwareVersion.getVersion());
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return;
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}
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generate();
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break;
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case NEW:
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if(!softwareVersion.isNewDeposition()) {
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logger.info("Skipping export for {} {}.",
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name, softwareVersion.getVersion());
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return;
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}
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generate();
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break;
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case NONE:
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default:
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logger.info("Skipping export for {} {}.",
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name, softwareVersion.getVersion());
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return;
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}
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}
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private void generate() throws Exception {
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SoftwareConcept softwareConcept = softwareVersion.getSoftwareConcept();
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String name = softwareConcept.getName();
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logger.info("Going to export in BibLaTex format {} {}.",
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name, softwareVersion.getVersion());
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// TODO
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}
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}
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@ -6,16 +6,12 @@ import java.util.List;
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import org.gcube.com.fasterxml.jackson.databind.ObjectMapper;
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import org.gcube.common.software.model.SoftwareVersion;
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import org.gcube.common.software.process.publish.zenodo.ZenodoSoftwareVersionPublisher;
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import org.slf4j.Logger;
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import org.slf4j.LoggerFactory;
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/**
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* @author Luca Frosini (ISTI - CNR)
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*/
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public abstract class SoftwareVersionPublisher {
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private static final Logger logger = LoggerFactory.getLogger(SoftwareVersionPublisher.class);
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public static List<SoftwareVersionPublisher> getPublishers() {
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List<SoftwareVersionPublisher> svps = new ArrayList<>();
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svps.add(new ZenodoSoftwareVersionPublisher());
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@ -398,7 +398,7 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
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String name = softwareConcept.getName();
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if(softwareConcept.getPublish()==ElaborationType.NONE) {
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logger.info("Deposit is disabled for softwareConcept {} {}.",
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logger.info("Deposit is disabled for {} {}.",
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name , softwareVersion.getVersion());
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return;
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}
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@ -409,11 +409,11 @@ public class ZenodoSoftwareVersionPublisher extends SoftwareVersionPublisher {
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if(softwareConcept.getPublish()==ElaborationType.ALL ||
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softwareConcept.getPublish()==ElaborationType.UPDATE_ONLY) {
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logger.info("Going to update SoftwareConcept {} {}.",
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logger.info("Going to update {} {}.",
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name , softwareVersion.getVersion());
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update();
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}else {
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logger.info("SoftwareConcept {} {} has been already deposited.",
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logger.info("{} {} has been already deposited.",
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name , softwareVersion.getVersion());
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}
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@ -0,0 +1,10 @@
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@software{{{citation_id}},
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title = {{title}},
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url = {{doi}},
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abstract = {{short_description}},
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version = {{version}},
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author = {{author}},
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date = {{date}},
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note = {{}},
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keywords = {{keywords}},
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}
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@ -2,6 +2,7 @@
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"name": "gcat",
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"publish": "NONE",
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"export": "ALL",
|
||||
"short_description": "gCube Catalogue (gCat) Service allows any client to publish on the gCube Catalogue.",
|
||||
"default_files":
|
||||
[
|
||||
{
|
||||
|
|
|
|||
|
|
@ -10,7 +10,7 @@
|
|||
|
||||
|
||||
<logger name="org.gcube" level="ERROR" />
|
||||
<logger name="org.gcube.common.deposition" level="INFO" />
|
||||
<logger name="org.gcube.common.software" level="INFO" />
|
||||
|
||||
<root level="WARN">
|
||||
<appender-ref ref="STDOUT" />
|
||||
|
|
|
|||
Loading…
Reference in New Issue